SeqMule New Install

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ghalib...@gmail.com

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Nov 20, 2017, 3:42:25 PM11/20/17
to SeqMule-dev
Hello.
I am very new to command line.

- I just recently installed Seqmule on Linux Mint Sonya according to the directions given:

wget www.openbioinformatics.org/seqmule/seqmule.latest.tar.gz
tar zxvf seqmule.latest.tar.gz
cd SeqMule-master
./Build freshinstall

- In my home directory I have the folder SeqMule-master

ghalib@ghalib-MacBookPro ~
$ ls
CV Pictures firefox
Desktop Public israp-v0.1
Documents SeqMule-master miniconda3
Downloads Templates reference
Miniconda3-latest-Linux-x86.sh Videos seqmule.latest.tar.gz
Music anaconda3 src
MutAid_v1.1 bin

- In my SeqMule-master folder I have the following:

ghalib@ghalib-MacBookPro ~/SeqMule-master
$ ls
Build LICENSE bin exe img lib mkdocs.yml
INSTALL README.md doc exe_locations inc misc version

-The problem I have is in Database preparation. according to the SeqMule installation guide:

"The following commands download default databases to seqmule directory for hg19(GRch37) and hg18(GRch36) genome build, respecitvely. The default location for storing databases is seqmule/database.

seqmule download -down hg19all

When I run this command I get the following error message:


ghalib@ghalib-MacBookPro ~/SeqMule-master
$ seqmule download -download hg19all
seqmule: command not found


Am I not executing this in the proper directory?
Any help would be much appreciated.

Ghalib

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