Sequence Server 1.0.9 (FASTA error)

[Patrick Souza]

Hi everyone!

I had a problem to retrieve a FASTA of Nasonia genome. When I try to download a FASTA of specific sequence (see image), the server returns the following message:

----------

# ERROR: incorrect number of sequences found.

# You requested 1 sequence(s) with the following identifiers:

#   3

# from the following databases:

#   Nasonia_vitripennis_GCF_000002325.3_Nvit_2.1_genome.fa

# but we found 0 sequence(s).

# 

# This is likley due to a problem with how databases are formatted.

# Please share this text with the person managing this website (or

# https://groups.google.com/forum/?fromgroups#!forum/sequenceserver

# if you are the admin) so that the issue can be resolved.

# 

# If any sequences were retrieved, you can find them below

# (but some may be incorrect, so be careful!) 

----------  

Someone know what is this or how to fix it?

Thanks!!

[Anurag Priyam]

Hi Patrick,

Some sequence id patterns have been a bit problematic, but I believe we fixed most of them in version 2.0: https://groups.google.com/g/sequenceserver/c/c98ePBzcuVE/m/lN-S35jVHgAJ

Would you be able to give version 2.0 of sequenceserver a try and let us know if the problem persists? Would be easier for us to fix it there.

Priyam

<NVIT_FASTA.png>

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<NVIT_FASTA.png>

[Patrick Souza]

Hi Priyam!

Thanks very much for your message!

I will try to use this new version. But, this version (2.0) it's only to Ruby/Linux?

There is an online version like 1.0.9?

Thanks

To view this discussion on the web visit https://groups.google.com/d/msgid/sequenceserver/9BAD8D88-31BF-4104-9E46-467CD834DCA0%40gmail.com.

--

____________________________________

Patrick D. Souza-Santos

Biólogo                        | PUCRS

Mestre em Entomologia         | FFCLRP - USP

Doutorando em Entomologia | FFCLRP - USP

Departamento de Genética    | (16) 3602-3102

Lattes                        | http://lattes.cnpq.br/7340914079723712

ORCID                | https://orcid.org/0000-0002-2062-414X

[Anurag Priyam]

Hi Patrick,

I am not entirely sure what you mean. If the problem you mentioned wasn’t on your PC or a server that you manage, you will have to ask the person who manages that Nasonia server to update sequenceserver. Alternatively, you can download Nasonia genome from NCBI and use it with latest sequenceserver on your PC.

Priyam

To view this discussion on the web visit https://groups.google.com/d/msgid/sequenceserver/CAPDQGBMAoNTSaLWPDjhPTK%3DjrJkUe%2B5HTWhMh3OfH9_5pf4PbA%40mail.gmail.com.