Sage 10.4.beta2 released

[Volker Braun]

As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html

8ea5214695f (github/develop, tag: 10.4.beta2) Updated SageMath version to 10.4.beta2
6d187b153b5 gh-37764: ECM-related tests fail after an incremental build
551139c09f2 gh-37763: Fix tolerance for scipy 1.13
03be519274f gh-37755: src/sage/graphs/graph_decompositions/tdlib.pyx: Use -std=c++11
4d88e898e20 gh-37753: Added rank check to doctest in `.gauss_on_polys`
9971cec6423 gh-37736: Reimplementing the Witt (Sym Func) change of basis, caches, and omega involution
3df3305a649 gh-37725: Fix typo/phrasing in README.md
01333dfec1a gh-37721: Renamed "ring" argument of matrix contructor to "base_ring"
bcbb58f10a8 gh-37720: pkgs/sagemath-repl/pyproject.toml.m4: Declare extra 'sphinx'
08d5d97336d gh-37712: src/tox.ini (rst): Add missing Sphinx roles
253169ff7b8 gh-37707: Implement an iterator for absolute number fields
35f34ee0f66 gh-37703: Implement an is_nilpotent() method for matrices
0a16c78b4e2 gh-37699: Add `approximate_closest_vector` to `IntegerLattice`, using Babai's nearest plane algorithm
9d788cb1973 gh-37689: Fix changes.html in doc preview
6925269840b gh-37688: typo
12a003eddd0 gh-37687: provide a construction functor using a single functor for families
3c9a67a2f0f gh-37683: some shortcuts using bool
1ab35e3a696 gh-37680: a few more uses of "in Fields()"
654ed08b899 gh-37679: simplifications in symmetric_ideal.py
042153b0d97 gh-37677: some simplifications in moment-angle complex
0de7848873b gh-37674: some pep8 and ruff cleanups in modules/
014ccc31c41 gh-37673: upgrade msolve to 0.6.5
93cc7064532 gh-37672: src/sage/modular/quasimodform/ring.py: Fix pycodestyle warning
cf431c8d403 gh-37671: pkgs/sagemath-standard: Support gpep517
2c71f81f0d8 gh-37668: Wrong results in is_isotopic method of the Link class for certain chiral link
5801382f063 gh-37667: Fix noexcept clauses (#37560)
cf365e5e51d gh-37663: sage/rings/{complex,real}*: Untitlecase titles, add refs to libraries
59bf21efe75 gh-37661: some cross-references btw doc of RR, RBF, ...
2fd04522f3c gh-37660: Fix e302 libs pyx
03f81897de2 gh-37659: fix ruff codes UP012 and UP023
81b4ddccd1d gh-37655: Removed caching of determinant in LLL for the `NTL:LLL`-algorithm
74a82d7ce44 gh-37652: fix typos and no "Algebra" in the doc
34539cdb4b6 gh-37651: use parent in asymptotic ring
7a5ba77a93c gh-37640: Modified `.is_reduced()` of `binary_qf.py` to avoid square root computation
d4ab336474b gh-37639: add Legendre transform and suspension for lazy symmetric functions
3c174ef6a69 gh-37638: use strings as label in modular-decomposition trees
6ab45f666ba gh-37637: Update jupyter-sphinx to version 0.5.3 and pin thebe to version 0.8.2
8e26e275720 gh-37634: The Glaisher-Franklin bijections on integer partitions
13a555d970e gh-37606: Border matrix
58e8c578fdc gh-37563: trying a change in unique_representation
294eed40414 gh-37546: Sphinx ext links for Sage source files
14da417689b gh-37497: remove zombie code
59ced5e363e gh-37425: Remove mention of patchbot, remove 'make buildbot-python3'
fbaec798ee1 gh-37391: Make installation of "wheel" packages less noisy
7855be08498 gh-37361: Add iterators, Whitney numbers, characteristic polynomial, etc
031064b9cee gh-37340: Add class FlatsMatroid
ad0a4b03b3e gh-37332: Cleaning in pautomorphicform.py
72b13b5ebfe gh-37266: Scipy 1.12
42363696933 gh-37224: build/pkgs/python_flint: New
39419374b30 gh-37120: build/pkgs/*/distros/pyodide.txt: New, corresponding to pyodide 0.25.0
2f5d9f119ee gh-36999: Rename `install-requires.txt` to `version_requirements.txt`
071499fa7ce gh-36965: Update system package info for slackware
057bd868333 gh-36390: add simple function to count irreducible polynomials over 𝔽q
1cd49900cda (tag: 10.4.beta1) Updated SageMath version to 10.4.beta1

[Emmanuel Charpentier]

FWIW, upgrading 10.4.beta1 to 10.4.beta2 and running ptestlong succeedes without any failure on both Debian testing and Ubuntu 22.04 LTS running under WSL2 on Windows 11.

HTH,

[Henri Girard]

The same on wsl2, build fine  on 24.04 , but impossible to get it build on 24.04 ubuntu dualboot, error with numpy and cypari I got cypari working wwith pip but numpy is the right version but not found !

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[G. M.-S.]

This is on an Apple Silicon Mac M1 Pro with Homebrew up to date, on macOS 12.7.4 (Xcode 14.2).

After 

make

make pytest

(which succeed)

make ptestlong

gives the following:

----------------------------------------------------------------------
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/misc/sagedoc.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/doc/en/thematic_tutorials/sandpile.rst  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/sandpiles/sandpile.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/misc/cachefunc.pyx  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/misc/sageinspect.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/env.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/parallel/decorate.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/doc/en/developer/coding_basics.rst  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/sets/set_from_iterator.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage_setup/find.py  # 2 doctests failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/repl/ipython_tests.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/repl/interface_magic.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/misc/sphinxify.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/structure/mutability.pyx  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/structure/dynamic_class.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage_docbuild/builders.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/misc/bindable_class.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage_setup/clean.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage_docbuild/__main__.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/databases/findstat.py  # 1 doctest failed
----------------------------------------------------------------------

1)

sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage_setup/find.py  # 2 doctests failed
**********************************************************************
File "src/sage_setup/find.py", line 373, in sage_setup.find.installed_files_by_module
Failed example:
    f1
Expected:
    'sage/structure/__init__.py'
Got:
    '/Users/user/Library/Caches/com.apple.python/Users/user/SageMath/Git/sage/src/sage/structure/__init__.cpython-39.pyc'
**********************************************************************
File "src/sage_setup/find.py", line 375, in sage_setup.find.installed_files_by_module
Failed example:
    f2
Expected:
    'sage/structure/....pyc'
Got:
    'sage/structure/__init__.py'
**********************************************************************

2)

**********************************************************************
File "src/sage_setup/clean.py", line 104, in sage_setup.clean._find_stale_files
Failed example:
    for f in stale_iter:
        if f.endswith(skip_extensions): continue
        if '/ext_data/' in f: continue
        print('Found stale file: ' + f)
Expected nothing
Got:
    Found stale file: /Users/user/Library/Caches/com.apple.python/Users/user/SageMath/Git/sage/src/sage/all_cmdline.cpython-39.pyc
    […]
    Found stale file: /Users/user/Library/Caches/com.apple.python/Users/user/SageMath/Git/sage/src/sage/monoids/monoid.cpython-39.pyc
**********************************************************************
(2196 files listed)

3)

sage -t --long --random-seed=298963765858564779323702122744135832800 src/doc/en/developer/coding_basics.rst  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/doc/en/thematic_tutorials/sandpile.rst  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage_docbuild/builders.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/databases/findstat.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/misc/bindable_class.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/misc/cachefunc.pyx  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage_docbuild/__main__.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/misc/sagedoc.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/misc/sageinspect.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/misc/sphinxify.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/parallel/decorate.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/repl/interface_magic.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/repl/ipython_tests.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/sandpiles/sandpile.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/sets/set_from_iterator.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/structure/dynamic_class.py  # 1 doctest failed
sage -t --long --random-seed=298963765858564779323702122744135832800 src/sage/structure/mutability.pyx  # 1 doctest failed

give doctests warnings on the lines of

**********************************************************************
File "src/sage/misc/sagedoc.py", line 213, in sage.misc.sagedoc.detex
Failed example:
    detex(r'Some math: `n \geq k`.  A website: \url{sagemath.org}.')
Expected:
    'Some math: n >= k.  A website: sagemath.org.\n'
Got:
    doctest:warning
      File "<doctest sage.misc.sagedoc.detex[1]>", line 1, in <module>
        detex(r'Some math: `n \geq k`.  A website: \url{sagemath.org}.')
      File "/Users/user/SageMath/Git/sage/src/sage/misc/sagedoc.py", line 250, in detex
        s = sphinxify(s, format='text')
      File "/Users/user/SageMath/Git/sage/src/sage/misc/sphinxify.py", line 121, in sphinxify
        sphinx_app = Sphinx(srcdir, confdir, outdir, doctreedir, format,
      File "/Users/user/SageMath/Git/sage/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sphinx/application.py", line 229, in __init__
        self.setup_extension(extension)
      File "/Users/user/SageMath/Git/sage/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sphinx/application.py", line 406, in setup_extension
        self.registry.load_extension(self, extname)
      File "/Users/user/SageMath/Git/sage/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sphinx/registry.py", line 447, in load_extension
        mod = import_module(extname)
      File "/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/lib/python3.9/importlib/__init__.py", line 127, in import_module
        return _bootstrap._gcd_import(name[level:], package, level)
      File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
      File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
      File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
      File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
      File "<frozen importlib._bootstrap_external>", line 850, in exec_module
      File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
      File "/Users/user/SageMath/Git/sage/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sphinx/builders/linkcheck.py", line 18, in <module>
        from requests.exceptions import ConnectionError, HTTPError, SSLError, TooManyRedirects
      File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
      File "<frozen importlib._bootstrap>", line 972, in _find_and_load_unlocked
      File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
      File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
      File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
      File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
      File "<frozen importlib._bootstrap_external>", line 850, in exec_module
      File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
      File "/Users/user/SageMath/Git/sage/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/requests/__init__.py", line 43, in <module>
        import urllib3
      File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
      File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
      File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
      File "<frozen importlib._bootstrap_external>", line 850, in exec_module
      File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
      File "/Users/user/SageMath/Git/sage/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/urllib3/__init__.py", line 34, in <module>
        warnings.warn(
      File "/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/lib/python3.9/warnings.py", line 109, in _showwarnmsg
        sw(msg.message, msg.category, msg.filename, msg.lineno,
    :
    urllib3.exceptions.NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: https://github.com/urllib3/urllib3/issues/3020
    'Some math: n >= k.  A website: sagemath.org.\n'
**********************************************************************

HTH,

Guillermo