I am using Linux and want to use open-source software only.
I find this software very useful:
http://mayavi.sourceforge.net/
http://www.paraview.org/New/index.html
Data format is that of VTK:
http://www.vtk.org/pdf/file-formats.pdf
Regards,
Maciej Marek
You may also want to check VisIt
https://wci.llnl.gov/codes/visit/
It handles natively many file formats, and you can also add you own
reader in C++.
Regards,
Max