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to sbml-sde
Hi
everyone! Thank you for your willingness to contribute to the development of
this new SBML package.
For
your reference, the working draft of the specification can be found here.
The
draft has a lot of discussion in the comments on issues that this working group
should address. This discussion continued into the call for a vote on developing
the package in sbml-discuss. To track progress on each issue, we would like to
hold discussion per issue on sbmlteam/sbml-specifications. Issues
will be tagged with “L3 Package: sde”. I will create the starting issues
shortly based on Lucian’s summary in sbml-discuss and results from the vote. In
summary, they are,
Decide
the name of the package
Determine
appropriate support for stochastic integrals
Decide
what details about noise should be included in the specification
Determine
an appropriate means for specifying stochastic integrals
Clarify
biological orientation
To
mitigate any potential bias (and to consolidate the record), I will not attempt
to paraphrase or summarize the discussion across various documents and pages. Instead,
I will restate text from the draft specification as a prompt for those who are
opinionated. Feel free to create additional issues through sbmlteam/sbml-specifications
as you see fit.