Wikipedia pages

Herbert M Sauro

unread,

Oct 24, 2022, 3:50:24 PM10/24/22

to sbml-d...@googlegroups.com

Dear community,

I’ve created a new Wikipedia page that lists simulation tools at

https://en.m.wikipedia.org/wiki/List_of_systems_biology_modeling_software

I felt this was needed.

I have so far created three drafts on pysces, pySB and ibiosim and one article on sbcsl (more to come). The draft pages haven’t been reviewed yet by Wikipedia admin. You should be able to get to them from the list page above. If you want me to added/change etc these pages let me know by emailing me at hsa...@uw.edu

For the sbcsl page there has been one admin comment the list page and pages that don’t relate to your tool. According to Wikipedia rules you *cannot* edit the page about your tool. If you want changes just send them to me.

Thanks

Herbert Sauro

--

Herbert Sauro, Professor

University of Washington, Bioengineering

206-685-2119, www.sys-bio.org

Mobile: 206-880-8093

hsa...@uw.edu

Books: http://books.analogmachine.org/

Alan Garny

unread,

Oct 24, 2022, 5:21:04 PM10/24/22

to sbml-d...@googlegroups.com

Thanks for this Herbert. I have added COR and OpenCOR to the list.

Alan

From: sbml-d...@googlegroups.com <sbml-d...@googlegroups.com> on behalf of Herbert M Sauro <hsa...@uw.edu>
Sent: Tuesday, 25 October 2022 8:49 am
To: sbml-d...@googlegroups.com <sbml-d...@googlegroups.com>
Subject: [sbml-discuss] Wikipedia pages

--
For questions or feedback about the sbml-discuss list,
contact sbml...@googlegroups.com
---
You received this message because you are subscribed to the Google Groups "sbml-discuss" group.
To unsubscribe from this group and stop receiving emails from it, send an email to sbml-discuss...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVLVxCkX8bzg0Y-GgoO_SpwK9uepzrp-h1rH%2BmaD5WUKw%40mail.gmail.com.

Herbert M Sauro

unread,

Oct 24, 2022, 5:22:20 PM10/24/22

to sbml-d...@googlegroups.com

Thanks, I spotted that addition .

On Mon, Oct 24, 2022 at 2:21 PM Alan Garny <a.g...@auckland.ac.nz> wrote:

Thanks for this Herbert. I have added COR and OpenCOR to the list.

Alan

From: sbml-d...@googlegroups.com <sbml-d...@googlegroups.com> on behalf of Herbert M Sauro <hsa...@uw.edu>
Sent: Tuesday, 25 October 2022 8:49 am
To: sbml-d...@googlegroups.com <sbml-d...@googlegroups.com>
Subject: [sbml-discuss] Wikipedia pages

Dear community,

I’ve created a new Wikipedia page that lists simulation tools at

https://en.m.wikipedia.org/wiki/List_of_systems_biology_modeling_software [en.m.wikipedia.org]

I felt this was needed.

I have so far created three drafts on pysces, pySB and ibiosim and one article on sbcsl (more to come). The draft pages haven’t been reviewed yet by Wikipedia admin. You should be able to get to them from the list page above. If you want me to added/change etc these pages let me know by emailing me at hsa...@uw.edu

For the sbcsl page there has been one admin comment the list page and pages that don’t relate to your tool. According to Wikipedia rules you *cannot* edit the page about your tool. If you want changes just send them to me.

Thanks

Herbert Sauro
--

Herbert Sauro, Professor
University of Washington, Bioengineering

206-685-2119, www.sys-bio.org [sys-bio.org]

Mobile: 206-880-8093

hsa...@uw.edu

Books: http://books.analogmachine.org/ [books.analogmachine.org]

--
For questions or feedback about the sbml-discuss list,
contact sbml...@googlegroups.com
---
You received this message because you are subscribed to the Google Groups "sbml-discuss" group.
To unsubscribe from this group and stop receiving emails from it, send an email to sbml-discuss...@googlegroups.com.

To view this discussion on the web visit https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVLVxCkX8bzg0Y-GgoO_SpwK9uepzrp-h1rH%2BmaD5WUKw%40mail.gmail.com [groups.google.com].

--
For questions or feedback about the sbml-discuss list,
contact sbml...@googlegroups.com
---
You received this message because you are subscribed to the Google Groups "sbml-discuss" group.
To unsubscribe from this group and stop receiving emails from it, send an email to sbml-discuss...@googlegroups.com.

To view this discussion on the web visit https://groups.google.com/d/msgid/sbml-discuss/ME2PR01MB3650010E4186F8F8FF8CE3BFDB2E9%40ME2PR01MB3650.ausprd01.prod.outlook.com [groups.google.com].

Herbert M Sauro

unread,

Oct 24, 2022, 5:26:50 PM10/24/22

to sbml-d...@googlegroups.com

Alan, I updated the openCor entry to say it uses CellML.

Herbert

Alan Garny

unread,

Oct 24, 2022, 5:29:19 PM10/24/22

to sbml-d...@googlegroups.com

It does in the description, but sure, no problem.

Alan

From: sbml-d...@googlegroups.com <sbml-d...@googlegroups.com> on behalf of Herbert M Sauro <hsa...@uw.edu>

Sent: Tuesday, 25 October 2022 10:25 am
To: sbml-d...@googlegroups.com <sbml-d...@googlegroups.com>
Subject: Re: [sbml-discuss] Wikipedia pages

To view this discussion on the web visit https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCWQmD8O%3DZmLzK37c7VYmDXP%3DouRb3pmB%3D%3D3vd3dL4aFXw%40mail.gmail.com.

Herbert M Sauro

unread,

Oct 24, 2022, 5:34:53 PM10/24/22

to sbml-d...@googlegroups.com

That's true, but I wanted to add it to the SBML column too. I've also added mention of CellML in the lead text. The lead text was added as a request from an admin. A lot of software lists don't have a lead paragraph however. When the page first went live it was quickly put onto the delete list but got pulled back from the abyss over the weekend.

Hebert

To view this discussion on the web visit https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCWQmD8O%3DZmLzK37c7VYmDXP%3DouRb3pmB%3D%3D3vd3dL4aFXw%40mail.gmail.com [groups.google.com].

--
For questions or feedback about the sbml-discuss list,
contact sbml...@googlegroups.com
---
You received this message because you are subscribed to the Google Groups "sbml-discuss" group.
To unsubscribe from this group and stop receiving emails from it, send an email to sbml-discuss...@googlegroups.com.

To view this discussion on the web visit https://groups.google.com/d/msgid/sbml-discuss/ME2PR01MB36503F57375A85035180946FDB2E9%40ME2PR01MB3650.ausprd01.prod.outlook.com [groups.google.com].

Macklin, Paul

unread,

Oct 24, 2022, 5:35:14 PM10/24/22

to sbml-d...@googlegroups.com

Thanks, Herbert!

Would you happen to mind adding PhysiCell and PhysiBoSS to the list? (Or is that something I’d be able to edit—I haven’t edited Wikipedia in a very long time!)

Best – Paul

-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-

Paul Macklin, Ph.D.

Associate Professor

2021/22 IU Luddy Faculty Fellow

Associate Department Chair

Intelligent Systems Engineering

Indiana University

Founder and Lead of PhysiCell and MultiCellDS

mobile: 626-372-1203
email: mack...@iu.edu

email: Paul.M...@MathCancer.org

web: MathCancer.org

Twitter: @MathCancer

From: sbml-d...@googlegroups.com <sbml-d...@googlegroups.com> on behalf of Herbert M Sauro <hsa...@uw.edu>
Date: Monday, October 24, 2022 at 3:50 PM
To: sbml-d...@googlegroups.com <sbml-d...@googlegroups.com>
Subject: [External] [sbml-discuss] Wikipedia pages

This message was sent from a non-IU address. Please exercise caution when clicking links or opening attachments from external sources.

--

For questions or feedback about the sbml-discuss list,
contact sbml...@googlegroups.com
---
You received this message because you are subscribed to the Google Groups "sbml-discuss" group.
To unsubscribe from this group and stop receiving emails from it, send an email to sbml-discuss...@googlegroups.com.

To view this discussion on the web visit https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVLVxCkX8bzg0Y-GgoO_SpwK9uepzrp-h1rH%2BmaD5WUKw%40mail.gmail.com.

Macklin, Paul

unread,

Oct 24, 2022, 5:55:43 PM10/24/22

to sbml-d...@googlegroups.com

Just surviving a round of Wikipedia editors is an accomplishment!

-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-
Paul Macklin, Ph.D.
Associate Professor
Associate Department Chair

2021/22 IU Luddy Faculty Fellow

Intelligent Systems Engineering
Indiana University

Founder and Lead of PhysiCell and MultiCellDS

mobile: 626-372-1203
email: mack...@iu.edu
email: Paul.M...@MathCancer.org

web: http://MathCancer.org
Twitter: @MathCancer

From: sbml-d...@googlegroups.com <sbml-d...@googlegroups.com> on behalf of Herbert M Sauro <hsa...@uw.edu>
Date: Monday, October 24, 2022 at 5:35 PM
To: sbml-d...@googlegroups.com <sbml-d...@googlegroups.com>
Subject: [External] Re: [sbml-discuss] Wikipedia pages

This message was sent from a non-IU address. Please exercise caution when clicking links or opening attachments from external sources.

That's true, but I wanted to add it to the SBML column too. I've also added mention of CellML in the lead text. The lead text was added as a request from an admin. A lot of software lists don't have a lead paragraph however. When the page first went live it was quickly put onto the delete list but got pulled back from the abyss over the weekend.

Hebert

To view this discussion on the web visit https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCUHfN3doX%2BZPpdu8KJXLBCxrB4OrrGo_e3h4ODbQ_FiqA%40mail.gmail.com.

Pedro Mendes

unread,

Oct 24, 2022, 6:41:15 PM10/24/22

to sbml-d...@googlegroups.com

Great contribution, Herbert! It takes courage to get these pages going
in the face of the ruthless wikipedia vigilantes...

Let me know if I can help with anything on this page that I am not
conflicted with, or other pages.

I already see one minor change for COPASI, its license is called
"Artistic License" not "PERL" (and it even has a link of its own, as it
is indeed notable for being the license that established in court that
free software has value, even though it is free) I don't dare edit this
part of the page myself or it could put the whole page in jeopardy (I am
clearly conflicted).

Pedro

On 10/24/22 15:49, Herbert M Sauro wrote:
> Dear community,
>
> I’ve created a new Wikipedia page that lists simulation tools at
>

> https://en.m.wikipedia.org/wiki/List_of_systems_biology_modeling_software <https://en.m.wikipedia.org/wiki/List_of_systems_biology_modeling_software>

>
> I felt this was needed.
>
> I have so far created three drafts on pysces, pySB and ibiosim and one
> article on sbcsl (more to come). The draft pages haven’t been reviewed
> yet by Wikipedia admin. You should be able to get to them from the list
> page above. If you want me to added/change etc these pages let me know

> by emailing me at hsa...@uw.edu <mailto:hsa...@uw.edu>

>
> For the sbcsl page there has been one admin comment the list page and
> pages that don’t relate to your tool. According to Wikipedia rules you
> *cannot* edit the page about your tool. If you want changes just send
> them to me.
>
> Thanks
> Herbert Sauro
> --
> Herbert Sauro, Professor
> University of Washington, Bioengineering

> 206-685-2119, www.sys-bio.org <http://www.sys-bio.org>
> Mobile: 206-880-8093
> hsa...@uw.edu <mailto:hsa...@uw.edu>
> Books: http://books.analogmachine.org/ <http://books.analogmachine.org/>

>
> --
> For questions or feedback about the sbml-discuss list,
> contact sbml...@googlegroups.com
> ---
> You received this message because you are subscribed to the Google
> Groups "sbml-discuss" group.
> To unsubscribe from this group and stop receiving emails from it, send
> an email to sbml-discuss...@googlegroups.com

> <mailto:sbml-discuss...@googlegroups.com>.

> To view this discussion on the web visit

> https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVLVxCkX8bzg0Y-GgoO_SpwK9uepzrp-h1rH%2BmaD5WUKw%40mail.gmail.com <https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVLVxCkX8bzg0Y-GgoO_SpwK9uepzrp-h1rH%2BmaD5WUKw%40mail.gmail.com?utm_medium=email&utm_source=footer>.

--
Pedro Mendes, PhD
Professor and Director,
Richard D. Berlin Center for Cell Analysis and Modeling
University of Connecticut School of Medicine
group website: http://www.comp-sys-bio.org

Herbert M Sauro

unread,

Oct 24, 2022, 7:28:04 PM10/24/22

to sbml-d...@googlegroups.com

I wondered about the license, I can change it now. Fighting admins is not fun.

H

On Mon, Oct 24, 2022 at 3:41 PM Pedro Mendes <pme...@uchc.edu> wrote:

Great contribution, Herbert! It takes courage to get these pages going
in the face of the ruthless wikipedia vigilantes...

Let me know if I can help with anything on this page that I am not
conflicted with, or other pages.

I already see one minor change for COPASI, its license is called
"Artistic License" not "PERL" (and it even has a link of its own, as it
is indeed notable for being the license that established in court that
free software has value, even though it is free) I don't dare edit this
part of the page myself or it could put the whole page in jeopardy (I am
clearly conflicted).

Pedro

On 10/24/22 15:49, Herbert M Sauro wrote:
> Dear community,
>
> I’ve created a new Wikipedia page that lists simulation tools at
>

> https://urldefense.com/v3/__https://en.m.wikipedia.org/wiki/List_of_systems_biology_modeling_software__;!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfWuAvS3g$ <https://urldefense.com/v3/__https://en.m.wikipedia.org/wiki/List_of_systems_biology_modeling_software__;!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfWuAvS3g$ >

>
> I felt this was needed.
>
> I have so far created three drafts on pysces, pySB and ibiosim and one
> article on sbcsl (more to come). The draft pages haven’t been reviewed
> yet by Wikipedia admin. You should be able to get to them from the list
> page above. If you want me to added/change etc these pages let me know
> by emailing me at hsa...@uw.edu <mailto:hsa...@uw.edu>
>
> For the sbcsl page there has been one admin comment the list page and
> pages that don’t relate to your tool. According to Wikipedia rules you
> *cannot* edit the page about your tool. If you want changes just send
> them to me.
>
> Thanks
> Herbert Sauro
> --
> Herbert Sauro, Professor
> University of Washington, Bioengineering

> 206-685-2119, https://urldefense.com/v3/__http://www.sys-bio.org__;!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfyQ9lR-E$ <https://urldefense.com/v3/__http://www.sys-bio.org__;!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfyQ9lR-E$ >

> Mobile: 206-880-8093
> hsa...@uw.edu <mailto:hsa...@uw.edu>

> Books: https://urldefense.com/v3/__http://books.analogmachine.org/__;!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFf305VGrY$ <https://urldefense.com/v3/__http://books.analogmachine.org/__;!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFf305VGrY$ >

>
> --
> For questions or feedback about the sbml-discuss list,
> contact sbml...@googlegroups.com
> ---
> You received this message because you are subscribed to the Google
> Groups "sbml-discuss" group.
> To unsubscribe from this group and stop receiving emails from it, send
> an email to sbml-discuss...@googlegroups.com
> <mailto:sbml-discuss...@googlegroups.com>.
> To view this discussion on the web visit

> https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVLVxCkX8bzg0Y-GgoO_SpwK9uepzrp-h1rH*2BmaD5WUKw*40mail.gmail.com__;JSU!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfWBTfP7I$ <https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVLVxCkX8bzg0Y-GgoO_SpwK9uepzrp-h1rH*2BmaD5WUKw*40mail.gmail.com?utm_medium=email&utm_source=footer__;JSU!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfizbtyfA$ >.

--
Pedro Mendes, PhD
Professor and Director,
Richard D. Berlin Center for Cell Analysis and Modeling
University of Connecticut School of Medicine

group website: https://urldefense.com/v3/__http://www.comp-sys-bio.org__;!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfoRj4wLk$

--
For questions or feedback about the sbml-discuss list,
contact sbml...@googlegroups.com
---
You received this message because you are subscribed to the Google Groups "sbml-discuss" group.

To unsubscribe from this group and stop receiving emails from it, send an email to sbml-discuss...@googlegroups.com.
To view this discussion on the web visit https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/6f97c18e-9381-74df-a44e-2b16048df2bb*40uchc.edu__;JQ!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfI4OLRAM$ .

--

Herbert Sauro, Professor

University of Washington, Bioengineering

206-685-2119, www.sys-bio.org

Pedro Mendes

unread,

Oct 24, 2022, 7:48:19 PM10/24/22

to sbml-d...@googlegroups.com

I just spent some time editing the history section of Systems Biology
page (to once again mention MCA and BST), most likely to see it being
deleted sometime soon...

thanks for the quick correction!

Pedro

On 10/24/22 19:27, Herbert M Sauro wrote:
> I wondered about the license, I can change it now. Fighting admins is
> not fun.
>
> H
>
> On Mon, Oct 24, 2022 at 3:41 PM Pedro Mendes <pme...@uchc.edu
> <mailto:pme...@uchc.edu>> wrote:
>
> Great contribution, Herbert! It takes courage to get these pages going
> in the face of the ruthless wikipedia vigilantes...
>
> Let me know if I can help with anything on this page that I am not
> conflicted with, or other pages.
>
> I already see one minor change for COPASI, its license is called
> "Artistic License" not "PERL" (and it even has a link of its own, as it
> is indeed notable for being the license that established in court that
> free software has value, even though it is free) I don't dare edit
> this
> part of the page myself or it could put the whole page in jeopardy
> (I am
> clearly conflicted).
>
> Pedro
>
>
> On 10/24/22 15:49, Herbert M Sauro wrote:
> > Dear community,
> >
> > I’ve created a new Wikipedia page that lists simulation tools at
> >
> >

> https://urldefense.com/v3/__https://en.m.wikipedia.org/wiki/List_of_systems_biology_modeling_software__;!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfWuAvS3g$ <https://urldefense.com/v3/__https://en.m.wikipedia.org/wiki/List_of_systems_biology_modeling_software__;!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfWuAvS3g$> <https://urldefense.com/v3/__https://en.m.wikipedia.org/wiki/List_of_systems_biology_modeling_software__;!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfWuAvS3g$ <https://urldefense.com/v3/__https://en.m.wikipedia.org/wiki/List_of_systems_biology_modeling_software__;!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfWuAvS3g$> >

> >
> > I felt this was needed.
> >
> > I have so far created three drafts on pysces, pySB and ibiosim
> and one
> > article on sbcsl (more to come). The draft pages haven’t been
> reviewed
> > yet by Wikipedia admin. You should be able to get to them from
> the list
> > page above. If you want me to added/change etc these pages let me
> know
> > by emailing me at hsa...@uw.edu <mailto:hsa...@uw.edu>

> <mailto:hsa...@uw.edu <mailto:hsa...@uw.edu>>

> >
> > For the sbcsl page there has been one admin comment the list
> page and
> > pages that don’t relate to your tool. According to Wikipedia
> rules you
> > *cannot* edit the page about your tool. If you want changes just
> send
> > them to me.
> >
> > Thanks
> > Herbert Sauro
> > --
> > Herbert Sauro, Professor
> > University of Washington, Bioengineering
> > 206-685-2119,

> >
> > --
> > For questions or feedback about the sbml-discuss list,
> > contact sbml...@googlegroups.com

> <mailto:sbml...@googlegroups.com>

> > ---
> > You received this message because you are subscribed to the Google
> > Groups "sbml-discuss" group.
> > To unsubscribe from this group and stop receiving emails from it,
> send
> > an email to sbml-discuss...@googlegroups.com

> <mailto:sbml-discuss%2Bunsu...@googlegroups.com>
> > <mailto:sbml-discuss...@googlegroups.com
> <mailto:sbml-discuss%2Bunsu...@googlegroups.com>>.

> > To view this discussion on the web visit
> >

> https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVLVxCkX8bzg0Y-GgoO_SpwK9uepzrp-h1rH*2BmaD5WUKw*40mail.gmail.com__;JSU!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfWBTfP7I$ <https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVLVxCkX8bzg0Y-GgoO_SpwK9uepzrp-h1rH*2BmaD5WUKw*40mail.gmail.com__;JSU!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfWBTfP7I$> <https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVLVxCkX8bzg0Y-GgoO_SpwK9uepzrp-h1rH*2BmaD5WUKw*40mail.gmail.com?utm_medium=email&utm_source=footer__;JSU!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfizbtyfA$ <https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVLVxCkX8bzg0Y-GgoO_SpwK9uepzrp-h1rH*2BmaD5WUKw*40mail.gmail.com?utm_medium=email&utm_source=footer__;JSU!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfizbtyfA$> >.

>
> --
> Pedro Mendes, PhD
> Professor and Director,
> Richard D. Berlin Center for Cell Analysis and Modeling
> University of Connecticut School of Medicine
> group website:

> https://urldefense.com/v3/__http://www.comp-sys-bio.org__;!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfoRj4wLk$ <https://urldefense.com/v3/__http://www.comp-sys-bio.org__;!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfoRj4wLk$>

>
> --
> For questions or feedback about the sbml-discuss list,

> contact sbml...@googlegroups.com <mailto:sbml...@googlegroups.com>

> ---
> You received this message because you are subscribed to the Google
> Groups "sbml-discuss" group.
> To unsubscribe from this group and stop receiving emails from it,
> send an email to sbml-discuss...@googlegroups.com

> <mailto:sbml-discuss%2Bunsu...@googlegroups.com>.

> To view this discussion on the web visit

> https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/6f97c18e-9381-74df-a44e-2b16048df2bb*40uchc.edu__;JQ!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfI4OLRAM$ <https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/6f97c18e-9381-74df-a44e-2b16048df2bb*40uchc.edu__;JQ!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfI4OLRAM$> .

>
>
>
> --
> Herbert Sauro, Professor
> University of Washington, Bioengineering

> 206-685-2119, www.sys-bio.org <http://www.sys-bio.org>

> Mobile: 206-880-8093
> hsa...@uw.edu <mailto:hsa...@uw.edu>

> Books: http://books.analogmachine.org/ <http://books.analogmachine.org/>

>
> --
> For questions or feedback about the sbml-discuss list,
> contact sbml...@googlegroups.com
> ---
> You received this message because you are subscribed to the Google
> Groups "sbml-discuss" group.
> To unsubscribe from this group and stop receiving emails from it, send
> an email to sbml-discuss...@googlegroups.com
> <mailto:sbml-discuss...@googlegroups.com>.
> To view this discussion on the web visit

> https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVfhcNHTS5yxoZ7ZUQ7UiRtnomvGUU9OFxUN%2BnRTqjgfA%40mail.gmail.com <https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVfhcNHTS5yxoZ7ZUQ7UiRtnomvGUU9OFxUN%2BnRTqjgfA%40mail.gmail.com?utm_medium=email&utm_source=footer>.

--
Pedro Mendes, PhD
Professor and Director,
Richard D. Berlin Center for Cell Analysis and Modeling
University of Connecticut School of Medicine

group website: http://www.comp-sys-bio.org

Herbert M Sauro

unread,

Oct 24, 2022, 7:54:25 PM10/24/22

to sbml-d...@googlegroups.com

I looked at the sys bio page yesterday and it’s not great. I noticed someone had rewritten the history section so that everything starts at year 2000 with no mention of MCA or bst. If they delete your addition I’ll put it back in.

H

> 206-685-2119, https://urldefense.com/v3/__http://www.sys-bio.org__;!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVmoB-JTwA$ <https://urldefense.com/v3/__http://www.sys-bio.org__;!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVmoB-JTwA$ >

> Mobile: 206-880-8093
> hsa...@uw.edu <mailto:hsa...@uw.edu>

> Books: https://urldefense.com/v3/__http://books.analogmachine.org/__;!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVmtkSPOjY$ <https://urldefense.com/v3/__http://books.analogmachine.org/__;!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVmtkSPOjY$ >

>
> --
> For questions or feedback about the sbml-discuss list,
> contact sbml...@googlegroups.com
> ---
> You received this message because you are subscribed to the Google
> Groups "sbml-discuss" group.
> To unsubscribe from this group and stop receiving emails from it, send
> an email to sbml-discuss...@googlegroups.com
> <mailto:sbml-discuss...@googlegroups.com>.
> To view this discussion on the web visit

> https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVfhcNHTS5yxoZ7ZUQ7UiRtnomvGUU9OFxUN*2BnRTqjgfA*40mail.gmail.com__;JSU!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVm1Glb0lk$ <https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVfhcNHTS5yxoZ7ZUQ7UiRtnomvGUU9OFxUN*2BnRTqjgfA*40mail.gmail.com?utm_medium=email&utm_source=footer__;JSU!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVmtisL7kY$ >.

--
Pedro Mendes, PhD
Professor and Director,
Richard D. Berlin Center for Cell Analysis and Modeling
University of Connecticut School of Medicine

group website: https://urldefense.com/v3/__http://www.comp-sys-bio.org__;!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVmpwgTTc4$

--
For questions or feedback about the sbml-discuss list,
contact sbml...@googlegroups.com
---
You received this message because you are subscribed to the Google Groups "sbml-discuss" group.

To unsubscribe from this group and stop receiving emails from it, send an email to sbml-discuss...@googlegroups.com.
To view this discussion on the web visit https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/2b7b6628-040c-b33a-98c0-f678d8ad1c6c*40uchc.edu__;JQ!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVmV4NxtVo$ .

--

Herbert Sauro, Professor

University of Washington, Bioengineering

206-685-2119, www.sys-bio.org

Pedro Mendes

unread,

Oct 24, 2022, 8:04:40 PM10/24/22

to sbml-d...@googlegroups.com

When putting text back or fighting deletions it is important to add
comments in the talk page. I did that and included one reference to back
the addition (most likely should also add that reference to the main
page, but it can go later if they want to remove it)

Pedro

On 10/24/22 19:53, Herbert M Sauro wrote:
> I looked at the sys bio page yesterday and it’s not great. I noticed
> someone had rewritten the history section so that everything starts at
> year 2000 with no mention of MCA or bst. If they delete your addition
> I’ll put it back in.
>
> H
>
> On Mon, Oct 24, 2022 at 4:48 PM Pedro Mendes <pme...@uchc.edu
> <mailto:pme...@uchc.edu>> wrote:
>
> I just spent some time editing the history section of Systems Biology
> page (to once again mention MCA and BST), most likely to see it being
> deleted sometime soon...
>
> thanks for the quick correction!
>
> Pedro
>
> On 10/24/22 19:27, Herbert M Sauro wrote:
> > I wondered about the license, I can change it now. Fighting
> admins is
> > not fun.
> >
> > H
> >
> > On Mon, Oct 24, 2022 at 3:41 PM Pedro Mendes <pme...@uchc.edu
> <mailto:pme...@uchc.edu>

> > <mailto:pme...@uchc.edu <mailto:pme...@uchc.edu>>> wrote:
> >
> > Great contribution, Herbert! It takes courage to get these
> pages going
> > in the face of the ruthless wikipedia vigilantes...
> >
> > Let me know if I can help with anything on this page that I
> am not
> > conflicted with, or other pages.
> >
> > I already see one minor change for COPASI, its license is called
> > "Artistic License" not "PERL" (and it even has a link of its
> own, as it
> > is indeed notable for being the license that established in
> court that
> > free software has value, even though it is free) I don't
> dare edit
> > this
> > part of the page myself or it could put the whole page in
> jeopardy
> > (I am
> > clearly conflicted).
> >
> > Pedro
> >
> >
> > On 10/24/22 15:49, Herbert M Sauro wrote:
> > > Dear community,
> > >
> > > I’ve created a new Wikipedia page that lists simulation
> tools at
> > >
> > >
> >

> > > Mobile: 206-880-8093
> > > hsa...@uw.edu <mailto:hsa...@uw.edu> <mailto:hsa...@uw.edu

> > >
> > > --
> > > For questions or feedback about the sbml-discuss list,
> > > contact sbml...@googlegroups.com
> <mailto:sbml...@googlegroups.com>

> > <mailto:sbml...@googlegroups.com

> <mailto:sbml...@googlegroups.com>>
> > > ---
> > > You received this message because you are subscribed to
> the Google
> > > Groups "sbml-discuss" group.
> > > To unsubscribe from this group and stop receiving emails
> from it,
> > send
> > > an email to sbml-discuss...@googlegroups.com
> <mailto:sbml-discuss%2Bunsu...@googlegroups.com>

> > <mailto:sbml-discuss%2Bunsu...@googlegroups.com
> <mailto:sbml-discuss%252Buns...@googlegroups.com>>
> > > <mailto:sbml-discuss...@googlegroups.com
> <mailto:sbml-discuss%2Bunsu...@googlegroups.com>
> > <mailto:sbml-discuss%2Bunsu...@googlegroups.com
> <mailto:sbml-discuss%252Buns...@googlegroups.com>>>.

> > > To view this discussion on the web visit
> > >
> >

> >
> > --
> > Pedro Mendes, PhD
> > Professor and Director,
> > Richard D. Berlin Center for Cell Analysis and Modeling
> > University of Connecticut School of Medicine
> > group website:
> >

> https://urldefense.com/v3/__http://www.comp-sys-bio.org__;!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfoRj4wLk$ <https://urldefense.com/v3/__http://www.comp-sys-bio.org__;!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfoRj4wLk$> <https://urldefense.com/v3/__http://www.comp-sys-bio.org__;!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfoRj4wLk$ <https://urldefense.com/v3/__http://www.comp-sys-bio.org__;!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfoRj4wLk$>>

> >
> > --
> > For questions or feedback about the sbml-discuss list,
> > contact sbml...@googlegroups.com
> <mailto:sbml...@googlegroups.com>

> <mailto:sbml...@googlegroups.com <mailto:sbml...@googlegroups.com>>

> > ---
> > You received this message because you are subscribed to the
> Google
> > Groups "sbml-discuss" group.
> > To unsubscribe from this group and stop receiving emails from it,
> > send an email to sbml-discuss...@googlegroups.com
> <mailto:sbml-discuss%2Bunsu...@googlegroups.com>

> > <mailto:sbml-discuss%2Bunsu...@googlegroups.com
> <mailto:sbml-discuss%252Buns...@googlegroups.com>>.

> > To view this discussion on the web visit
> >

> https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/6f97c18e-9381-74df-a44e-2b16048df2bb*40uchc.edu__;JQ!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfI4OLRAM$ <https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/6f97c18e-9381-74df-a44e-2b16048df2bb*40uchc.edu__;JQ!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfI4OLRAM$> <https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/6f97c18e-9381-74df-a44e-2b16048df2bb*40uchc.edu__;JQ!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfI4OLRAM$ <https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/6f97c18e-9381-74df-a44e-2b16048df2bb*40uchc.edu__;JQ!!K-Hz7m0Vt54!iuDg08LSNsPKDxHtcxuOa_xULoqGfd6ay3ArjrYMad6zs4UA985SE4KtB4imhlzF2OSqLgFfI4OLRAM$>> .

> >
> >
> >
> > --
> > Herbert Sauro, Professor
> > University of Washington, Bioengineering
> > 206-685-2119,

> https://urldefense.com/v3/__http://www.sys-bio.org__;!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVmoB-JTwA$ <https://urldefense.com/v3/__http://www.sys-bio.org__;!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVmoB-JTwA$> <https://urldefense.com/v3/__http://www.sys-bio.org__;!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVmoB-JTwA$ <https://urldefense.com/v3/__http://www.sys-bio.org__;!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVmoB-JTwA$> >
> > Mobile: 206-880-8093

> > hsa...@uw.edu <mailto:hsa...@uw.edu> <mailto:hsa...@uw.edu
> <mailto:hsa...@uw.edu>>
> > Books:

> https://urldefense.com/v3/__http://books.analogmachine.org/__;!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVmtkSPOjY$ <https://urldefense.com/v3/__http://books.analogmachine.org/__;!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVmtkSPOjY$> <https://urldefense.com/v3/__http://books.analogmachine.org/__;!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVmtkSPOjY$ <https://urldefense.com/v3/__http://books.analogmachine.org/__;!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVmtkSPOjY$> >

> >
> > --
> > For questions or feedback about the sbml-discuss list,
> > contact sbml...@googlegroups.com

> <mailto:sbml...@googlegroups.com>
> > ---
> > You received this message because you are subscribed to the Google
> > Groups "sbml-discuss" group.
> > To unsubscribe from this group and stop receiving emails from it,
> send
> > an email to sbml-discuss...@googlegroups.com
> <mailto:sbml-discuss%2Bunsu...@googlegroups.com>
> > <mailto:sbml-discuss...@googlegroups.com
> <mailto:sbml-discuss%2Bunsu...@googlegroups.com>>.
> > To view this discussion on the web visit
> >

> https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVfhcNHTS5yxoZ7ZUQ7UiRtnomvGUU9OFxUN*2BnRTqjgfA*40mail.gmail.com__;JSU!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVm1Glb0lk$ <https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVfhcNHTS5yxoZ7ZUQ7UiRtnomvGUU9OFxUN*2BnRTqjgfA*40mail.gmail.com__;JSU!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVm1Glb0lk$> <https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVfhcNHTS5yxoZ7ZUQ7UiRtnomvGUU9OFxUN*2BnRTqjgfA*40mail.gmail.com?utm_medium=email&utm_source=footer__;JSU!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVmtisL7kY$ <https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVfhcNHTS5yxoZ7ZUQ7UiRtnomvGUU9OFxUN*2BnRTqjgfA*40mail.gmail.com?utm_medium=email&utm_source=footer__;JSU!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVmtisL7kY$> >.

>
> --
> Pedro Mendes, PhD
> Professor and Director,
> Richard D. Berlin Center for Cell Analysis and Modeling
> University of Connecticut School of Medicine
> group website:

> https://urldefense.com/v3/__http://www.comp-sys-bio.org__;!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVmpwgTTc4$ <https://urldefense.com/v3/__http://www.comp-sys-bio.org__;!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVmpwgTTc4$>

>
> --
> For questions or feedback about the sbml-discuss list,

> contact sbml...@googlegroups.com <mailto:sbml...@googlegroups.com>
> ---
> You received this message because you are subscribed to the Google
> Groups "sbml-discuss" group.
> To unsubscribe from this group and stop receiving emails from it,
> send an email to sbml-discuss...@googlegroups.com
> <mailto:sbml-discuss%2Bunsu...@googlegroups.com>.
> To view this discussion on the web visit

> https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/2b7b6628-040c-b33a-98c0-f678d8ad1c6c*40uchc.edu__;JQ!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVmV4NxtVo$ <https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/2b7b6628-040c-b33a-98c0-f678d8ad1c6c*40uchc.edu__;JQ!!K-Hz7m0Vt54!m9nDvgl3dHu0YePhk68k6E5q_CX11JdXgYt-4gN_b_UlI3Dn0qFZKGqp3FdB3xg6JF_U7bVmV4NxtVo$> .

>
> --
> Herbert Sauro, Professor
> University of Washington, Bioengineering

> 206-685-2119, www.sys-bio.org <http://www.sys-bio.org>

> Mobile: 206-880-8093
> hsa...@uw.edu <mailto:hsa...@uw.edu>

> Books: http://books.analogmachine.org/ <http://books.analogmachine.org/>

>
> --
> For questions or feedback about the sbml-discuss list,
> contact sbml...@googlegroups.com
> ---
> You received this message because you are subscribed to the Google
> Groups "sbml-discuss" group.
> To unsubscribe from this group and stop receiving emails from it, send
> an email to sbml-discuss...@googlegroups.com
> <mailto:sbml-discuss...@googlegroups.com>.
> To view this discussion on the web visit

> https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVwB_WFJe995NeTbmigFiF8hmS6FPpS%3DghSqCU4LUqRTw%40mail.gmail.com <https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVwB_WFJe995NeTbmigFiF8hmS6FPpS%3DghSqCU4LUqRTw%40mail.gmail.com?utm_medium=email&utm_source=footer>.

--
Pedro Mendes, PhD
Professor and Director,
Richard D. Berlin Center for Cell Analysis and Modeling
University of Connecticut School of Medicine

group website: http://www.comp-sys-bio.org

Herbert M Sauro

unread,

Oct 24, 2022, 8:06:53 PM10/24/22

to sbml-d...@googlegroups.com

I just saw your change and added a comment.

H

> 206-685-2119, https://urldefense.com/v3/__http://www.sys-bio.org__;!!K-Hz7m0Vt54!jMqlVbDyrznerEondkB2kfEGCKRNZbkWt05BAqVYclzciLoJwu5g5AhV8ecybit5sDlqpo2CGW28GWY$ <https://urldefense.com/v3/__http://www.sys-bio.org__;!!K-Hz7m0Vt54!jMqlVbDyrznerEondkB2kfEGCKRNZbkWt05BAqVYclzciLoJwu5g5AhV8ecybit5sDlqpo2CGW28GWY$ >

> Mobile: 206-880-8093
> hsa...@uw.edu <mailto:hsa...@uw.edu>

> Books: https://urldefense.com/v3/__http://books.analogmachine.org/__;!!K-Hz7m0Vt54!jMqlVbDyrznerEondkB2kfEGCKRNZbkWt05BAqVYclzciLoJwu5g5AhV8ecybit5sDlqpo2CDUL0YGA$ <https://urldefense.com/v3/__http://books.analogmachine.org/__;!!K-Hz7m0Vt54!jMqlVbDyrznerEondkB2kfEGCKRNZbkWt05BAqVYclzciLoJwu5g5AhV8ecybit5sDlqpo2CDUL0YGA$ >

>
> --
> For questions or feedback about the sbml-discuss list,
> contact sbml...@googlegroups.com
> ---
> You received this message because you are subscribed to the Google
> Groups "sbml-discuss" group.
> To unsubscribe from this group and stop receiving emails from it, send
> an email to sbml-discuss...@googlegroups.com
> <mailto:sbml-discuss...@googlegroups.com>.
> To view this discussion on the web visit

> https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVwB_WFJe995NeTbmigFiF8hmS6FPpS*3DghSqCU4LUqRTw*40mail.gmail.com__;JSU!!K-Hz7m0Vt54!jMqlVbDyrznerEondkB2kfEGCKRNZbkWt05BAqVYclzciLoJwu5g5AhV8ecybit5sDlqpo2CJotK6Pk$ <https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCVwB_WFJe995NeTbmigFiF8hmS6FPpS*3DghSqCU4LUqRTw*40mail.gmail.com?utm_medium=email&utm_source=footer__;JSU!!K-Hz7m0Vt54!jMqlVbDyrznerEondkB2kfEGCKRNZbkWt05BAqVYclzciLoJwu5g5AhV8ecybit5sDlqpo2C-MxNqbA$ >.

--
Pedro Mendes, PhD
Professor and Director,
Richard D. Berlin Center for Cell Analysis and Modeling
University of Connecticut School of Medicine

group website: https://urldefense.com/v3/__http://www.comp-sys-bio.org__;!!K-Hz7m0Vt54!jMqlVbDyrznerEondkB2kfEGCKRNZbkWt05BAqVYclzciLoJwu5g5AhV8ecybit5sDlqpo2CIDlBFHc$

--
For questions or feedback about the sbml-discuss list,
contact sbml...@googlegroups.com
---
You received this message because you are subscribed to the Google Groups "sbml-discuss" group.

To unsubscribe from this group and stop receiving emails from it, send an email to sbml-discuss...@googlegroups.com.
To view this discussion on the web visit https://urldefense.com/v3/__https://groups.google.com/d/msgid/sbml-discuss/f24f21b2-1034-a734-ac6d-bf9e1cfa8ccc*40uchc.edu__;JQ!!K-Hz7m0Vt54!jMqlVbDyrznerEondkB2kfEGCKRNZbkWt05BAqVYclzciLoJwu5g5AhV8ecybit5sDlqpo2CU9Gqcdo$ .

--

Herbert Sauro, Professor

University of Washington, Bioengineering

206-685-2119, www.sys-bio.org

Steve Andrews

unread,

Oct 26, 2022, 1:13:17 PM10/26/22

to sbml-d...@googlegroups.com

Hi all,

I just added several spatial simulators to the web page. They are: Smoldyn, MCell, SpringSaLaD, ReaDDy, Spatiocyte, URDME, and Cytosim. I still need to find DOIs for the references, but I think those entries are relatively complete otherwise.

-Steve

To view this discussion on the web visit https://groups.google.com/d/msgid/sbml-discuss/CAEFQOCW0W%2BO_CwCxQkjoQxH9epv4n4FN86QvUoFyk%2B_e%2BoBJ2A%40mail.gmail.com.

Reply all

Reply to author

Forward