Cannot install salmon 1.3.0 on ubuntu on windows 10

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S Chhabra

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Aug 21, 2020, 1:26:57 PM8/21/20
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Hello,

I am new to RNA-seq data analysis and I am trying to install the latest version of salmon (1.3.0) on Ubuntu on Windows 10.

When I run sudo command to install salmon with the command:
``sudo apt-get install -y salmon``
and check the version
``salmon --version``
I get
salmon 0.12.0

I tried to download the binary file "salmon-1.3.0_linux_x86_64.tar.gz" from release page and decompress like so:
``tar xzvf salmon-1.3.0_linux_x86_64.tar.gz``
it decompresses the files and I see `bin` and `lib` directories. I then placed the bin directory file in my PATH using command ''PATH=$PATH:/mnt/c/Users/----/RNAseq/salmon-latest_linux_x86_64/bin/salmon.bin``
Now when I run
``salmon -h``
I get
Command 'salmon' not found, but can be installed with:

apt install salmon


Can anyone suggest a way to fix this issue? I will be analyzing Bacillus subtilis data, is there any downside of running the analysis on v0.12.0?

Thanks,
Shivani



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