New Release: SATe 2.2.6

[Jamie Oaks]

Version 2.2.6 of SATe has just been released:

    http://phylo.bio.ku.edu/software/sate/sate.html

Updates include:

    - [CHANGES] RNA sequence data is now fully supported. There was

                some inconsistency in previous versions as to whether

                RNA data was allowed to run (under some versions and

                configurations it was allowed to run as DNA data). This

                version internally converts RNA input to DNA and then

                converts the final results back to RNA.

    - [CHANGES] Updated the alignment length check that determines which

                MAFFT algorithm to use for alignment. Previously this

                checked the alignment length, it now uses the maximum

                unaligned sequence length.

    - [CHANGES] Better error messaging when input sequence labels

                conflict with tip labels of a user-provided starting

                tree. The error message now reports the problem and

                lists all of the mismatched labels.

    - [CHANGES] This version gives explicit warning messages when the

                user specifies a max subproblem argument that is equal

                to or greater than the number of tips. Under these

                conditions, the SATe algorithm is not invoked. The

                warning makes this more clear to the user.

    - [CHANGES] Many tests added to the test suite.