SBOL Editors Weekly Update - Apr. 25th
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Tramy Nguyen
Apr 25, 2018, 2:05:00 PM4/25/18
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Google Summer of Code 2018:
Google has officially announced the 1,264 students that got accepted to this year's program. The SBOL editors would like to extend our biggest congratulations to Prem Singh and SunWoo Kang for getting accepted. Within the next three weeks, we look forward to introducing the two students to the SBOL community.
Prem Singh [GSoC Bio.]:
SunWoo Kang [GSoC Bio.]:
More information about this program can be found here.
News from this program are posted here.
A full timeline of this years program can be found here.
HARMONY:
Oxford, UK on Jun. 18th - 22nd
HARMONY is an annual hackathon meeting where computational biologists from the COMBINE community come together to discuss their current status on the development of data standards for the biology community.
We ask that those who plan on attending the SBOL breakout sessions to complete the survey so the editors could get a good idea on who to expect at the meeting, both locally and virtually.
SBOL Visual:
There have been active discussions going on for the next release of SBOL visual v2.1. You can view the active topics considered for v2.1 here.
We have two new SEPs ready for voting and will be open for voting within the next two days. To get more information and read up on the discussions about the two proposed SEPs, click on the links below.
SEP V011: Genomic context [Information] [Discussion] Vote Open Apr. 27th!
SEP V012: Transcription and translation end points [Information] [Discussion] Vote Open Apr. 27th!
SBOL Workshop @ SEED 2018:
Scottsdale, AZ on Jun. 3rd - 7th
SBOL will be holding a workshop at SEED on June 7th.
At this workshop, we will be having a variety of CAD tools presenting their take on how SBOL is used in their tool. So far, these are the tools that will be demoed at the workshop.
Repositories: SynBioHub and JBEI ICE
Design Tools: Cello, iBioSim, SBOLDesigner, and RBS Calculator
Test Tools: BOOST and TASBE
The SBOL workshop will be open to all SEED attendees.
Registration is required to attend the SBOL workshop.
Registration form is now open and will be FREE for all SEED attendees.
A registristration fee will be applied to non SEED attendees who wish to attend the SBOL workshop.
More information about what to expect at the SBOL workshop can be found here.
SBOL Data:
If you are a software developer and would like to support the latest data model in your tool, click on the links shown below to get the latest release and instructions on how to install. If you are encountering bugs while using the new release, let us know and report your issues to our GitHub issue tracker.
If you are curious to see what is in the SBOL data model 2.2, view the specification here.
For further questions regarding the implementation of these features, contact libsbol-team@googlegroups.com.
SBOL 2018 Workshops:
Mark your calendar! Here are a couple of workshops and conferences that we are planning on attending for this year.
SEED Scottsdale, AZ on Jun. 3rd - 7th
HARMONY Oxford, UK on Jun. 18th - 22nd
IWBDA Berkeley, CA on Jul. 31st - Aug. 3rd
COMBINE Boston, MA on Oct. 8th - 12th
iGEM Boston, MA on Oct 24th - 28th
Tramy Nguyen
Nic Roehner
Curtis Madsen
Angel Goñi-Moreno
Zach Palchick
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