- I just recently installed Seqmule on Linux Mint Sonya according to the directions given:
wget www.openbioinformatics.org/seqmule/seqmule.latest.tar.gz
tar zxvf seqmule.latest.tar.gz
cd SeqMule-master
./Build freshinstall
- In my home directory I have the folder SeqMule-master
ghalib@ghalib-MacBookPro ~
$ ls
CV Pictures firefox
Desktop Public israp-v0.1
Documents SeqMule-master miniconda3
Downloads Templates reference
Miniconda3-latest-Linux-x86.sh Videos seqmule.latest.tar.gz
Music anaconda3 src
MutAid_v1.1 bin
- In my SeqMule-master folder I have the following:
ghalib@ghalib-MacBookPro ~/SeqMule-master
$ ls
Build LICENSE bin exe img lib mkdocs.yml
INSTALL README.md doc exe_locations inc misc version
-The problem I have is in Database preparation. according to the SeqMule installation guide:
"The following commands download default databases to seqmule directory for hg19(GRch37) and hg18(GRch36) genome build, respecitvely. The default location for storing databases is seqmule/database.
seqmule download -down hg19all
When I run this command I get the following error message:
ghalib@ghalib-MacBookPro ~/SeqMule-master
$ seqmule download -download hg19all
seqmule: command not found
Am I not executing this in the proper directory?
Any help would be much appreciated.
Ghalib