Executing SBML Runner tests from CMD

[Иван Борисов]

Hi,

I am developing a package for simulatition of sbml models.

Is there a common way to execute SBML tests from test suite in a command line mode without SBML Runner GUI?

Ivan

[Frank T. Bergmann]

Hello Ivan, 

I had the same problem in the past, and used some java classes, to add the simulator to the list of registered wrappers, run the tests i want to run, and (optionally remove the wrapper again). The code for this is in our github repository: 

https://github.com/copasi/COPASI/tree/develop/sbml-testsuite

best

Frank

[Иван Борисов]

Hello Frank,

Thanks for sharing your solution!

And do you know if some  (for example) linux terminal mode execution exists for SBML Runner ?

Ivan

[Frank T. Bergmann]

Indeed, if you look at: 

https://github.com/copasi/COPASI/blob/develop/sbml-testsuite/run_suite.cmake

the line: 

```

COMMAND "${JAVA_EXECUTABLE}"
	-cp "${CLASSPATH}"
	runSupportedParallel "${NAME}"
	${NUM_TRHEADS} ${SBML_LEVEL} ${SBML_VERSION}
	WORKING_DIRECTORY "${SRC_DIR}"

```

is doing what you want: 

so you will simply run the runSupportedParallel class with the arguments: 

* name of the registered wrapper

* number of threads to use

* sbml level

* sbml version 

For this to work the `testsuite-core.jar`, `simple-xml-2.6.4.jar` and the folder containing the class file have to be in the classpath. 

best

Frank

[Иван Борисов]

Frank,

I see, thank you!

Ivan