I would tend to agree with Bif. Sounds like only 1 cylinder.
The check valves in the fuel system are probably not the issue. I believe (someone can correct me if I'm wrong) that in Normal mode, one fuel pump runs and I suspect it turns on/off as needed to maintain fuel pressure. In redundancy mode, the other fuel pump runs and it may stay on no matter what the fuel pressure is. So unless both check valves have failed mostly closed, I suspect that both are working ok.
I base the above on the sounds when the Engine master circuit breaker is pushed in. You can hear the primary pump whine for a second or 2 until the desired pressure is reached. If you have the switch in redundancy mode when you push in the Engine master circuit breaker, you hear the backup fuel pump whine and it won't stop. This operation makes sense as a "backup".
Might be worth pulling the spark plug wires off of one cylinder and seeing what happens then switching to the other cylinder.
Mark