Memory Allocation malloc error with Sailfish

[Diego Alzate Correa]

Hello

I'm trying to quantify the samples included with the Salmon tutorial, but is giving me a malloc error.  I'm using ANACONDA on  MacOS Catalina.

First, I had to separately download sailfish because wasn't included with the salmon package. So the first error was:

Processing sample DRR016125

-bash: sailfish: command not found

I solved this by downloading sailfish from biobuilds, but then I'm getting this error:

Processing sample DRR016125

sailfish(23259,0x105f71dc0) malloc: *** malloc_zone_unregister() failed for 0x7fff90f4f000

Most forums describe an error for Salmon and/or MacOS Sierra that is solved by updating the MacOS. 

I'm totally new on RNA-seq analysis and don't know how to continue. Should I try to change/update jemalloc?

Thank in advance.

Diego

[Anand]

You should post it here -  https://github.com/COMBINE-lab/salmon/issues

And I think you should start using salmon 

--
Sailfish is available at https://github.com/kingsfordgroup/sailfish
Citation:
Patro, Rob, Stephen M. Mount, and Carl Kingsford. "Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms." Nature biotechnology 32.5 (2014): 462-464.
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