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SeqMule-dev

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1–16 of 16

Welcome to SeqMule development group! SeqMule is developed at Wang Lab of University of Southern California.

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Juan Manuel Luque Sánchez

6/5/21

Re: SeqMule for Analysis of Arabidopsis thaliana

Dear Yunfei, A long time since i wrote you the last time. I want tio ask you, please, why one year

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Re: SeqMule for Analysis of Arabidopsis thaliana

Dear Yunfei, A long time since i wrote you the last time. I want tio ask you, please, why one year

6/5/21

Matthias Begemann

1/24/19

Hi all, in future versions, will there be an option to have CNV calling for WES / WGS / Panels? This

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Hi all, in future versions, will there be an option to have CNV calling for WES / WGS / Panels? This

1/24/19

Matthias Begemann

1/24/19

Hi all, I experienced that in a few cases a clear pathonic variant was not listet in my final VCF. I

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Hi all, I experienced that in a few cases a clear pathonic variant was not listet in my final VCF. I

1/24/19

Matthias Begemann

1/24/19

Ports / Proxy Settings for SeqMule

Dear all, Has anyone experience with running SeqMule behind a proxy Server with authentifcation (

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Ports / Proxy Settings for SeqMule

Dear all, Has anyone experience with running SeqMule behind a proxy Server with authentifcation (

1/24/19

m.beg...@gmail.com

10/2/18

Including ChrM callls

Hi all, bevor I switched to SeqMule, I usually got calls for ChrM as as site effect too. I looked up

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Including ChrM callls

Hi all, bevor I switched to SeqMule, I usually got calls for ChrM as as site effect too. I looked up

10/2/18

pinnintil...@gmail.com

1/19/18

Hi I want to do exome dataset analysis to find variants. Is it possible to map with the hg38.fa (

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Hi I want to do exome dataset analysis to find variants. Is it possible to map with the hg38.fa (

1/19/18

ghalib...@gmail.com

11/20/17

SeqMule New Install

Hello. I am very new to command line. - I just recently installed Seqmule on Linux Mint Sonya

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SeqMule New Install

Hello. I am very new to command line. - I just recently installed Seqmule on Linux Mint Sonya

11/20/17

barraza....@gmail.com, Yunfei Guo18

12/5/16

Problem generating consensus calls

Ok, thank you so much, I´ll stay tuned. Regards. On Saturday, December 3, 2016 at 12:02:22 PM UTC-6,

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Problem generating consensus calls

Ok, thank you so much, I´ll stay tuned. Regards. On Saturday, December 3, 2016 at 12:02:22 PM UTC-6,

12/5/16

Serena Spartano, Yunfei Guo2

10/14/16

Exome- trio analysis

Hi Serena, '-t NUMBER_CPU' is required if you use quick mode (-q). Also, what you saw is the

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Exome- trio analysis

Hi Serena, '-t NUMBER_CPU' is required if you use quick mode (-q). Also, what you saw is the

10/14/16

Danilo Tiziano, Yunfei Guo2

9/18/16

Issues in SeqMule installation

Hi Danilo, Sorry for late reply. I was not able to find a Ubuntu 14.04 machine. I tried to install vt

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Issues in SeqMule installation

Hi Danilo, Sorry for late reply. I was not able to find a Ubuntu 14.04 machine. I tried to install vt

9/18/16

5/27/16

Problem with gatklite realn when I run seqmule using Iontorrent bam file.

Hi every one, Please could you help me or suggest me a solution for the WES Iontorrent bam files

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Problem with gatklite realn when I run seqmule using Iontorrent bam file.

Hi every one, Please could you help me or suggest me a solution for the WES Iontorrent bam files

5/27/16

Yunfei Guo, Wubin Qu5

4/3/16

v1.2.4 is available!

谢谢你的提问！我在FAQ里进行了回答：http://seqmule.openbioinformatics.org/en/stable/Miscellaneous/FAQ/#how-much-space-

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v1.2.4 is available!

谢谢你的提问！我在FAQ里进行了回答：http://seqmule.openbioinformatics.org/en/stable/Miscellaneous/FAQ/#how-much-space-

4/3/16

Loke Kok Keong, Yunfei Guo4

3/28/16

Support with Mutect

Hi KK, Yes as long as the output complies with VCF 4.1 format supported by VCFtools and GATKLite.

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Support with Mutect

Hi KK, Yes as long as the output complies with VCF 4.1 format supported by VCFtools and GATKLite.

3/28/16

10/30/13

new version available

Dear SeqMule users, New version of SeqMule is available now! major changes: 1. add parallel variant

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new version available

Dear SeqMule users, New version of SeqMule is available now! major changes: 1. add parallel variant

10/30/13

2/14/13

fix library path

Hi all, I just fixed a problem with library searching path in the main program. Please update your

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fix library path

Hi all, I just fixed a problem with library searching path in the main program. Please update your

2/14/13

2/11/13

Hello, everyone, I'm glad to announce that seqmule has been improved with some nice functions.

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Hello, everyone, I'm glad to announce that seqmule has been improved with some nice functions.

2/11/13

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