Re: [Insight-users] [ANNOUNCE] ITK 4.4.0 has been released!

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Curtis Rueden

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Jun 3, 2013, 5:31:52 PM6/3/13
to Matt McCormick, SciJava, Farsight Developers, ImageJ Developers, Fiji Developers, ITK, Mark Hiner, Gaëtan Lehmann
Hi all,

> The InsightToolkit (ITK) 4.4.0 has been released!

Congratulations to the ITK team!

Of particular interest (to me ;-) is this:

> Another new ImageIO module that expands the reach of ITK is the SCIFIO
> module.  SCIFIO is a refactoring of the Bio-Formats library.  This
> module provides access to a wide range of file formats encountered in
> life sciences/microscopy environments.  This experimental feature is
> available a Remote module; to enable it, set the Fetch_SCIFIO CMake
> variable to ON.  Many improvements and fixes are ongoing for this
> module; Git master is recommended for those interested in this module.

This has been several years in the making; kudos to Matt McCormick, Mark Hiner, Gaetan Lehmann and the whole ITK team for making it happen! And thanks to FARSIGHT and Kitware for making development of this module possible!

Regards,
Curtis


On Mon, Jun 3, 2013 at 4:06 PM, Matt McCormick <matt.mc...@kitware.com> wrote:
The InsightToolkit (ITK) 4.4.0 has been released!

The 4.4 release is a major milestone that marks the hard work of many
outstanding community members.

Links to the Sourceforge.net tarballs can be found on the download page:

  http://www.itk.org/ITK/resources/software.html


We will discuss what is new in 4.4.0 on Tuesday, June 11 at 3PM
Eastern Time (GMT -5).  To take part, join the “ITK BarCamp”
GooglePlus Community, and join the “What’s New in Release 4.4.0”
Event.  A link to the YouTube live stream of the event will also be
posted at

  http://www.itk.org/ITK/resources/webinars.html


In summary:

We are excited to announce two new ImageIO modules available in the
main repository.  The MINC ImageIO module provides a bridge to the
MINC file format, a powerful medical imaging format used by the MINC
library, another open source library with many features similar to
ITK.  The new MINC module, which has Image IO and Transform IO
capabilities, is considered experimental and must be enabled by
turning Module_ITKIOMINC ON in CMake’s configuration.  This will
automatically build the MINC library, which is now available on Mac,
Linux, and Windows.  The HDF5-based MINC2 file format is supported,
but support for the NetCDF-based MINC1 file format is not supported
because NetCDF is not distributed with ITK.

Another new ImageIO module that expands the reach of ITK is the SCIFIO
module.  SCIFIO is a refactoring of the Bio-Formats library.  This
module provides access to a wide range of file formats encountered in
life sciences/microscopy environments.  This experimental feature is
available a Remote module; to enable it, set the Fetch_SCIFIO CMake
variable to ON.  Many improvements and fixes are ongoing for this
module; Git master is recommended for those interested in this module.

A number of improvements were also made to DCMTK ImageIO, but this
module remains experimental on disabled by default.  To try DCMTK
ImageIO support, turn the CMake option Module_ITKIODCMTK ON.  For Unix
platforms, the supporting DCMTK library will automatically be built as
a CMake ExternalProject.  On Windows, the DCMTK library must be built
independently of the ITK build system.  Then, specify the location to
the external build after setting the CMake option ITK_USE_SYSTEM_DCMTK
ON.

A number of performance improvements were made to QuadEdgeMesh
processing and memory copy functions.  A new ImageScanlineIterator is
available.  This iterator can be used in many of the cases where an
ImageRegionIterator is applied, but it has better performance.

The approach to split image regions for parallel processing is no
longer hard coded to make multiple options available.

An API design change was started to improve the implied functionality
of the GetObject methods.  The non-const “GetObjectMacro” has been
replaced with a “GetModifiableObjectMacro” that will result in a
GetModifiableXXX method instead of a GetXXX method.  This makes the
non-const nature of the method and the circumvention of pipeline
update semantics explicit for both the code author and those reading
the class API.  This was implemented in a backwards compatible way,
and it will only be enforced if ITK_FUTURE_LEGACY_REMOVE is defined.

Support for the Google Double Conversion library was added to improve
the reading and writing of double values as ASCII text with the
intention to improve the precision of the text transform file format’s
serialization.

It is now easier to identify filter inputs by both a string name or an
integer index.  The internal methods to store and retrieve inputs by
either string or index was correspondingly refactored, and performance
was also improved.

JPEG ImageIO now writes and reads image spacing in a manner similar to
the TIFF ImageIO.

An extensive amount of code cruft was removed and coding style was
made more consistent; ITK gets more stylish and classy with every
release!

The ExternalData method to store large testing data outside of the Git
repository is now in upstream CMake 2.8.11.  Our internal version has
been updated to the improved version in CMake.

The minimum CMake required version was bumped to 2.8.8 on Windows and
2.8.5 otherwise.  This may be increased even higher in the near future
to ensure all CMake features utilized operate correctly.

Known assertion failures occur when compiled under Visual Studio in
the Debug configuration.  This will be fixed in 4.4.1.  If this has a
significant negative impact on your work, please consider contributing
a Nightly dashboard build under this configuration.  As previously
scheduled, Visual Studio 2005 is no longer be supported.

Support for building against system third party libraries continues to
improve.  Further improvements are expected for version 4.5.

All tests are now passing again on the Nightly big-endian dashboard system.

InsightApplications (ITKApps) has seen fixes in the FLTK superbuild
and the TCL wrapped applications.



Changes in ITK from v4.3.0 to v4.4.0 from the Git log:

Ali Ghayoor (7):
        ENH: Get the internal transforms of SyN registration filter
        COMP: Fix all valid cppcheck warnings in "Module/Filtering" directory
        COMP: Fix all valid cppcheck warnings in "Module/Core" directory
        COMP: Fix all valid cppcheck warnings in "Module/Segmentation" directory
        COMP: Fix all valid cppcheck warnings in "Module/Registration" directory
        COMP: Fix all valid cppcheck warnings in ITK (last patch)
        COMP: Fix all valid cppcheck warnings in "ITK/Module" directory

Arnaud Gelas (4):
        PERF: improve performance of couple of methods of itk::QuadEdgeMesh
        PERF: couple of speed up improvements for QuadEdgeMesh processing
        PERF: avoid doing GetPoint and SetPoint for the same point
        ENH: Simplify template parameters in itk::PointsLocator

Bill Lorensen (20):
        ENH: Prevent duplicate loading of dynamic libraries
        COMP: Fix compile error in PhilipsRECImageIO
        COMP: Fix compile error in PhilipsRECImageIO
        BUG: Memory leak after failed RegisterFactory
        BUG: Warn on directories
        ENH: Refactor DoubleToString into NumberToString
        DOC: Escape hash in comment
        STYLE: Apply kwstyle to Modules/Core tests
        STYLE: Apply kwstyle to Modules/Filtering tests
        STYLE: Apply kwstyle to Modules/Segmentation tests
        STYLE: Apply kwstyle to Modules/IO tests
        STYLE: Apply kwstyle to Modules/Numerics tests
        STYLE: Apply kwstyle to Modules/Registration tests
        STYLE: Apply kwstyle to some tests
        BUG: Memory leak after failed RegisterFactory
        COMP: Remove copy_n wrapper for standard std::copy
        COMP: Make the test stable by removing random source
        COMP: More baselines
        COMP: Another baseline
        COMP: Missing return error after exception

Brad King (14):
        BUG: ExternalData: Do not match directory names when resolving DATA{}
        STYLE: ExternalData: Cleanup stray TODO and typo in comments
        STYLE: ExternalData: Remove unused private interface
        ENH: ExternalData: Improve series matching using an explicit syntax
        ENH: ExternalData: Allow ()-groups in series match regex
        ENH: ExternalData: Allow DATA{} syntax to reference directories
        ENH: Configure new ExternalData series parsing for ITK baselines
        BUG: ExternalData: Collapse ../ components in DATA{} paths
        BUG: Fix "git gerrit-push" for content links with spaces
        STYLE: Add detail to the vxl update instructions
        STYLE: Add more detail to the vxl update instructions
        ENH: ExternalData: Partly generalize hash algo/ext handling
        ENH: ExternalData: Attach download rules to content links in IDEs
        ENH: ExternalData: Preserve escaped semicolons during argument expansion

Bradley Lowekamp (78):
        STYLE: Use ITK_ prefix for FFTW cmake variables and defines
        BUG: Change default boundary condition to ZeroFlux
        ENH: wrapping itkImageSeriesWriter
        BUG: incorrect CMake variable for system jpeg include
        DOC: Correct description of Bitwise binary filters
        BUG: incorrect CMake variable for system jpeg include
        COMP: GetTimeVaryingVelocityField methods did not compile
        ENH: Creating templateless region splitter classes
        ENH: Adding image region splitter for separable filtering
        PERF: Do not spawn threads that will not be used.
        ENH: ImageIO's now use ImageRegionSplitter base
        COMP: Specify export for Specialized Array output operators
        ENH: making old ImageRegionSplitter compatible with new splitter
        BUG: initials Direction IVAR
        STYLE: never a space before;
        COMP: Address unused parameter warning in GPU code
        BUG: Do not create static initialized ITK objects
        ENH: Converted Multidimensional splitter to new base class
        ENH: moving old ImageRegionSplitter to Deprecated Module
        BUG: Only thread 0 should report progress.
        PERF: Use std::fill for image filling
        BUG: Only thread 0 should report progress in LabelMapFilters
        COMP: Adding missing header
        BUG: Using CMake variable in external builds with autoconf environment
        BUG: initialize InverseCovariance size with degenerate matrix
        ENH: Adding numeric_traits specializations for "long long"
        ENH: instantiate vnl types with "long long" on all platforms
        Revert "ENH: Use named inputs in BinaryReconstruction filters."
        BUG: initialize InverseCovariance size with degenerate matrix
        BUG: Using CMake variable in external builds with autoconf environment
        COMP: Address unused parameter warning in GPU code
        BUG: Only thread 0 should report progress in LabelMapFilters
        BUG: Only thread 0 should report progress.
        COMP: Adding missing header
        ENH: Adding support for instantiating long long pixel types
        BUG: VerifyPreconditions checks required named inputs
        PERF: Adding performance oriented ScanlineIterator
        COMP: Remove copy_n wrapper for standard std::copy
        COMP: Missing ProgressReporter header
        COMP: Suppress linker warning from fftw external project
        COMP: Add missing ImageRegionIterator header in test
        BUG: Don't allocate empty names in Get I/O Names methods
        COMP: Make GPUFunctorBase destructor virtual
        PERF: Changing filters to use ImageScanlineInterator
        COMP: GCC_XML external project does not use BUILD_EXAMPLES
        BUG: Scanline iterator in STAPLE filter not advanced to next line
        PERF: Use ImageScanlineIterator in ImageAlgorithm::Copy
        PERF: Use iterators into name map for index inputs
        ENH: index can be associated with required input
        PERF: Add global variable of index names in ProcessObject
        COMP: fix unused result warning in ProcessObject
        ENH: Remove names inputs specialized comparison
        DOC: Updated input methods doxygen
        PERF: Use ImageAlgorithm::Copy in JoinSeries filter
        PERF: Change default index i/o prefix to just "_"
        PERF: Use ImageAlgorithm::Copy in CastImageFilter
        COMP: Fix failing implicit conversion from NULL
        BUG: restore gnu aligned attribute
        PERF: ImageAlgorithm::copy to use std::copy for conversion
        PERF: Store indexed outputs in array for constant time access
        COMP: GCC_XML compilation error with type_traits
        BUG: Add unsigned int concept check to LabelVoting filter
        COMP: Disable conversion warning for std::copy in ImageAlgorithm
        BUG: Use correct types for TIFF Tags and buff math
        BUG: Use local var for TIFF va_list parameter
        BUG: Use correct bytes for BigEndian magic number
        COMP: Fix int to char narrowing error and warning
        COMP: Fix int to char narrowing error and warning
        COMP: Fix scanf conversion specification to %u
        COMP: Fix scanf conversion specification for id types
        BUG: Remove extraneous print statement in tiffio
        BUG: Incorrect va_arg type used in TIFF and LSM
        BUG: JPEG2000 bool type in C is now unsigned char
        BUG: add a test to demonstrate ThreadedIteratorPartitioner bug
        BUG: Fix written other magic number in FreeSurferBinaryMeshIO
        COMP: Fix assert in LSM, = in err of ==
        BUG: IteratorPartitioner extra thread don't advance
        BUG: C++ bool is 4 bytes on osx ppc

Brian Helba (11):
        STYLE: Ensure documentation \author tags are parsed
        STYLE: Remove unnecessary overloads in favor of implicit conversion
        PERF: Replace deep copy with const const signature
        ENH: Re-enable LoadPrivateTags option in GDCMImageIO
        STYLE: Slightly refactor ImageFileWriter::Write to simplify logic
        ENH: Always enable Get*FromTag methods in GDCMImageIO
        DOC: Fix misspelling in MorphologyImageFilter
        DOC: Fix misspelling in ObjectMorphologyImageFilter
        STYLE: Remove unnecessary function call in GDCMImageIO
        STYLE: Remove calls to deprecated functionality from DICOM Examples / Tests
        ENH: Allow Get*FromTag to accept uppercase hex

Cory Quammen (1):
        COMP: Bumped up minimum required CMake version

Cyrille Faucheux (2):
        ENH: allow the ClampImageFilter to use user-defined bounds (#3016).
        ENH: Move the ClampImageFilter to the ImageIntensity module (#3016).

David Cole (4):
        BUG: Avoid using def file when BUILD_SHARED_LIBS is off
        BUG: Do not undefine _WIN32_WINNT
        BUG: Avoid using def file when BUILD_SHARED_LIBS is off
        BUG: Do not undefine _WIN32_WINNT

David Fuentes (2):
        ENH: Allow block matching on diff size images
        ENH: wrapping itkMaskFeaturePointSelectionFilter itkBlockMatchingImageFilter

Dirk Padfield (6):
        BUG: CSVFileReader was reading all values as NaN
        DOC: Made AnisotropicDiffusion documentation consistent with code
        ENH: Enable MetaIO to read filenames with spaces using regex
        BUG: CSVFileReader was reading all values as NaN
        ENH: Added m_RequiredFractionOfOverlappingPixels to MaskedFFTNCC
        BUG: SignedMaurerDistanceMap in 4D

Google double-conversion Maintainers (1):
        Google double-conversion (reduced)

Hans Johnson (21):
        COMP: Remove unnecessary BORLAND code
        COMP: Make type conversions explicit/consistent
        PERF: Optimize loop index computations
        COMP: Remove unnecessary BORLAND code
        COMP: Incomplete variable name change.
        COMP: Incorrect warning presented for cppcheck
        STYLE: The FFTW libs should be co-located with ITK
        COMP: Fix robustness of DCMTK internal builds
        ENH: Get function accessible from const objects
        COMP: Missing patch for ITK_FUTURE_LEGACY_REMOVE
        STYLE: Reduce redundant code identified by cpd
        BUG: Return a modifiable object or provide const
        STYLE: Improve SoftwareGuide documentation
        COMP: Type mis-match for comparison operator
        STYLE: Enforce using ITK macros when available
        COMP: Type mis-match for comparison operator
        BUG: ITK_FUTURE_LEGACY_REMOVE must cmake configured
        BUG: Expose BSplineInterpolateImageFunction test
        COMP: Linkage ITK_ABI_EXPORT to ITKCommon_EXPORT
        BUG: itk_tiff.h should not be in itkTIFFImageIO.h
        DOC: Fix line length issues for the SoftwareGuide

Ho Cheung (7):
        BUG: GradientVectorFlow should calculate timestep based on image dimension
        STYLE: GradientVectorFlow - Add const correctness
        STYLE: GradientVectorFlow
        PERF: GradientVectorFlow - Remove redundant initializations
        BUG: itkPolyLineParametricPath infinite loop for degenerate paths
        BUG: Fix ITK Path test failures
        BUG: ITK unable to detect number of threads under Unix in recent glibc.

ITK Migration V4 (4):
        DOC: Modify ContourMeanDistanceImageFilter comments.
        DOC: Modify MattesMutualInformationImageToImageMetric comments.
        DOC: Modify MaskImageFilter comments.
        DOC: Modify BSplineTransformInitializer comments.

Jan Margeta (1):
        COMP: Added missing header <functional> in itkAnchorCloseImageFilter.h

Julien Finet (2):
        ENH: Add unit test to itkThresholdImageFilterTest
        ENH: Add MaskingValue to MaskImageFilter

Julien Malik (2):
        BUG: Remove itkLoad definition in JPEG2000ImageIOFactory
        ENH: Add missing NumericTraits for complex

Julien Michel (2):
        BUG: Fix InverseDisplacementFieldImageFilter bug
        BUG: Fix InverseDisplacementFieldImageFilter bug

Kent Williams (21):
        COMP: Turn on -fpic in options for DCMTK External Project
        BUG: using InputPixelType to hold label count can overflow.
        COMP: Update DCMTK version to incorporate new fixes.
        COMP: Use portable method to find source dir & find DCMTK headers
        COMP: Start using ITKConsortium github to retrieve DCMTK.
        BUG: Regressions with respect to building DCMTK
        COMP: Added patch from Dirk Padfield
        ENH: use find_package(DCMTK NO_MODULE)
        ENH: Add double-conversion library for precise Float output
        COMP: replace in-line access methods with itk Macros
        COMP: The install path for DoubleConversion lib was wrong.
        COMP: removed warnings on Windows due to generic vs excp obj throw.
        COMP: check for this == &rhs as much as possible.
        COMP: Replace memcpy with std::copy in ImportImageContainer.
        COMP: Replace memcpy calls with std::copy
        COMP: Further changes to the use of std::copy_n
        COMP: Add preprocessor symbols to double-conversion for OS X PPC
        COMP: Add DoubleConversion merge from upstream documentation
        BUG: Return of NaN by DiffusionTensor3D::GetFractionalAnisotropy
        BUG: Dicom method for Dir Cosines made non-orthogonal directions
        COMP: Install openjpgDllConfig.h

Kris Zygmunt (1):
        PERF: Provide better default config for patch-based denoiser

Luis Ibanez (1):
        ENH: Maurer for Danielsson in Surface Distance.

Manuel Grizonnet (4):
        BUG: Inconsistency detected by ld.so due to static const string
        BUG: Inconsistency detected by ld.so due to static const string
        BUG: Inconsistency detected by ld.so due to static const string
        BUG: Inconsistency detected by ld.so due to static const string

Marco Feuerstein (1):
        ENH: JPEG IO now writes and reads spacing, similar to the TIFF IO (ITK-3023)

Marius Staring (3):
        ENH: expose parameter in Bilateral filter
        PERF: Replace fill and copy with std alternatives
        BUG: B-spline interpolator should use direction

Mark Hiner (1):
        ENH: Add SCIFIOImageIO.

Matthew McCormick (47):
        COMP: Fix wrapping configuration warnings about itkMeshBase, etc.
        COMP: Fix HDF5 unused function for long long on Unix.
        ENH: Bump CMake version numbers to 4.4.0.
        BUG: Remove unused metric test content link.
        COMP: Add DLL to PATH for Python tests on Visual Studio.
        BUG: Do not nullify the DCMTK ExternalProject UPDATE_COMMAND.
        BUG: Fix DCMTK lib_prefix identification.
        COMP: Fix HDF5 unused function for long long on Unix.
        BUG: Remove unused metric test content link.
        COMP: Add DLL to PATH for Python tests on Visual Studio.
        ENH: Bump CMakeLists.txt ITK version to 4.3.1.
        STYLE: Fix errors detected by KWStyleCodeTest.
        COMP: VectorIndexSelectionCastImageFilter extra itk namespace.
        STYLE: Fix alignment in itkMask{Image,Negated}ImageFilter.h
        ENH: Doxygen configuration update to 1.8.3.1.
        BUG: Fix FFTW install paths in ITKConfig.cmake (ITK-2995).
        DOC: Doxygen detection of DirectionTolerance as private.
        ENH: Get Direction and CoordinateTolerance are const methods.
        BUG: Add missing header to the third party TIFF install.
        COMP: More fixes to mesh wrapping warnings.
        BUG: Temporarily disable Python utility tests.
        COMP: Avoid explicit instantiation and specialization for Array.
        ENH: Add utility script to create JRE tarballs.
        ENH: Use named inputs in BinaryReconstruction filters.
        STYLE: Remove redundant itk namespace.
        DOC: CreateTestDriver srcs should have the .cxx extension.
        COMP: Must reinterpret the pointers to match
        COMP: Fix project linking against ITK that does not use VtkGlue.
        COMP: Fix project linking against ITK that does not use VtkGlue.
        BUG: Fix FFTW install paths in ITKConfig.cmake (ITK-2995).
        ENH: Bump version in CMakeLists.txt to 4.3.2.
        DOC: Doxygen expansion of itkGetModifiableObjectMacro.
        ENH: Remove unused wrapping code. ITK-3032.
        ENH: Use named inputs in BinaryReconstruction filters.
        COMP: Distance maps filters cannot wrap 1D.
        DOC: Remove reference to MeanDistanceImageFilter.
        STYLE: Fix KWStyle errors.
        STYLE: Remove entries from the old MINC2ImageIO.
        BUG: Remove MINCIO from the default registered modules.
        BUG: Add EXCLUDE_FROM_ALL to ThirdParty/MINC.
        BUG: Include SCIFIO in the auto-registered factories if the module
is enabled.
        BUG: Visual Studio itkClampImageFilterTest failures.
        STYLE: itkClampImageFilter.hxx in the wrong module.
        COMP: Add _CRT_NO_SECURE_WARNINGS when building GCCXML.
        COMP: Prevent ITK_USE_64BITS_IDS with Wrapping on Windows.
        STYLE: Too many blank lines in itkCastImageFilterTest.cxx.
        COMP: Bump MINC third party to fix warnings.

Nick Tustison (4):
        ENH:  Adding masking capabilities with confidence mask option.
        BUG:  Masks need to be warped.
        ENH:  Permitting access to shrinking per dimension.
        BUG: Valgrind error.

Nicolas Rey (1):
        STYLE: Minor style fixes

Paul Novotny (3):
        COMP: Fix TIFF on big endian systems
        COMP: Build fails with ITK_USE_SYSTEM_TIFF
        COMP: Fix TIFF on big endian systems

Prathamesh Kulkarni (1):
        COMP: QuickViewTest new baseline.

Sean McBride (4):
        STYLE: fixed minor spelling: XCode -> Xcode
        COMP: fixed clang warning about NULL to bool conversion
        BUG: Handle missing Analyze 7.5 flipped directions
        COMP: Handle missing Analyze 7.5 flipped directions

Tim Allman (3):
        DOC: Modify BSplineTransform comments.
        DOC: Modify JointHistogramMutualInformationImageToImageMetricv4 comments.
        DOC: Modify JointHistogramMutualInformationImageToImageMetricv4 comments.

Tom Vercauteren (2):
        COMP: GPUPDEDeformableRegistrationFilter.cl fails to "compile".
        COMP: GPUPDEDeformableRegistrationFilter.cl fails to "compile".

Vladimir S. FONOV (2):
        ENH: Adding libminc and updating MINC IO support.
        BUG: Making 2D Minc IO work properly

Xiaoxiao Liu (2):
        ENH: Sync python scripts with python3.
        ENH: Sync python scripts with python3.

Yan Xu (1):
        COMP: static cast unsigned int to int




Changes in ITKapps from v4.3.0-apps to v4.4.0-apps:

Bill Lorensen (3):
        COMP: VTK6 API change
        ENH: Add TCL Wrapped examples
        BUG: Missing includes for ITK4.4

Hans Johnson (1):
        COMP: Mac 10.8 fixes were incorporated in FLTK

Jamie Snape (1):
        BUG: Propagate build, linker, and OSX settings to external projects

Matt McCormick (6):
        COMP: Re-add the FLTK patch for some Macs.
        BUG: ITK External build only depends on VTK if being built.
        COMP: Update FLTK SVN configuration.
        ENH: Bump VTK ExternalProject to 5.10.1.
        COMP: Use FLTK zip file stored on Midas3.
        ENH: Bump ITK superbuild version to 4.4.0.

Roland Kwitt (1):
        COMP: Shadowing warning in GLSliceView.h

Stephen R. Aylward (1):
        COMP: Fix FLTK build error on Mac/Clang.

Xiaoxiao Liu (1):
        ENH: Print out accurate image IO error message.



Changes from v4.3.0 to v4.4.0 from the Jira Issue tracker:

[ITK-3002] - Make itkGetObjectMacro issue compile time warnings
[ITK-3003] - Add itkGetObjectMacro to the ITK_LEGACY_REMOVE option
[ITK-3085] - itkBSplineExponentialImageRegistrationTest Timeout on
RogueResearch11
[ITK-3086] - QuickViewTest test failure on farsight-mint
[ITK-3087] - itkLargeMetaImageWriteReadTest4 test failure on
dash5win7x64.kitware
[ITK-3088] - itkClampImageFilterTest test failure on lhcp-win7vm2.nlm
Win32-VS9-Release-Shared VS10-Release-Shared
[ITK-3089] - itkLSMImageIOTest on eldorado.kitware Ubuntu-g++-4.6.2-Debug
[ITK-3090] - itkTimeVaryingVelocityFieldImageRegistrationTest test
failure on eldorado.kitware Ubuntu-g++-4.6.2-Debug
[ITK-3091] - itkLSMImageIOTest test failure on RogueResearch9,
Mac10.6-gcc-rel-x86_64-static
[ITK-3093] - itkTIFFImageIOSpacing test failure on mini0.nlm,
MacOSX-cross-rosetta
[ITK-3094] - itkMeshFileReadWriteTest04 test failure on mini0.nlm,
MacOSX-cross-rosetta
[ITK-3095] - itkMeshFileReadWriteTest02 test failure on mini0.nlm,
MacOSX-cross-rosetta
[ITK-3096] - itkDiscreteGaussianImageFilterTest2 test failure on
mini0.nlm, MacOSX-cross-rosetta

Bug
[ITK-2889] - Bug in BSplineInterpolateImageFunction ?
[ITK-2919] - Build with JOM fails to properly generate ITKTargets.cmake
[ITK-2943] - Add migration guide related to "itkTestMain.h"
[ITK-2975] - itk::CastImageFilter creates bad output
[ITK-2978] - ImageSeriesFileReader MetaDataDictionary Array
Incorrectly Handles Missing Fields
[ITK-2983] - ITKVtkGlue not adding VTK_LIBRARIES
[ITK-2988] - tiff name pollution
[ITK-2989] - A factor of 1/standard_deviation is missing from the
kernel pdf estimator in MutualInformationImageToImageMetric
[ITK-2992] - tif_config.h is not install
[ITK-2995] - Install tree ITKConfig.cmake is wrong for FFTW
[ITK-3004] - Direction cosine matrix generated using the images DICOM
tag "image orientation (patient)" or (0020,0037) is not necessarilly
orthogonal
[ITK-3009] - itk::InverseDisplacementFieldImageFilter does not work properly
[ITK-3011] - Maurer for Danielsson in Surface Distance
[ITK-3012] - ld error on exit when using itkBinaryErodeImageFilter and
itkBinaryDilateImageFilter
[ITK-3015] - Modules/IO/PhillipsREC/src/itkPhilipsPar.cxx contains nonsense code
[ITK-3017] - ITK_ABI_EXPORT is used directly when ITKCommon_EXPORT
should be used
[ITK-3020] - ImageRegistration2D bug
[ITK-3021] - itk::ImportImageContainer use of memcpy seen as harmful
[ITK-3028] - BUG: B-spline interpolator should use direction
[ITK-3064] - BSplineDeformableTransform writes out a warning every
time a point in an image is transformed, causes memory allocation
errors
[ITK-3065] - TestImportImageContainer cannot handle memory reallocation
[ITK-3066] - BSplineDeformableTransform::InsideValidRegion icm with
even spline orders and ITK_USE_CENTERED_PIXEL_COORDINATES_CONSISTENTLY
[ITK-3068] - Cannot resample a VectorImage
[ITK-3069] - itkMersenneTwisterRandomVariateGenerator is not thread safe
[ITK-3070] - IPLCommonImageIO fails to read GE Signa CT file series.
[ITK-3071] - PolyLineParametricPath converges too slow
[ITK-3072] - itkTransforms could supply a spatial Jacobian.
[ITK-3083] - Clean Dashboard for 4.4 release
[ITK-3118] - inconsistent behavior of all filters derived from
itk::BinaryFunctorImageFilter

Improvement
[ITK-2896] - Add missing NumericTraits for complex
[ITK-2940] - MaskedFFTNormalizedCorrelationImageFilter should be
templated on MaskType
[ITK-2964] - CMake warnings about "Perhaps should you turn on more
WRAP_* options" not helpful.
[ITK-2977] - itkMatrix sometimes requires extra VNL includes, leading
to confusing linker errors
[ITK-2980] - STYLE: Make FEM Get/Set codes use itkMacros wherever possible
[ITK-2993] - Add Masking value to MaskImageFilter
[ITK-2996] - Improve speed bilateral filter (itk::BilateralImageFilter)
[ITK-3001] - itkGetObjectMacro pervasively hides the itkGetConstObjectMacro
[ITK-3008] - Apply cppcheck to ITK
[ITK-3016] - Allow the ClampImageFilter to use user-defined bounds
[ITK-3073] - Const Correctness Warning

New Feature
[ITK-2985] - Get the internal transforms of the itkSyNImageRegistrationMethod
[ITK-3005] - Add ITK icon to ITK wiki, doc and examples
Task
[ITK-2560] - Remove ITK_TEMPLATE_TXX
[ITK-2979] - Fix doxygen documentation
[ITK-3032] - Duplicate Source Code Versions of itkImagetoVTKImageFilter



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