Sage 9.4.beta2 released

[Volker Braun]

As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html 

46c5c53b4d (tag: 9.4.beta2, trac/develop) Updated SageMath version to 9.4.beta2

8b70b5bba7 Trac #31928: Failure when testing sage_conf version

826fe92cb6 Trac #31833: remove deprecated stuff in function factory

3ee4a426bc Trac #31829: fix doc detail in set partition

f13536ab0a Trac #31821: Run tests on combinatorial polyhedron

4a7ed9696c Trac #31816: Get rid of sage-pip-uninstall

c429cf8325 Trac #31815: python3: Upgrade to 3.9.5

7776cd1541 Trac #31810: Speedup number field element __getitem__ and for Gaussians

e7c96bf5f3 Trac #31809: WeilPolynomials segfault with squarefree=True

fb8d32171b Trac #31795: faster conversion between power series and polynomials

dc95374a4c Trac #31794: refine relint configuration and make it pass on combinat

a47ce39285 Trac #31793: some details in partitions

26f0031e04 Trac #31789: remove deprecated stuff in words

33227c71b7 Trac #31784: Mixed form name bug for pullback bundle

edf5ff8e48 Trac #31780: remove deprecation in free_module

066dee45e5 Trac #31779: more bijections for parallelogram polyominoes

19d4c34a4c Trac #31767: Enhanced checks for sign() with qqbar elements with addition and subtraction

b1f2788e4c Trac #31760: Speedup WordMorphism.growing_letters

448488c701 Trac #31759: Fix bug in WordMorphism.periodic_point

15a4387f3d Trac #31753: Bug in charpoly over discrete valuation rings

ce8c7303db Trac #31752: error when creating random polynomials

45adbc1ff2 Trac #31734: Add linestyle option to polygon2d

ce7572e422 Trac #31725: Implement meet, join, etc. methods for posets

afae1ae23b Trac #31721: Endow parents with __pow__

d1bfa2e4c5 Trac #31717: Empty families should be false

516f170369 Trac #31716: more scalar conversions

151e01da9f Trac #31710: taking the roots of CBF['x'](0) crashes Sage

3a08098e77 Trac #31708: Let gf2e and gfpn matrices stack on top of a vector

85cd76954b Trac #31705: sage.geometry.polyhedron: More lazy imports

7d21b32efe Trac #31704: Remove Python 2 compatibility from manifolds

30cb045f66 Trac #31700: eigenvalue defined in sage/matrix/matrix_symbolic_dense.pyx is incorrectly called in sage/modules/free_module_morphism.py

89289d09dd Trac #31699: setuptools/pip/pkgconfig/packaging/importlib-metadata upgrade for Sage 9.4

c6b6feb82c Trac #31669: Category of chain complexes: (co)homology functor

984feea49e Trac #31593: configure: Paths within $SAGE_LOCAL ($prefix) for sage_conf

0871b12176 Trac #31591: Expose MemoryAllocator as python package

57cd97207f Trac #31589: Normaliz 3.8.10, PyNormaliz 2.14

4363ed9915 Trac #31008: Upgrade NumPy to 1.20.3, SciPy 1.6.3, networkx 2.5.1

b14e8d1c93 Trac #29985: Make schemes doctests ready for random seeds

3814878a31 Trac #29984: Make symbolic doctests ready for random seeds

0664307a7e Trac #29983: Make finance doctests ready for random seeds

5f4b614072 Trac #29981: Make documentation doctests ready for random seeds

cf864e5968 Trac #29970: Make arith doctests ready for random seeds

f7292698d8 Trac #31893: Fix timeout in sageinspect.py tests

eb0eeb3621 Trac #31921: Knotinfo db interface looks for the wrong python module

667c748d07 Trac #31913: Relaxed padics segfault on 32-bit: libflint.so (_fmpz_clear_mpz)

2e7386bf9b Trac #28647: conversion of Symbolic Ring to FriCAS Expression Integer

d1c618875a Trac #27365: integration over polyhedron with induced measure

571bc46d13 Trac #11323: Fix ComplexNumber.__pow__  to allow float^complex

732c966cee Trac #31869: Fix segfault when multiplying x * ((3*i + 4)*x - 5)

20614c6ac7 Trac #31629: Fix a regression in show(obj) for string obj

4b103a8d37 Trac #31534: tox.ini: In -maximal environments, use IGNORE_MISSING_SYSTEM_PACKAGES=yes for all non-current distributions

3861157d5a Trac #31832: Update fplll 5.4.1, fpylll to 0.5.6 - adds support for gcc 11

30ee8d6505 (tag: 9.4.beta1) Updated SageMath version to 9.4.beta1

[David Coudert]

Thank you for this new beta.

I have a build error on a Intel MacBook Air with macOS 10.15.7, after make distclean, .bootstrap, source .homebrew-build-env, 

./configure and finally make.

I have installed numpy 1.20.3  with homebrew, but it is re-installed by sage and the new installation is not correct

Any help is more than welcome.

David.

cd '/Users/dcoudert/sage/build/pkgs/sagelib' && . '/Users/dcoudert/sage/src/bin/sage-src-env-config' && . '/Users/dcoudert/sage/src/bin/sage-env-config' && . '/Users/dcoudert/sage/src/bin/sage-env' && . '/Users/dcoudert/sage/build/bin/sage-build-env-config' && . '/Users/dcoudert/sage/build/bin/sage-build-env' && SAGE_SPKG_WHEELS=/Users/dcoudert/sage/local/var/lib/sage/wheels SAGE_INST_LOCAL=/Users/dcoudert/sage/local sage-logger -p '/Users/dcoudert/sage/build/pkgs/sagelib/spkg-install' '/Users/dcoudert/sage/logs/pkgs/sagelib-9.4.beta2.log'

[sagelib-9.4.beta2] Configured with: --prefix=/Library/Developer/CommandLineTools/usr --with-gxx-include-dir=/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include/c++/4.2.1

[sagelib-9.4.beta2] Discovering Python/Cython source code....

[sagelib-9.4.beta2] distributions = ['']

[sagelib-9.4.beta2] Discovered Python/Cython sources, time: 5.91 seconds.

[sagelib-9.4.beta2] running build

[sagelib-9.4.beta2] Generating auto-generated sources

[sagelib-9.4.beta2] Building interpreters for fast_callable

[sagelib-9.4.beta2] running build_cython

[sagelib-9.4.beta2] Enabling Cython debugging support

[sagelib-9.4.beta2] ************************************************************************

[sagelib-9.4.beta2] Traceback (most recent call last):

[sagelib-9.4.beta2]   File "/Users/dcoudert/sage/build/pkgs/sagelib/src/setup.py", line 96, in <module>

[sagelib-9.4.beta2]     code = setup(

[sagelib-9.4.beta2]   File "/Users/dcoudert/sage/local/lib/python3.9/site-packages/setuptools/__init__.py", line 153, in setup

[sagelib-9.4.beta2]     return distutils.core.setup(**attrs)

[sagelib-9.4.beta2]   File "/Users/dcoudert/sage/local/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 148, in setup

[sagelib-9.4.beta2]     dist.run_commands()

[sagelib-9.4.beta2]   File "/Users/dcoudert/sage/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 967, in run_commands

[sagelib-9.4.beta2]     self.run_command(cmd)

[sagelib-9.4.beta2]   File "/Users/dcoudert/sage/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 986, in run_command

[sagelib-9.4.beta2]     cmd_obj.run()

[sagelib-9.4.beta2]   File "/Users/dcoudert/sage/build/pkgs/sagelib/src/sage_setup/command/sage_build.py", line 37, in run

[sagelib-9.4.beta2]     build.run(self)

[sagelib-9.4.beta2]   File "/Users/dcoudert/sage/local/lib/python3.9/site-packages/setuptools/_distutils/command/build.py", line 135, in run

[sagelib-9.4.beta2]     self.run_command(cmd_name)

[sagelib-9.4.beta2]   File "/Users/dcoudert/sage/local/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 313, in run_command

[sagelib-9.4.beta2]     self.distribution.run_command(command)

[sagelib-9.4.beta2]   File "/Users/dcoudert/sage/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 986, in run_command

[sagelib-9.4.beta2]     cmd_obj.run()

[sagelib-9.4.beta2]   File "/Users/dcoudert/sage/build/pkgs/sagelib/src/sage_setup/command/sage_build_cython.py", line 211, in run

[sagelib-9.4.beta2]     self.sage_include_dirs = sage_include_directories(use_sources=True)

[sagelib-9.4.beta2]   File "/Users/dcoudert/sage/build/pkgs/sagelib/src/sage/env.py", line 376, in sage_include_directories

[sagelib-9.4.beta2]     import numpy

[sagelib-9.4.beta2]   File "/Users/dcoudert/sage/local/lib/python3.9/site-packages/numpy/__init__.py", line 145, in <module>

[sagelib-9.4.beta2]     from . import core

[sagelib-9.4.beta2]   File "/Users/dcoudert/sage/local/lib/python3.9/site-packages/numpy/core/__init__.py", line 22, in <module>

[sagelib-9.4.beta2]     from . import multiarray

[sagelib-9.4.beta2]   File "/Users/dcoudert/sage/local/lib/python3.9/site-packages/numpy/core/multiarray.py", line 12, in <module>

[sagelib-9.4.beta2]     from . import overrides

[sagelib-9.4.beta2]   File "/Users/dcoudert/sage/local/lib/python3.9/site-packages/numpy/core/overrides.py", line 7, in <module>

[sagelib-9.4.beta2]     from numpy.core._multiarray_umath import (

[sagelib-9.4.beta2] RuntimeError: NumPy was built with baseline optimizations: 

[sagelib-9.4.beta2] (SSE SSE2 SSE3 SSSE3 SSE41 POPCNT SSE42 AVX F16C FMA3 AVX2 AVX512F AVX512CD AVX512_SKX AVX512_CLX AVX512_CNL AVX512_ICL) but your machine doesn't support:

[sagelib-9.4.beta2] (AVX512F).

[sagelib-9.4.beta2] ************************************************************************

[sagelib-9.4.beta2] Error building the Sage library

[sagelib-9.4.beta2] ************************************************************************

[sagelib-9.4.beta2] Please email sage-devel (http://groups.google.com/group/sage-devel)

[sagelib-9.4.beta2] explaining the problem and including the relevant part of the log file

[sagelib-9.4.beta2]   /Users/dcoudert/sage/logs/pkgs/sagelib-9.4.beta2.log

[sagelib-9.4.beta2] Describe your computer, operating system, etc.

[sagelib-9.4.beta2] ************************************************************************

[sagelib-9.4.beta2] 

[sagelib-9.4.beta2] real 0m8.595s

[sagelib-9.4.beta2] user 0m1.665s

[sagelib-9.4.beta2] sys 0m1.330s

make[4]: *** [sagelib-SAGE_VENV-no-deps] Error 1

make[3]: *** [/Users/dcoudert/sage/local/var/lib/sage/installed/sagelib-9.4.beta2] Error 2

make[2]: *** [all-build] Error 2

real 0m9.441s

user 0m2.046s

sys 0m1.507s

***************************************************************

Error building Sage.

The following package(s) may have failed to build (not necessarily

during this run of 'make all-build'):

* package:         sagelib-9.4.beta2

  last build time: 20 jui 09:28

  log file:        /Users/dcoudert/sage/logs/pkgs/sagelib-9.4.beta2.log

It is safe to delete any log files and build directories, but they

contain information that is helpful for debugging build problems.

WARNING: If you now run 'make' again, the build directory of the

same version of the package will, by default, be deleted. Set the

environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this.

make[1]: *** [all-build] Error 1

make: *** [build] Error 2

[Dima Pasechnik]

On Sun, Jun 20, 2021 at 8:34 AM David Coudert <david....@gmail.com> wrote:
>
> Thank you for this new beta.
>
> I have a build error on a Intel MacBook Air with macOS 10.15.7, after make distclean, .bootstrap, source .homebrew-build-env,
> ./configure and finally make.
> I have installed numpy 1.20.3 with homebrew, but it is re-installed by sage and the new installation is not correct

we wish one could just install system numpy and use it, but we are not
there yet.

What you describe can be attributed to updating the tools (or OS) in
the middle of the build.
Can you

make numpy-clean
make numpy
make build

again ?

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[Dima Pasechnik]

maybe also

make sagelib-clean

before

make build

[David Coudert]

Not working (I also did sagelib-clean)  :(

sapristi:sage dcoudert$ make build -j1

/Library/Developer/CommandLineTools/usr/bin/make build/make/Makefile --stop

make[1]: `build/make/Makefile' is up to date.

build/bin/sage-logger \

"cd build/make && ./install 'base-toolchain'" logs/install.log

*** ALL ENVIRONMENT VARIABLES BEFORE BUILD: ***

ACLOCAL_PATH=/usr/local/opt/gettext/share/aclocal:/usr/local/opt/gettext/share/aclocal:/usr/local/opt/gettext/share/aclocal:/usr/local/opt/gettext/share/aclocal:/usr/local/opt/gettext/share/aclocal:

CPATH=/usr/local/opt/ntl/include:/usr/local/opt/bzip2/include:/usr/local/opt/readline/include:/usr/local/include:/usr/local/opt/ntl/include:/usr/local/opt/bzip2/include:/usr/local/opt/readline/include:/usr/local/include:/usr/local/opt/ntl/include:/usr/local/opt/bzip2/include:/usr/local/opt/readline/include:/usr/local/include:/usr/local/opt/ntl/include:/usr/local/opt/bzip2/include:/usr/local/opt/readline/include:/usr/local/include:/usr/local/opt/ntl/include:/usr/local/opt/bzip2/include:/usr/local/opt/readline/include:/usr/local/include

CPLEX_HOME=/Applications/CPLEX_Studio1210

DOT_SAGE=/Users/dcoudert/.sage

GRB_LICENSE_FILE=/Users/dcoudert/gurobi.lic

GUROBI_HOME=/Library/gurobi811/mac64

HOME=/Users/dcoudert

LANG=fr_FR.UTF-8

LIBRARY_PATH=/usr/local/opt/ntl/lib:/usr/local/opt/bzip2/lib:/usr/local/opt/readline/lib:/usr/local/lib:/usr/local/opt/ntl/lib:/usr/local/opt/bzip2/lib:/usr/local/opt/readline/lib:/usr/local/lib:/usr/local/opt/ntl/lib:/usr/local/opt/bzip2/lib:/usr/local/opt/readline/lib:/usr/local/lib:/usr/local/opt/ntl/lib:/usr/local/opt/bzip2/lib:/usr/local/opt/readline/lib:/usr/local/lib:/usr/local/opt/ntl/lib:/usr/local/opt/bzip2/lib:/usr/local/opt/readline/lib:/usr/local/lib

LOGNAME=dcoudert

LaunchInstanceID=3C3EC403-D547-4498-AA74-D137AE14FF3D

MAKE=make

MAKEFLAGS= V=1

MAKELEVEL=1

MFLAGS=

PATH=/Users/dcoudert/sage/build/bin:/Users/dcoudert/sage/src/bin:/Users/dcoudert/sage/local/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/gettext/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/gettext/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/gettext/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/gettext/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/gettext/bin:/Users/dcoudert/git-trac-command/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/Library/Apple/usr/bin

PKG_CONFIG_PATH=/usr/local/opt/zlib/lib/pkgconfig:/usr/local/opt/sqlite/lib/pkgconfig:/usr/local/opt/readline/lib/pkgconfig:/usr/local/opt/openssl/lib/pkgconfig:/usr/local/opt/openblas/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr/local/opt/zlib/lib/pkgconfig:/usr/local/opt/sqlite/lib/pkgconfig:/usr/local/opt/readline/lib/pkgconfig:/usr/local/opt/openssl/lib/pkgconfig:/usr/local/opt/openblas/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr/local/opt/zlib/lib/pkgconfig:/usr/local/opt/sqlite/lib/pkgconfig:/usr/local/opt/readline/lib/pkgconfig:/usr/local/opt/openssl/lib/pkgconfig:/usr/local/opt/openblas/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr/local/opt/zlib/lib/pkgconfig:/usr/local/opt/sqlite/lib/pkgconfig:/usr/local/opt/readline/lib/pkgconfig:/usr/local/opt/openssl/lib/pkgconfig:/usr/local/opt/openblas/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr/local/opt/zlib/lib/pkgconfig:/usr/local/opt/sqlite/lib/pkgconfig:/usr/local/opt/readline/lib/pkgconfig:/usr/local/opt/openssl/lib/pkgconfig:/usr/local/opt/openblas/lib/pkgconfig:/usr/local/lib/pkgconfig:

PWD=/Users/dcoudert/sage/build/make

PYTHONPATH=/Users/dcoudert/sage/local

SAGE_ENV_CONFIG_SOURCED=1

SAGE_LOCAL=/Users/dcoudert/sage/local

SAGE_LOGFILE=logs/install.log

SAGE_LOGS=/Users/dcoudert/sage/logs/pkgs

SAGE_NUM_THREADS=1

SAGE_NUM_THREADS_PARALLEL=8

SAGE_ORIG_PATH=/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/gettext/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/gettext/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/gettext/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/gettext/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/gettext/bin:/Users/dcoudert/git-trac-command/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/Library/Apple/usr/bin

SAGE_ORIG_PATH_SET=True

SAGE_PKGCONFIG=/Users/dcoudert/sage/local/lib/pkgconfig

SAGE_ROOT=/Users/dcoudert/sage

SAGE_SHARE=/Users/dcoudert/sage/local/share

SAGE_SRC=/Users/dcoudert/sage/src

SECURITYSESSIONID=186a6

SHELL=/bin/bash

SHLVL=4

SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.UrmclevFdH/Listeners

TERM=xterm-256color

TERM_PROGRAM=Apple_Terminal

TERM_PROGRAM_VERSION=433

TERM_SESSION_ID=9FFFB793-84B5-46BB-9E04-4B267CFDEF14

TMPDIR=/var/folders/5q/t180zjs936d_lt3p1cz3mql4000_hf/T/

USER=dcoudert

XPC_FLAGS=0x0

XPC_SERVICE_NAME=0

_=/usr/bin/env

__CF_USER_TEXT_ENCODING=0x2A0E:0x0:0x1

***********************************************

make --no-print-directory toolchain

make[2]: Nothing to be done for `toolchain'.

real 0m0.104s

user 0m0.077s

sys 0m0.015s

Sage build/upgrade complete!

/Library/Developer/CommandLineTools/usr/bin/make all-build

/Library/Developer/CommandLineTools/usr/bin/make build/make/Makefile --stop

make[2]: `build/make/Makefile' is up to date.

build/bin/sage-logger \

"cd build/make && ./install 'all-build'" logs/install.log

*** ALL ENVIRONMENT VARIABLES BEFORE BUILD: ***

ACLOCAL_PATH=/usr/local/opt/gettext/share/aclocal:/usr/local/opt/gettext/share/aclocal:/usr/local/opt/gettext/share/aclocal:/usr/local/opt/gettext/share/aclocal:/usr/local/opt/gettext/share/aclocal:

CPATH=/usr/local/opt/ntl/include:/usr/local/opt/bzip2/include:/usr/local/opt/readline/include:/usr/local/include:/usr/local/opt/ntl/include:/usr/local/opt/bzip2/include:/usr/local/opt/readline/include:/usr/local/include:/usr/local/opt/ntl/include:/usr/local/opt/bzip2/include:/usr/local/opt/readline/include:/usr/local/include:/usr/local/opt/ntl/include:/usr/local/opt/bzip2/include:/usr/local/opt/readline/include:/usr/local/include:/usr/local/opt/ntl/include:/usr/local/opt/bzip2/include:/usr/local/opt/readline/include:/usr/local/include

CPLEX_HOME=/Applications/CPLEX_Studio1210

DOT_SAGE=/Users/dcoudert/.sage

GRB_LICENSE_FILE=/Users/dcoudert/gurobi.lic

GUROBI_HOME=/Library/gurobi811/mac64

HOME=/Users/dcoudert

LANG=fr_FR.UTF-8

LIBRARY_PATH=/usr/local/opt/ntl/lib:/usr/local/opt/bzip2/lib:/usr/local/opt/readline/lib:/usr/local/lib:/usr/local/opt/ntl/lib:/usr/local/opt/bzip2/lib:/usr/local/opt/readline/lib:/usr/local/lib:/usr/local/opt/ntl/lib:/usr/local/opt/bzip2/lib:/usr/local/opt/readline/lib:/usr/local/lib:/usr/local/opt/ntl/lib:/usr/local/opt/bzip2/lib:/usr/local/opt/readline/lib:/usr/local/lib:/usr/local/opt/ntl/lib:/usr/local/opt/bzip2/lib:/usr/local/opt/readline/lib:/usr/local/lib

LOGNAME=dcoudert

LaunchInstanceID=3C3EC403-D547-4498-AA74-D137AE14FF3D

MAKE=make

MAKEFLAGS= V=1

MAKELEVEL=2

MFLAGS=

PATH=/Users/dcoudert/sage/build/bin:/Users/dcoudert/sage/src/bin:/Users/dcoudert/sage/local/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/gettext/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/gettext/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/gettext/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/gettext/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/gettext/bin:/Users/dcoudert/git-trac-command/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/Library/Apple/usr/bin

PKG_CONFIG_PATH=/usr/local/opt/zlib/lib/pkgconfig:/usr/local/opt/sqlite/lib/pkgconfig:/usr/local/opt/readline/lib/pkgconfig:/usr/local/opt/openssl/lib/pkgconfig:/usr/local/opt/openblas/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr/local/opt/zlib/lib/pkgconfig:/usr/local/opt/sqlite/lib/pkgconfig:/usr/local/opt/readline/lib/pkgconfig:/usr/local/opt/openssl/lib/pkgconfig:/usr/local/opt/openblas/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr/local/opt/zlib/lib/pkgconfig:/usr/local/opt/sqlite/lib/pkgconfig:/usr/local/opt/readline/lib/pkgconfig:/usr/local/opt/openssl/lib/pkgconfig:/usr/local/opt/openblas/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr/local/opt/zlib/lib/pkgconfig:/usr/local/opt/sqlite/lib/pkgconfig:/usr/local/opt/readline/lib/pkgconfig:/usr/local/opt/openssl/lib/pkgconfig:/usr/local/opt/openblas/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr/local/opt/zlib/lib/pkgconfig:/usr/local/opt/sqlite/lib/pkgconfig:/usr/local/opt/readline/lib/pkgconfig:/usr/local/opt/openssl/lib/pkgconfig:/usr/local/opt/openblas/lib/pkgconfig:/usr/local/lib/pkgconfig:

PWD=/Users/dcoudert/sage/build/make

PYTHONPATH=/Users/dcoudert/sage/local

SAGE_ENV_CONFIG_SOURCED=1

SAGE_LOCAL=/Users/dcoudert/sage/local

SAGE_LOGFILE=logs/install.log

SAGE_LOGS=/Users/dcoudert/sage/logs/pkgs

SAGE_NUM_THREADS=1

SAGE_NUM_THREADS_PARALLEL=8

SAGE_ORIG_PATH=/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/gettext/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/gettext/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/gettext/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/gettext/bin:/usr/local/opt/texinfo/bin:/usr/local/opt/bzip2/bin:/usr/local/opt/gettext/bin:/Users/dcoudert/git-trac-command/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/Library/Apple/usr/bin

SAGE_ORIG_PATH_SET=True

SAGE_PKGCONFIG=/Users/dcoudert/sage/local/lib/pkgconfig

SAGE_ROOT=/Users/dcoudert/sage

SAGE_SHARE=/Users/dcoudert/sage/local/share

SAGE_SRC=/Users/dcoudert/sage/src

SECURITYSESSIONID=186a6

SHELL=/bin/bash

SHLVL=4

SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.UrmclevFdH/Listeners

TERM=xterm-256color

TERM_PROGRAM=Apple_Terminal

TERM_PROGRAM_VERSION=433

TERM_SESSION_ID=9FFFB793-84B5-46BB-9E04-4B267CFDEF14

TMPDIR=/var/folders/5q/t180zjs936d_lt3p1cz3mql4000_hf/T/

USER=dcoudert

XPC_FLAGS=0x0

XPC_SERVICE_NAME=0

_=/usr/bin/env

__CF_USER_TEXT_ENCODING=0x2A0E:0x0:0x1

***********************************************

make --no-print-directory /Users/dcoudert/sage/local/var/lib/sage/installed/.dummy

make[3]: `/Users/dcoudert/sage/local/var/lib/sage/installed/.dummy' is up to date.

make --no-print-directory /Users/dcoudert/sage/local/var/lib/sage/installed/.dummy

make[3]: `/Users/dcoudert/sage/local/var/lib/sage/installed/.dummy' is up to date.

make --no-print-directory /Users/dcoudert/sage/local/var/lib/sage/installed/.dummy

make[3]: `/Users/dcoudert/sage/local/var/lib/sage/installed/.dummy' is up to date.

make --no-print-directory /Users/dcoudert/sage/local/var/lib/sage/installed/.dummy

make[3]: `/Users/dcoudert/sage/local/var/lib/sage/installed/.dummy' is up to date.

make --no-print-directory all-sage

make --no-print-directory sagelib-SAGE_VENV-no-deps

cd '/Users/dcoudert/sage/build/pkgs/sagelib' && . '/Users/dcoudert/sage/src/bin/sage-src-env-config' && . '/Users/dcoudert/sage/src/bin/sage-env-config' && . '/Users/dcoudert/sage/src/bin/sage-env' && . '/Users/dcoudert/sage/build/bin/sage-build-env-config' && . '/Users/dcoudert/sage/build/bin/sage-build-env' && SAGE_SPKG_WHEELS=/Users/dcoudert/sage/local/var/lib/sage/wheels SAGE_INST_LOCAL=/Users/dcoudert/sage/local sage-logger -p '/Users/dcoudert/sage/build/pkgs/sagelib/spkg-install' '/Users/dcoudert/sage/logs/pkgs/sagelib-9.4.beta2.log'

[sagelib-9.4.beta2] Configured with: --prefix=/Library/Developer/CommandLineTools/usr --with-gxx-include-dir=/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include/c++/4.2.1

[sagelib-9.4.beta2] Discovering Python/Cython source code....

[sagelib-9.4.beta2] distributions = ['']

[sagelib-9.4.beta2] Discovered Python/Cython sources, time: 3.49 seconds.

[sagelib-9.4.beta2] running build

[sagelib-9.4.beta2] Generating auto-generated sources

[sagelib-9.4.beta2] Building interpreters for fast_callable

[sagelib-9.4.beta2] -> First build of interpreters

[sagelib-9.4.beta2] real 0m6.860s

[sagelib-9.4.beta2] user 0m2.224s

[sagelib-9.4.beta2] sys 0m1.317s

make[4]: *** [sagelib-SAGE_VENV-no-deps] Error 1

make[3]: *** [/Users/dcoudert/sage/local/var/lib/sage/installed/sagelib-9.4.beta2] Error 2

make[2]: *** [all-build] Error 2

real 0m8.657s

user 0m2.685s

sys 0m1.501s

***************************************************************

Error building Sage.

The following package(s) may have failed to build (not necessarily

during this run of 'make all-build'):

* package:         sagelib-9.4.beta2

  last build time: 20 jui 11:43

  log file:        /Users/dcoudert/sage/logs/pkgs/sagelib-9.4.beta2.log

It is safe to delete any log files and build directories, but they

contain information that is helpful for debugging build problems.

WARNING: If you now run 'make' again, the build directory of the

same version of the package will, by default, be deleted. Set the

environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this.

make[1]: *** [all-build] Error 1

make: *** [build] Error 2

To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/CAAWYfq0azwLdMBOBq7Gj5Kn2A3J%2BM9WwSXd5ADyXaHgnVtML_g%40mail.gmail.com.

[Dima Pasechnik]

this seems to be a numpy bug,
or perhaps we use different compiler configurations to build numpy and
to build sagelib --- this would be a Sage bug, perhaps - but on the
other hand the compiler/CPU characteristics
seem to be taken from numpy in

[sagelib-9.4.beta2] from . import overrides
[sagelib-9.4.beta2] File
"/Users/dcoudert/sage/local/lib/python3.9/site-packages/numpy/core/overrides.py",
line 7, in <module>
[sagelib-9.4.beta2] from numpy.core._multiarray_umath import (
[sagelib-9.4.beta2] RuntimeError: NumPy was built with baseline optimizations:
[sagelib-9.4.beta2] (SSE SSE2 SSE3 SSSE3 SSE41 POPCNT SSE42 AVX F16C
FMA3 AVX2 AVX512F AVX512CD AVX512_SKX AVX512_CLX AVX512_CNL
AVX512_ICL) but your machine doesn't support:
[sagelib-9.4.beta2] (AVX512F).

But numpy config is such a black box....

Dima

> To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/743D2339-7ED7-4540-AF62-F7AE9866EF28%40gmail.com.

[Matthias Köppe]

Related to this is https://trac.sagemath.org/ticket/31565

[David Coudert]

So I think I have to wait (and try to go back to previous beta).

Thanks,

David.

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[Dima Pasechnik]

Please see https://trac.sagemath.org/ticket/32021 for this issue.

Did you build/install numpy in an unusual way?

[Kenji Iohara]

Hello,

 Thanks for this new version. On my mac book pro OS 11.3, 

 after reinstalling the packages recommended when we execute ./configure, it compiled from the first built.

 But when I tried, brew install ... and brew upgrade as was also indicated after brew instal ...; for some packages,; 

 I couldn't compile it. 

Kenji

 

2021年6月21日(月) 14:38 Dima Pasechnik <dim...@gmail.com>:

To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/ae00f81a-40a0-4a3a-95ae-0fe2fe20766fn%40googlegroups.com.

[David Coudert]

After distclean, I just did

./boostrap

source .homebrew-build-env

./configure

make build

I have also install lumpy with homebrew but it is apparently not taken into account.

So I think I did nothing unusual.

David.

To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/ae00f81a-40a0-4a3a-95ae-0fe2fe20766fn%40googlegroups.com.

[Justin C. Walker]

> On Jun 19, 2021, at 14:01 , Volker Braun <vbrau...@gmail.com> wrote:
>
> As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html

Built from a fresh clone of the develop tree on macOS 10.13.6 (2017 iMac Pro, 18-core Xeon W). Testing (‘ptestlong’) had one failure:

sage -t --long --warn-long 70.4 --random-seed=0 src/sage/graphs/bipartite_graph.py # 1 doctest failed

The failure was intermittent: in a loop, the failure occurred about 5% of the time.

Justin

--
Justin C. Walker, Curmudgeon at Large
Institute for the Absorption of Federal Funds
-----------
If it weren't for carbon-14, I wouldn't date at all.
-----------

[Samuel Lelièvre]

2021-06-22 19:52 UTC, 'Justin C. Walker' via sage-release:

>
> Built from a fresh clone of the develop tree on macOS 10.13.6
> (2017 iMac Pro, 18-core Xeon W).
> Testing (‘ptestlong’) had one failure:
>
> sage -t --long --warn-long 70.4 --random-seed=0 src/sage/graphs/bipartite_graph.py # 1 doctest failed
>
> The failure was intermittent: in a loop, the failure occurred about 5% of the time.

On macOS 10.14.6, I also get this failure intermittently (also in Sage
9.4.beta3).
```
$ ./sage -t --long --random-seed=0 src/sage/graphs/bipartite_graph.py
Running doctests with ID 2021-06-28-11-23-02-ee62df2f.
Git branch: develop
Using --optional=build,dochtml,homebrew,pip,sage,sage_spkg
Doctesting 1 file.
sage -t --long --warn-long 71.8 --random-seed=0
src/sage/graphs/bipartite_graph.py
**********************************************************************
File "src/sage/graphs/bipartite_graph.py", line 329, in
sage.graphs.bipartite_graph.BipartiteGraph.__init__
Failed example:
print(round(get_memory_usage() - start_mem))
Expected:
0.0
Got:
1.0
**********************************************************************
1 item had failures:
1 of 14 in sage.graphs.bipartite_graph.BipartiteGraph.__init__
[320 tests, 1 failure, 2.13 s]
----------------------------------------------------------------------
sage -t --long --warn-long 71.8 --random-seed=0

src/sage/graphs/bipartite_graph.py # 1 doctest failed

----------------------------------------------------------------------
Total time for all tests: 2.2 seconds
cpu time: 2.1 seconds
cumulative wall time: 2.1 seconds
Pytest is not installed, skip checking tests that rely on it.
```

Related tickets:

- Memory leak in bipartite_graph
https://trac.sagemath.org/ticket/31313

- Add gc.collect() to the memleak test from #31313
https://trac.sagemath.org/ticket/31671

Might be worth a new ticket.

[Justin C. Walker]

> On Jun 19, 2021, at 14:01 , Volker Braun <vbrau...@gmail.com> wrote:
>

> As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html

Built from a fresh clone of the develop tree on macOS 10.15.7 (2019 MBP, 8-core Core i9).

No problems in the build, and all tests (‘ptestlong’) passed!

Justin

--
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Institute for the Enhancement of the Director's Income
--------
When LuteFisk is outlawed,
Only outlaws will have LuteFisk
--------