Also see this:
https://code.google.com/p/chromium/issues/detail?id=327092 for the identical problem for Chrome DevTools.
I think I can get by with minimal/no changes to the Sourcemap spec. However, GWT has to be altered, and it is a whole new codebase for me...
On the other hand, if I go far enough, I may even implement something that would allow for on-the-fly compilation of Java expressions by the CodeServer, which would open the door for conditional breakpoints and the Display window in Eclipse...