gives different output with the same file

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Petros Kolovos

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Apr 29, 2014, 7:44:24 AM4/29/14

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Dear Tao and Users

Good morning!

I am a user of your seqminer program and I have a small problem.

I am using H3K27Ac vs HG19 promoters. When I load the whole file (containing chr, start, end, TAG value, fdr value, p value etc...) I get a picture as expected (normal.file..png).

However, when I use only chr start end of my original input chip seq file, then the outcome looks totally different

FYI I use the same kmeans and clustering method

Any ideas why?

Is it something that I am missing? Isn't the case that the program needs only chr, start, end?

Thank you in advance

Best regards