Command line usage/scripting

[psaf...@googlemail.com]

Hi there,

First of all, SeqMiner has made proved a revolution in analysing out
ChIP-seq data, so thank you very much for making this tool available.

We are currently doing all our analysis using the GUI. However, for
certain analysis types we end up doing the same thing several times
with different files or slightly different settings. We would like to
increase the level of automation. Is it possible to run analysis using
SeqMiner from the command line, specifying where to dump output files?
If not, is there a documented API we could code against?

Thanks,

Peter

[kanwar]

I am also intrested to know if command line option is available which may provide me better control over graphics.

Thanks

Kanwar