They are quite small. The photo isn't showing a "single atom". It is showing optical photons emitted from what is claimed to be a single strontium atom, and the size of the dot is defined by the quality of the photographic system that generated the image, rather than any feature of the source.
You can use a high voltage electron microscope to image single atom on a surface composed a of a bunch of similar atoms, but we've been able to do that for ages.
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Bill Sloman, Sydney