Issues in SeqMule installation

[Danilo Tiziano]

Hi,

I am trying to install SeqMule in Ubuntu 14.04 environment. Unfortunately, I did not succeed because I could not install soapsnp and vt. In particular, soapsnp requires g++4.4 that is not available for the 14.04 version. Vt as well as some issues, namely during make, this error appears:

cc: fatal error: no input files

compilation terminated.

make: *** [.o] Errore 4

Could you please help me? Thank you very much in advance.

Best,

Danilo

[Yunfei Guo]

Hi Danilo,

Sorry for late reply. I was not able to find a Ubuntu 14.04 machine. I tried to install vt, and it was installed without a problem. Could you please try again, or check if vt download is complete? You can find its URL in misc/exe_locations file. For soapsnp, you don't have to install it if you don't plan to use it. If you do want to use it, gcc-4.4 is available. You can run the following commands to install gcc-4.4.

sudo apt-get install gcc-4.4 g++-4.4

sudo update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-4.4 20

sudo update-alternatives --install /usr/bin/g++ g++ /usr/bin/g++-4.4 20

sudo update-alternatives --install /usr/bin/cc cc /usr/bin/gcc 30

 sudo update-alternatives --set cc /usr/bin/gcc

sudo update-alternatives --install /usr/bin/c++ c++ /usr/bin/g++ 30

sudo update-alternatives --set c++ /usr/bin/g++

Thanks!

Best,

Yunfei

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