PHIB-BLAST error with following error code

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Gobong Choi

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Jun 17, 2021, 1:08:06 AM6/17/21

to sequenceserver

NoMethodError - undefined method `exitstatus' for nil:NilClass: /var/lib/gems/1.9.1/gems/sequenceserver-1.0.5/lib/sequenceserver/blast.rb:70:in `run' /var/lib/gems/1.9.1/gems/sequenceserver-1.0.5/lib/sequenceserver/routes.rb:125:in `block in <class:Routes>' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1610:in `call' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1610:in `block in compile!' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:974:in `[]' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:974:in `block (3 levels) in route!' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:993:in `route_eval' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:974:in `block (2 levels) in route!' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1014:in `block in process_route' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1012:in `catch' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1012:in `process_route' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:972:in `block in route!' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:971:in `each' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:971:in `route!' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1084:in `block in dispatch!' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1066:in `block in invoke' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1066:in `catch' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1066:in `invoke' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1081:in `dispatch!' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:906:in `block in call!' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1066:in `block in invoke' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1066:in `catch' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1066:in `invoke' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:906:in `call!' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:894:in `call' /var/lib/gems/1.9.1/gems/rack-1.6.4/lib/rack/head.rb:13:in `call' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:181:in `call' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:2021:in `call' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1486:in `block in call' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1795:in `synchronize' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1486:in `call' /var/lib/gems/1.9.1/gems/sequenceserver-1.0.5/lib/sequenceserver.rb:90:in `call' /var/lib/gems/1.9.1/gems/rack-1.6.4/lib/rack/handler/webrick.rb:88:in `service' /usr/lib/ruby/1.9.1/webrick/httpserver.rb:138:in `service' /usr/lib/ruby/1.9.1/webrick/httpserver.rb:94:in `run' /usr/lib/ruby/1.9.1/webrick/server.rb:191:in `block in start_thread'

Yannick Wurm

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Jun 19, 2021, 7:06:29 AM6/19/21

to sequenceserver

Thanks - this looks like its specific to a particular SequenceSErver installation - something the server administrators need to resolve

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