Hi Jeremy,
It's not clear from your message what kind of system you are
modeling.
In general, for the CSP system models, SAM uses a version of your
equation to calculate the hourly thermal output of the solar field.
The specific equations, and how SAM calculates the values of each term
in the equation depends on the technology (dish, power tower,
parabolic trough, etc), and on the performance model (physical trough,
empirical trough, etc.).
If you are using SAM's physical trough model to model a parabolic
trough system, you can read detailed descriptions of the calculations
in the trough reference manual:
Wagner, M. J.; Gilman, P. (2011). "Technical Manual for the SAM
Physical Trough Model." 124 pp.; NREL Report No. TP-5500-51825.
http://www.nrel.gov/docs/fy11osti/51825.pdf
For the other models, please see SAM's help system for a list of
references describing the calculations.
SAM does not explicitly report the incidence angle, but it does report
the hourly DNI values from the weather file and the calculated
incident DNI values (DNIxCosTH for the physical trough model).
Best regards,
Paul.