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Jun 19, 2022, 11:39:44 AMJun 19

to sage-release

As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html

f8df80820d (tag: 9.7.beta3, trac/develop) Updated SageMath version to 9.7.beta3

b466c8ae02 Trac #33973: Deprecate handling of $...$ in docstrings

e79f6ff49a Trac #33966: KnotInfo interface returns wrong braid_notation for the unknot

dd0ed537ff Trac #33965: Implement the Khovanov polynomial

b912ff4ce1 Trac #33960: add interface to Pari's L-function for genus 2 curves

9721af4be8 Trac #33939: compute ℓ-division fields for elliptic curves over finite fields

f89a56bf80 Trac #33876: Make ModularFormsRing.gen_forms returns GradedModularFormElement object

02f0d2d6c0 Trac #33804: bug in conversion from some number fields to SR

954af85f40 Trac #33790: sage.libs.ecl, sage.interfaces.maxima*: Do not use ECL_TMP

89d7b9e31e Trac #33554: Correct the behavior of methods first_coloring and all_graph_colorings

b47732deff Trac #33365: Add interface to nauty-genbg (generator of bipartite graphs with given bipartition)

8907ed5040 Trac #33316: Drop support for GCC < 6.3 in Sage 9.7

b96cba51f2 Trac #33829: sage.graphs: Do not use SAGE_TMP in doctests

eca52b24ab Trac #33922: Add missing title to conf.py

e9bfcd2dd8 Trac #33980: codespell in graphs: fix a few typos

28f70e0932 Trac #31153: Fix latex of elements of multivariate polynomial quotient ring

b36c11c5d7 Trac #33983: sage_setup: Add missing dependency

6edac51d8b Trac #33970: Remove a period sneaked in the documentation website

6d60bf357f Trac #33977: fix pycodestyle E306 in geometry and schemes

edd7a74ed3 Trac #33976: some pycodestyle fixes in pxd and pxi files

b0973afaa7 Trac #33975: get rid of commented old-style prints

b3d6a0b8ff Trac #33956: some better .join with iterator inside

a33f2df893 Trac #33949: get rid of have_ring option in singular interface

ad1c3ac34f Trac #33946: fix pycodestyle E306 in rings and algebras

4942ca958b Trac #33945: fix pycodestyle E306 outside of algebras,rings,graphs,schemes,categories

8dad9ce80f Trac #30683: Nu Tamari

346b3b04a5 Trac #33968: Replace $...$ in docstrings by `...`

f793558dd1 Trac #33967: sage -t: Print git commit hash and SAGE_LOCAL, SAGE_VENV

0e48fececd Trac #33963: wrong sign for symbolic Legendre polynomial at 0

34d562ee2b Trac #33962: wrong sign for value of Legendre polynomial at 0

bd33f87651 Trac #33961: compute square roots modulo powers of two in polynomial time

16af958d67 Trac #33940: enhance maple interface

8d921a4996 Trac #33872: Upgrade memory allocator to 0.1.3

29499f89e2 Trac #33871: Don't run singular in spkg-configure.m4 when cross compiling

4cc978b96c Trac #33823: sage -t --optional='sage,!FEATURE'

6b6f0cf0f4 Trac #33776: move method distance_graph to graph.py

65e866a5b1 Trac #23443: More Schubert polynomial shenanigans

a6e696e91d (tag: 9.7.beta2) Updated SageMath version to 9.7.beta2

b466c8ae02 Trac #33973: Deprecate handling of $...$ in docstrings

e79f6ff49a Trac #33966: KnotInfo interface returns wrong braid_notation for the unknot

dd0ed537ff Trac #33965: Implement the Khovanov polynomial

b912ff4ce1 Trac #33960: add interface to Pari's L-function for genus 2 curves

9721af4be8 Trac #33939: compute ℓ-division fields for elliptic curves over finite fields

f89a56bf80 Trac #33876: Make ModularFormsRing.gen_forms returns GradedModularFormElement object

02f0d2d6c0 Trac #33804: bug in conversion from some number fields to SR

954af85f40 Trac #33790: sage.libs.ecl, sage.interfaces.maxima*: Do not use ECL_TMP

89d7b9e31e Trac #33554: Correct the behavior of methods first_coloring and all_graph_colorings

b47732deff Trac #33365: Add interface to nauty-genbg (generator of bipartite graphs with given bipartition)

8907ed5040 Trac #33316: Drop support for GCC < 6.3 in Sage 9.7

b96cba51f2 Trac #33829: sage.graphs: Do not use SAGE_TMP in doctests

eca52b24ab Trac #33922: Add missing title to conf.py

e9bfcd2dd8 Trac #33980: codespell in graphs: fix a few typos

28f70e0932 Trac #31153: Fix latex of elements of multivariate polynomial quotient ring

b36c11c5d7 Trac #33983: sage_setup: Add missing dependency

6edac51d8b Trac #33970: Remove a period sneaked in the documentation website

6d60bf357f Trac #33977: fix pycodestyle E306 in geometry and schemes

edd7a74ed3 Trac #33976: some pycodestyle fixes in pxd and pxi files

b0973afaa7 Trac #33975: get rid of commented old-style prints

b3d6a0b8ff Trac #33956: some better .join with iterator inside

a33f2df893 Trac #33949: get rid of have_ring option in singular interface

ad1c3ac34f Trac #33946: fix pycodestyle E306 in rings and algebras

4942ca958b Trac #33945: fix pycodestyle E306 outside of algebras,rings,graphs,schemes,categories

8dad9ce80f Trac #30683: Nu Tamari

346b3b04a5 Trac #33968: Replace $...$ in docstrings by `...`

f793558dd1 Trac #33967: sage -t: Print git commit hash and SAGE_LOCAL, SAGE_VENV

0e48fececd Trac #33963: wrong sign for symbolic Legendre polynomial at 0

34d562ee2b Trac #33962: wrong sign for value of Legendre polynomial at 0

bd33f87651 Trac #33961: compute square roots modulo powers of two in polynomial time

16af958d67 Trac #33940: enhance maple interface

8d921a4996 Trac #33872: Upgrade memory allocator to 0.1.3

29499f89e2 Trac #33871: Don't run singular in spkg-configure.m4 when cross compiling

4cc978b96c Trac #33823: sage -t --optional='sage,!FEATURE'

6b6f0cf0f4 Trac #33776: move method distance_graph to graph.py

65e866a5b1 Trac #23443: More Schubert polynomial shenanigans

a6e696e91d (tag: 9.7.beta2) Updated SageMath version to 9.7.beta2

Jun 19, 2022, 4:05:54 PMJun 19

to sage-release

Thanks, Volker.

This is on Apple Silicon Macs with Homebrew up to date and make pytest.

This is on Apple Silicon Macs with Homebrew up to date and make pytest.

On macOS 11.6.7 (Big Sur) with Xcode 13.2.1 and macOS 12.4 (Monterey) with Xcode 13.4.1 make ptestlong gives

----------------------------------------------------------------------

sage -t --long --warn-long 56.2 --random-seed=30333023414362206299073208274839856651 src/sage/modular/overconvergent/hecke_series.py # Timed out

----------------------------------------------------------------------

sage -t --long --warn-long 56.2 --random-seed=30333023414362206299073208274839856651 src/sage/modular/overconvergent/hecke_series.py # Timed out

----------------------------------------------------------------------

which is due to the fact that the following

sage: hecke_series(5, 7, 10000, 5, modformsring=True) # long time (3.4s)

takes forever. This was not the case for 9.7.beta2.

Otherwise, on macOS 11.6.7 (Big Sur) with Xcode 13.2.1 make ptestlong gives also the usual:

----------------------------------------------------------------------

sage -t --long --warn-long 56.2 --random-seed=30333023414362206299073208274839856651 src/sage/matrix/matrix_gf2e_dense.pyx # 1 doctest failed

----------------------------------------------------------------------

----------------------------------------------------------------------

(see https://trac.sagemath.org/ticket/33212 and https://bitbucket.org/malb/m4rie/issues/23/trying-to-compile-on-apple-m1).

Guillermo

Jun 19, 2022, 5:06:22 PMJun 19

to sage-r...@googlegroups.com

Most likely

Trac #33876: Make ModularFormsRing.gen_forms returns

GradedModularFormElement object

> --

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Trac #33876: Make ModularFormsRing.gen_forms returns

GradedModularFormElement object

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Jun 19, 2022, 5:37:01 PMJun 19

to sage-release

Thanks Vincent, you are right. David is taking care of it.

Guillermo

Jun 19, 2022, 6:28:11 PMJun 19

to sage-r...@googlegroups.com

> On Jun 19, 2022, at 08:39 , Volker Braun <vbrau...@gmail.com> wrote:

>

> As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html

No problems with the builds. Testing (‘ptestlong’) yielded the following problems:

10.14.6: two failures, the usual (for this system) symbolic/integration/external.py; and the recently reported failure of modular/overconvergent/hecke_series.py

10.15.7: one failures, the recently reported failure of modular/overconvergent/hecke_series.py

Logs available if needed.

Justin

--

Justin C. Walker, Curmudgeon at Large

Institute for the Absorption of Federal Funds

--

Democracy is two wolves and a lamb

voting on what to have for lunch.

Liberty is a well-armed lamb contesting

the vote.

Jun 20, 2022, 9:00:35 AMJun 20

to sage-release

Thanks for the new release.

On Ubuntu 20.04 running on Xeon E5-2623 + 16 GB RAM:

- build (-j16) from a fresh git clone with system Python (3.8.10): OK (*)

- make ptestlong --> all tests passed except for src/sage/modular/overconvergent/hecke_series.py,

(*) the Ubuntu package python3-venv had to be installed for the system Python to be used, cf.

Eric.

Jun 20, 2022, 9:05:26 PMJun 20

to sage-release

I don't know when these errors started to appear, but I am getting the following failures:

Using --optional=4ti2,bliss,coxeter3,debian,e_antic,fricas,gap_packages,latte_int,libsemigroups,lidia,meataxe,normaliz,pip,sage,sage_spkg,tides

Features to be detected: 4ti2,benzene,bliss,buckygen,conway_polynomials,csdp,database_cremona_ellcurve,database_cremona_mini_ellcurve,database_jones_numfield,database_knotinfo,dvipng,gfan,graphviz,imagemagick,jupymake,kenzo,latte_int,lrslib,mcqd,meataxe,msolve,nauty,palp,pandoc,pdf2svg,pdftocairo,phitigra,plantri,polytopes_db,polytopes_db_4d,pynormaliz,python_igraph,rubiks,sage.combinat,sage.geometry.polyhedron,sage.graphs,sage.groups,sage.plot,sage.rings.number_field,sage.rings.padics,sage.rings.real_double,sage.symbolic,sage_numerical_backends_coin,sagemath_doc_html,sphinx,tdlib

Doctesting 2 files using 24 threads.

sage -t --warn-long 41.4 --random-seed=318832280051652493374019680328048210704 src/sage/calculus/calculus.py

**********************************************************************

File "src/sage/calculus/calculus.py", line 387, in sage.calculus.calculus

Failed example:

integrate(exp(t)/(t + 1)^2, t, algorithm="giac")

Expected:

(t*Ei(t + 1) + Ei(t + 1) - e^(t + 1))/(t*e + e)

Got:

((t + 1)*(1/(t + 1) - 1)*Ei(-(t + 1)*(1/(t + 1) - 1) + 1) - Ei(-(t + 1)*(1/(t + 1) - 1) + 1) + e^(-(t + 1)*(1/(t + 1) - 1) + 1))/((t + 1)*(1/(t + 1) - 1)*e - e)

**********************************************************************

1 item had failures:

1 of 118 in sage.calculus.calculus

[463 tests, 1 failure, 6.98 s]

sage -t --warn-long 41.4 --random-seed=318832280051652493374019680328048210704 src/sage/groups/perm_gps/permgroup_named.py

**********************************************************************

File "src/sage/groups/perm_gps/permgroup_named.py", line 2737, in sage.groups.perm_gps.permgroup_named.PSL.ramification_module_decomposition_hurwitz_curve

Failed example:

G.ramification_module_decomposition_hurwitz_curve() # random, optional - gap_packages

Exception raised:

Traceback (most recent call last):

File "/home/travis/sage/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/doctest/forker.py", line 695, in _run

self.compile_and_execute(example, compiler, test.globs)

File "/home/travis/sage/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/doctest/forker.py", line 1093, in compile_and_execute

exec(compiled, globs)

File "<doctest sage.groups.perm_gps.permgroup_named.PSL.ramification_module_decomposition_hurwitz_curve[1]>", line 1, in <module>

G.ramification_module_decomposition_hurwitz_curve() # random, optional - gap_packages

File "/home/travis/sage/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/groups/perm_gps/permgroup_named.py", line 2758, in ramification_module_decomposition_hurwitz_curve

libgap.Read(Path(SAGE_EXTCODE) / 'gap' / 'joyner' /

File "sage/libs/gap/element.pyx", line 2519, in sage.libs.gap.element.GapElement_Function.__call__ (build/cythonized/sage/libs/gap/element.c:19854)

a = [x if isinstance(x, GapElement) else libgap(x) for x in args]

File "sage/structure/parent.pyx", line 897, in sage.structure.parent.Parent.__call__ (build/cythonized/sage/structure/parent.c:9488)

return mor._call_(x)

File "sage/structure/coerce_maps.pyx", line 161, in sage.structure.coerce_maps.DefaultConvertMap_unique._call_ (build/cythonized/sage/structure/coerce_maps.c:4770)

raise

File "sage/structure/coerce_maps.pyx", line 156, in sage.structure.coerce_maps.DefaultConvertMap_unique._call_ (build/cythonized/sage/structure/coerce_maps.c:4662)

return C._element_constructor(x)

File "sage/libs/gap/libgap.pyx", line 317, in sage.libs.gap.libgap.Gap._element_constructor_ (build/cythonized/sage/libs/gap/libgap.c:3851)

x = str(x._libgap_init_())

AttributeError: 'PosixPath' object has no attribute '_libgap_init_'

**********************************************************************

File "src/sage/groups/perm_gps/permgroup_named.py", line 2787, in sage.groups.perm_gps.permgroup_named.PSL.ramification_module_decomposition_modular_curve

Failed example:

G.ramification_module_decomposition_modular_curve() # random, optional - gap_packages

Exception raised:

Traceback (most recent call last):

File "/home/travis/sage/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/doctest/forker.py", line 695, in _run

self.compile_and_execute(example, compiler, test.globs)

File "/home/travis/sage/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/doctest/forker.py", line 1093, in compile_and_execute

exec(compiled, globs)

File "<doctest sage.groups.perm_gps.permgroup_named.PSL.ramification_module_decomposition_modular_curve[1]>", line 1, in <module>

G.ramification_module_decomposition_modular_curve() # random, optional - gap_packages

File "/home/travis/sage/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/groups/perm_gps/permgroup_named.py", line 2802, in ramification_module_decomposition_modular_curve

libgap.Read(Path(SAGE_EXTCODE) / 'gap' / 'joyner' /

File "sage/libs/gap/element.pyx", line 2519, in sage.libs.gap.element.GapElement_Function.__call__ (build/cythonized/sage/libs/gap/element.c:19854)

a = [x if isinstance(x, GapElement) else libgap(x) for x in args]

File "sage/structure/parent.pyx", line 897, in sage.structure.parent.Parent.__call__ (build/cythonized/sage/structure/parent.c:9488)

return mor._call_(x)

File "sage/structure/coerce_maps.pyx", line 161, in sage.structure.coerce_maps.DefaultConvertMap_unique._call_ (build/cythonized/sage/structure/coerce_maps.c:4770)

raise

File "sage/structure/coerce_maps.pyx", line 156, in sage.structure.coerce_maps.DefaultConvertMap_unique._call_ (build/cythonized/sage/structure/coerce_maps.c:4662)

return C._element_constructor(x)

File "sage/libs/gap/libgap.pyx", line 317, in sage.libs.gap.libgap.Gap._element_constructor_ (build/cythonized/sage/libs/gap/libgap.c:3851)

x = str(x._libgap_init_())

AttributeError: 'PosixPath' object has no attribute '_libgap_init_'

**********************************************************************

2 items had failures:

1 of 3 in sage.groups.perm_gps.permgroup_named.PSL.ramification_module_decomposition_hurwitz_curve

1 of 3 in sage.groups.perm_gps.permgroup_named.PSL.ramification_module_decomposition_modular_curve

[513 tests, 2 failures, 2.34 s]

----------------------------------------------------------------------

sage -t --warn-long 41.4 --random-seed=318832280051652493374019680328048210704 src/sage/calculus/calculus.py # 1 doctest failed

sage -t --warn-long 41.4 --random-seed=318832280051652493374019680328048210704 src/sage/groups/perm_gps/permgroup_named.py # 2 doctests failed

Features to be detected: 4ti2,benzene,bliss,buckygen,conway_polynomials,csdp,database_cremona_ellcurve,database_cremona_mini_ellcurve,database_jones_numfield,database_knotinfo,dvipng,gfan,graphviz,imagemagick,jupymake,kenzo,latte_int,lrslib,mcqd,meataxe,msolve,nauty,palp,pandoc,pdf2svg,pdftocairo,phitigra,plantri,polytopes_db,polytopes_db_4d,pynormaliz,python_igraph,rubiks,sage.combinat,sage.geometry.polyhedron,sage.graphs,sage.groups,sage.plot,sage.rings.number_field,sage.rings.padics,sage.rings.real_double,sage.symbolic,sage_numerical_backends_coin,sagemath_doc_html,sphinx,tdlib

Doctesting 2 files using 24 threads.

sage -t --warn-long 41.4 --random-seed=318832280051652493374019680328048210704 src/sage/calculus/calculus.py

**********************************************************************

File "src/sage/calculus/calculus.py", line 387, in sage.calculus.calculus

Failed example:

integrate(exp(t)/(t + 1)^2, t, algorithm="giac")

Expected:

(t*Ei(t + 1) + Ei(t + 1) - e^(t + 1))/(t*e + e)

Got:

((t + 1)*(1/(t + 1) - 1)*Ei(-(t + 1)*(1/(t + 1) - 1) + 1) - Ei(-(t + 1)*(1/(t + 1) - 1) + 1) + e^(-(t + 1)*(1/(t + 1) - 1) + 1))/((t + 1)*(1/(t + 1) - 1)*e - e)

**********************************************************************

1 item had failures:

1 of 118 in sage.calculus.calculus

[463 tests, 1 failure, 6.98 s]

sage -t --warn-long 41.4 --random-seed=318832280051652493374019680328048210704 src/sage/groups/perm_gps/permgroup_named.py

**********************************************************************

File "src/sage/groups/perm_gps/permgroup_named.py", line 2737, in sage.groups.perm_gps.permgroup_named.PSL.ramification_module_decomposition_hurwitz_curve

Failed example:

G.ramification_module_decomposition_hurwitz_curve() # random, optional - gap_packages

Exception raised:

Traceback (most recent call last):

File "/home/travis/sage/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/doctest/forker.py", line 695, in _run

self.compile_and_execute(example, compiler, test.globs)

File "/home/travis/sage/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/doctest/forker.py", line 1093, in compile_and_execute

exec(compiled, globs)

File "<doctest sage.groups.perm_gps.permgroup_named.PSL.ramification_module_decomposition_hurwitz_curve[1]>", line 1, in <module>

G.ramification_module_decomposition_hurwitz_curve() # random, optional - gap_packages

File "/home/travis/sage/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/groups/perm_gps/permgroup_named.py", line 2758, in ramification_module_decomposition_hurwitz_curve

libgap.Read(Path(SAGE_EXTCODE) / 'gap' / 'joyner' /

File "sage/libs/gap/element.pyx", line 2519, in sage.libs.gap.element.GapElement_Function.__call__ (build/cythonized/sage/libs/gap/element.c:19854)

a = [x if isinstance(x, GapElement) else libgap(x) for x in args]

File "sage/structure/parent.pyx", line 897, in sage.structure.parent.Parent.__call__ (build/cythonized/sage/structure/parent.c:9488)

return mor._call_(x)

File "sage/structure/coerce_maps.pyx", line 161, in sage.structure.coerce_maps.DefaultConvertMap_unique._call_ (build/cythonized/sage/structure/coerce_maps.c:4770)

raise

File "sage/structure/coerce_maps.pyx", line 156, in sage.structure.coerce_maps.DefaultConvertMap_unique._call_ (build/cythonized/sage/structure/coerce_maps.c:4662)

return C._element_constructor(x)

File "sage/libs/gap/libgap.pyx", line 317, in sage.libs.gap.libgap.Gap._element_constructor_ (build/cythonized/sage/libs/gap/libgap.c:3851)

x = str(x._libgap_init_())

AttributeError: 'PosixPath' object has no attribute '_libgap_init_'

**********************************************************************

File "src/sage/groups/perm_gps/permgroup_named.py", line 2787, in sage.groups.perm_gps.permgroup_named.PSL.ramification_module_decomposition_modular_curve

Failed example:

G.ramification_module_decomposition_modular_curve() # random, optional - gap_packages

Exception raised:

Traceback (most recent call last):

File "/home/travis/sage/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/doctest/forker.py", line 695, in _run

self.compile_and_execute(example, compiler, test.globs)

File "/home/travis/sage/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/doctest/forker.py", line 1093, in compile_and_execute

exec(compiled, globs)

File "<doctest sage.groups.perm_gps.permgroup_named.PSL.ramification_module_decomposition_modular_curve[1]>", line 1, in <module>

G.ramification_module_decomposition_modular_curve() # random, optional - gap_packages

File "/home/travis/sage/local/var/lib/sage/venv-python3.10.3/lib/python3.10/site-packages/sage/groups/perm_gps/permgroup_named.py", line 2802, in ramification_module_decomposition_modular_curve

libgap.Read(Path(SAGE_EXTCODE) / 'gap' / 'joyner' /

File "sage/libs/gap/element.pyx", line 2519, in sage.libs.gap.element.GapElement_Function.__call__ (build/cythonized/sage/libs/gap/element.c:19854)

a = [x if isinstance(x, GapElement) else libgap(x) for x in args]

File "sage/structure/parent.pyx", line 897, in sage.structure.parent.Parent.__call__ (build/cythonized/sage/structure/parent.c:9488)

return mor._call_(x)

File "sage/structure/coerce_maps.pyx", line 161, in sage.structure.coerce_maps.DefaultConvertMap_unique._call_ (build/cythonized/sage/structure/coerce_maps.c:4770)

raise

File "sage/structure/coerce_maps.pyx", line 156, in sage.structure.coerce_maps.DefaultConvertMap_unique._call_ (build/cythonized/sage/structure/coerce_maps.c:4662)

return C._element_constructor(x)

File "sage/libs/gap/libgap.pyx", line 317, in sage.libs.gap.libgap.Gap._element_constructor_ (build/cythonized/sage/libs/gap/libgap.c:3851)

x = str(x._libgap_init_())

AttributeError: 'PosixPath' object has no attribute '_libgap_init_'

**********************************************************************

2 items had failures:

1 of 3 in sage.groups.perm_gps.permgroup_named.PSL.ramification_module_decomposition_hurwitz_curve

1 of 3 in sage.groups.perm_gps.permgroup_named.PSL.ramification_module_decomposition_modular_curve

[513 tests, 2 failures, 2.34 s]

----------------------------------------------------------------------

sage -t --warn-long 41.4 --random-seed=318832280051652493374019680328048210704 src/sage/calculus/calculus.py # 1 doctest failed

sage -t --warn-long 41.4 --random-seed=318832280051652493374019680328048210704 src/sage/groups/perm_gps/permgroup_named.py # 2 doctests failed

The calculus one appears that it is not simplifying for me (I get that answer after running simplify_full() on the result). The perm_gps one comes from the optional gap_packages.

Best,

Travis

Jun 20, 2022, 9:08:42 PMJun 20

to 'Justin C. Walker' via sage-release

I meant to follow up on that. The test has been added in a recent ticket but the result is different between giac 1.7 and giac 1.9. Both results are equivalent but the 1.7 is more compact (simplified?). The failure means you have giac 1.9 installed.

Jun 20, 2022, 9:13:36 PMJun 20

to 'Justin C. Walker' via sage-release

The test was introduced in https://trac.sagemath.org/ticket/25626 and you can see my comment at the end. We need to follow up to make sure the result is tested in a more version independent form.

Jun 20, 2022, 9:39:32 PMJun 20

to 'Justin C. Walker' via sage-release

Jun 21, 2022, 8:59:56 AMJun 21

to sage-release

This is on Apple Silicon Macs with Homebrew up to date, plus the tickets

#28263

#32340

#33213

#33619

#33840

#33854

#33974

#33978

#33979

#33984

#33985

#33987

#33990

#33991

#33992

#33993

#33996

#34001

#34007

#34008

#34009

#34010

#34014

#34019

#34021

#34022

#34025

#34030

#34034

#34035

#34036

#34037

#32340

#33213

#33619

#33840

#33854

#33974

#33978

#33979

#33984

#33985

#33987

#33990

#33991

#33992

#33993

#33996

#34001

#34007

#34008

#34009

#34010

#34014

#34019

#34021

#34022

#34025

#34030

#34034

#34035

#34036

#34037

(all of them positively reviewed) and make pytest and make ptestlong.

No problems on macOS 12.4 (Monterey) with Xcode 13.4.1.

On macOS 11.6.7 (Big Sur) with Xcode 13.2.1 make ptestlong gives the usual

----------------------------------------------------------------------

sage -t --long --warn-long 52.5 --random-seed=80197368135651905003905250340303052545 src/sage/matrix/matrix_gf2e_dense.pyx # 1 doctest failed

----------------------------------------------------------------------

----------------------------------------------------------------------

On Sun, 19 Jun 2022 at 17:39, Volker Braun <vbrau...@gmail.com> wrote:

Jun 23, 2022, 8:42:17 AMJun 23

to sage-release

On Ubuntu 18.04, I get

Git branch: develop

Git ref: 9.7.beta3

Running with SAGE_LOCAL='/home/slabbe/GitBox/sage/local' and SAGE_VENV='/home/slabbe/GitBox/sage/local/var/lib/sage/venv-python3.10.3'

Using --optional=build,debian,external,pip,sage,sage_spkg

Features to be detected: 4ti2,benzene,bliss,buckygen,conway_polynomials,cplex,csdp,database_cremona_ellcurve,database_cremona_mini_ellcurve,database_jones_numfield,database_knotinfo,dvipng,ffmpeg,gfan,graphviz,gurobi,imagemagick,internet,jupymake,kenzo,latex,latex_package_tkz_graph,latte_int,lrslib,lualatex,macaulay2,magma,maple,mathematica,matlab,mcqd,meataxe,msolve,nauty,octave,palp,pandoc,pdf2svg,pdflatex,pdftocairo,phitigra,plantri,polytopes_db,polytopes_db_4d,pynormaliz,python_igraph,rubiks,sage.combinat,sage.geometry.polyhedron,sage.graphs,sage.groups,sage.plot,sage.rings.number_field,sage.rings.padics,sage.rings.real_double,sage.symbolic,sage_numerical_backends_coin,sagemath_doc_html,scilab,sphinx,tdlib,xelatex

[...]

----------------------------------------------------------------------

sage -t --long --random-seed=318445589992254347490400084771415258661 src/sage/tests/cmdline.py # 1 doctest failed

sage -t --long --random-seed=318445589992254347490400084771415258661 src/sage/interfaces/expect.py # 2 doctests failed

sage -t --long --random-seed=318445589992254347490400084771415258661 src/sage/modular/overconvergent/hecke_series.py # Timed out

----------------------------------------------------------------------

Features detected for doctesting: dvipng,ffmpeg,gfan,graphviz,imagemagick,internet,latex,latex_package_tkz_graph,lualatex,nauty,octave,palp,pandoc,pdf2svg,pdflatex,pdftocairo,sage.combinat,sage.geometry.polyhedron,sage.graphs,sage.groups,sage.plot,sage.rings.number_field,sage.rings.padics,sage.rings.real_double,sage.symbolic,sagemath_doc_html,sphinx,xelatex

Running failed tests again, I get:

----------------------------------------------------------------------

sage -t --long --random-seed=186459753638648857576217773064220380389 src/sage/tests/cmdline.py # 1 doctest failed

sage -t --long --random-seed=186459753638648857576217773064220380389 src/sage/modular/overconvergent/hecke_series.py # Timed out

----------------------------------------------------------------------

Features detected for doctesting: internet,pandoc

Git ref: 9.7.beta3

Running with SAGE_LOCAL='/home/slabbe/GitBox/sage/local' and SAGE_VENV='/home/slabbe/GitBox/sage/local/var/lib/sage/venv-python3.10.3'

Using --optional=build,debian,external,pip,sage,sage_spkg

Features to be detected: 4ti2,benzene,bliss,buckygen,conway_polynomials,cplex,csdp,database_cremona_ellcurve,database_cremona_mini_ellcurve,database_jones_numfield,database_knotinfo,dvipng,ffmpeg,gfan,graphviz,gurobi,imagemagick,internet,jupymake,kenzo,latex,latex_package_tkz_graph,latte_int,lrslib,lualatex,macaulay2,magma,maple,mathematica,matlab,mcqd,meataxe,msolve,nauty,octave,palp,pandoc,pdf2svg,pdflatex,pdftocairo,phitigra,plantri,polytopes_db,polytopes_db_4d,pynormaliz,python_igraph,rubiks,sage.combinat,sage.geometry.polyhedron,sage.graphs,sage.groups,sage.plot,sage.rings.number_field,sage.rings.padics,sage.rings.real_double,sage.symbolic,sage_numerical_backends_coin,sagemath_doc_html,scilab,sphinx,tdlib,xelatex

[...]

----------------------------------------------------------------------

sage -t --long --random-seed=318445589992254347490400084771415258661 src/sage/tests/cmdline.py # 1 doctest failed

sage -t --long --random-seed=318445589992254347490400084771415258661 src/sage/interfaces/expect.py # 2 doctests failed

sage -t --long --random-seed=318445589992254347490400084771415258661 src/sage/modular/overconvergent/hecke_series.py # Timed out

----------------------------------------------------------------------

Features detected for doctesting: dvipng,ffmpeg,gfan,graphviz,imagemagick,internet,latex,latex_package_tkz_graph,lualatex,nauty,octave,palp,pandoc,pdf2svg,pdflatex,pdftocairo,sage.combinat,sage.geometry.polyhedron,sage.graphs,sage.groups,sage.plot,sage.rings.number_field,sage.rings.padics,sage.rings.real_double,sage.symbolic,sagemath_doc_html,sphinx,xelatex

Running failed tests again, I get:

----------------------------------------------------------------------

sage -t --long --random-seed=186459753638648857576217773064220380389 src/sage/tests/cmdline.py # 1 doctest failed

sage -t --long --random-seed=186459753638648857576217773064220380389 src/sage/modular/overconvergent/hecke_series.py # Timed out

----------------------------------------------------------------------

Features detected for doctesting: internet,pandoc

The issue with cmdline.py is the same as before : https://trac.sagemath.org/ticket/25536

I don't know where are the other usual failures gone? Maybe this is because I restarted my git tree from scratch this morning after reviewing https://trac.sagemath.org/ticket/33409 when I realised that make micro_release also erases the .git folder.

Jun 24, 2022, 4:50:32 AMJun 24

to sage-release

Is anyone else seeing docbuilding issues? I am getting

[sagemath_doc_html-none] __import__(module_name)

[sagemath_doc_html-none] ModuleNotFoundError: No module named 'sage.combinat.nu_dyck_word'

[sagemath_doc_html-none] ModuleNotFoundError: No module named 'sage.combinat.nu_dyck_word'

which is resulting the doc not building for me via "make". I have also run "make doc-clean" and tried again with the same result. I think I have also seen this on some patchbots.

Best,

Travis

Jun 24, 2022, 5:04:05 AMJun 24

to sage-r...@googlegroups.com

The doc builds properly for me on macOS 12.3.1

David.

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Jun 24, 2022, 5:05:31 AMJun 24

to sage-release

Is anyone else seeing docbuilding issues? I am getting[sagemath_doc_html-none] __import__(module_name)

[sagemath_doc_html-none] ModuleNotFoundError: No module named 'sage.combinat.nu_dyck_word'which is resulting the doc not building for me via "make". I have also run "make doc-clean" and tried again with the same result. I think I have also seen this on some patchbots.

This might be because my docbuild seems to be stuck in some partial (broken) state as I have messages like

[sagemath_doc_html-none] [finite_ri] updating environment: 0 added, 0 changed, 19 removed

The fact that it thinks file have been removed is slightly troubling to me to what is supposed to be "clean" from the docbuild perspective. Have I missed something with our docbuilding procedures? Is there some way to fix this without a full "make clean" and rebuild? This was from an incremental upgrade.

Best,

Travis

Travis

Jun 24, 2022, 6:21:39 AMJun 24

to sage-release

Chances are that "make clean" (or even distclean) might be necessary.

>

> Best,

> Travis

>

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Jun 24, 2022, 12:19:40 PMJun 24

to sage-release

Try "make doc-clean doc-uninstall", not just "make doc-clean".

Jun 26, 2022, 10:59:04 PMJun 26

to sage-release

Try "make doc-clean doc-uninstall", not just "make doc-clean".

Unfortunately that doesn't work for me with the same error (but now it at least it is trying to add the modules). I might have to follow Dima's suggestion and do "make clean" and maybe also reinstall the optional packages with a distclean...

Best,

Travis

Jun 30, 2022, 10:50:12 AMJun 30

to sage-release

FWIW, ditto on a slightly smaller machine (Debia testing running on core i5 + 8 GB RAM).

HTH,

Jul 3, 2022, 11:51:12 AMJul 3

to sage-release

While `ptest`

ing an upcoming ticket (irrelevant here), I got two new permanent errors. The first one is Trac#34029, whose ix is `positively_reviewed`

. The second one is new, as far as I can tell :

```
charpent@zen-book-flip:/usr/local/sage-9$ sage -t --long --warn-long 205.0 --random-seed=17841348431377877665902196027003710887 src/sage/libs/eclib/mwrank.pyx # 1 doctest failed
Running doctests with ID 2022-07-03-17-36-25-d75ea5b2.
Git branch: develop
Git ref: 9.7.beta3
Running with SAGE_LOCAL='/usr/local/sage-9/local' and SAGE_VENV='/usr/local/sage-9/local/var/lib/sage/venv-python3.10'
Using --optional=debian,dot2tex,fricas,gap_packages,libsemigroups,mathics,mathics_scanner,palettable,pint,pip,pysingular,sage,sage_spkg
Features to be detected: 4ti2,benzene,bliss,buckygen,conway_polynomials,csdp,database_cremona_ellcurve,database_cremona_mini_ellcurve,database_jones_numfield,database_knotinfo,dvipng,gfan,graphviz,imagemagick,jupymake,kenzo,latte_int,lrslib,mcqd,meataxe,msolve,nauty,palp,pandoc,pdf2svg,pdftocairo,phitigra,plantri,polytopes_db,polytopes_db_4d,pynormaliz,python_igraph,rubiks,sage.combinat,sage.geometry.polyhedron,sage.graphs,sage.groups,sage.plot,sage.rings.number_field,sage.rings.padics,sage.rings.real_double,sage.symbolic,sage_numerical_backends_coin,sagemath_doc_html,sphinx,tdlib
Doctesting 1 file.
sage -t --long --warn-long 205.0 --random-seed=17841348431377877665902196027003710887 src/sage/libs/eclib/mwrank.pyx
**********************************************************************
File "src/sage/libs/eclib/mwrank.pyx", line 589, in sage.libs.eclib.mwrank._mw.__init__
Failed example:
EQ.search(1)
Expected:
P1 = [0:1:0] is torsion point, order 1
P1 = [-3:0:1] is generator number 1
saturating up to 20...Saturation index bound (for points of good reduction) = 3
Reducing saturation bound from given value 20 to computed index bound 3
Checking saturation at [ 2 3 ]
Checking 2-saturation
Points were proved 2-saturated (max q used = 7)
Checking 3-saturation
Points were proved 3-saturated (max q used = 7)
done
P2 = [-2:3:1] is generator number 2
saturating up to 20...Saturation index bound (for points of good reduction) = 4
Reducing saturation bound from given value 20 to computed index bound 4
Checking saturation at [ 2 3 ]
Checking 2-saturation
possible kernel vector = [1,1]
This point may be in 2E(Q): [14:-52:1]
...and it is!
Replacing old generator #1 with new generator [1:-1:1]
Reducing index bound from 4 to 2
Points have successfully been 2-saturated (max q used = 7)
Index gain = 2^1
done, index = 2.
Gained index 2, new generators = [ [1:-1:1] [-2:3:1] ]
P3 = [-14:25:8] is generator number 3
saturating up to 20...Saturation index bound (for points of good reduction) = 3
Reducing saturation bound from given value 20 to computed index bound 3
Checking saturation at [ 2 3 ]
Checking 2-saturation
Points were proved 2-saturated (max q used = 11)
Checking 3-saturation
Points were proved 3-saturated (max q used = 13)
done, index = 1.
P4 = [-1:3:1] = -1*P1 + -1*P2 + -1*P3 (mod torsion)
P4 = [0:2:1] = 2*P1 + 0*P2 + 1*P3 (mod torsion)
P4 = [2:13:8] = -3*P1 + 1*P2 + -1*P3 (mod torsion)
P4 = [1:0:1] = -1*P1 + 0*P2 + 0*P3 (mod torsion)
P4 = [2:0:1] = -1*P1 + 1*P2 + 0*P3 (mod torsion)
P4 = [18:7:8] = -2*P1 + -1*P2 + -1*P3 (mod torsion)
P4 = [3:3:1] = 1*P1 + 0*P2 + 1*P3 (mod torsion)
P4 = [4:6:1] = 0*P1 + -1*P2 + -1*P3 (mod torsion)
P4 = [36:69:64] = 1*P1 + -2*P2 + 0*P3 (mod torsion)
P4 = [68:-25:64] = -2*P1 + -1*P2 + -2*P3 (mod torsion)
P4 = [12:35:27] = 1*P1 + -1*P2 + -1*P3 (mod torsion)
Got:
P1 = [0:1:0] is torsion point, order 1
P1 = [-3:0:1] is generator number 1
saturating up to 20...Saturation index bound (for points of good reduction) = 3
Reducing saturation bound from given value 20 to computed index bound 3
Tamagawa index primes are [ 2 ]
Checking saturation at [ 2 3 ]
Checking 2-saturation
Points were proved 2-saturated (max q used = 7)
Checking 3-saturation
Points were proved 3-saturated (max q used = 7)
done
P2 = [-2:3:1] is generator number 2
saturating up to 20...Saturation index bound (for points of good reduction) = 4
Reducing saturation bound from given value 20 to computed index bound 4
Tamagawa index primes are [ 2 ]
Checking saturation at [ 2 3 ]
Checking 2-saturation
possible kernel vector = [1,1]
This point may be in 2E(Q): [14:-52:1]
...and it is!
Replacing old generator #1 with new generator [1:-1:1]
Reducing index bound from 4 to 2
Points have successfully been 2-saturated (max q used = 7)
Index gain = 2^1
done, index = 2.
Gained index 2, new generators = [ [1:-1:1] [-2:3:1] ]
P3 = [-14:25:8] is generator number 3
saturating up to 20...Saturation index bound (for points of good reduction) = 3
Reducing saturation bound from given value 20 to computed index bound 3
Tamagawa index primes are [ 2 ]
Checking saturation at [ 2 3 ]
Checking 2-saturation
Points were proved 2-saturated (max q used = 11)
Checking 3-saturation
Points were proved 3-saturated (max q used = 13)
done, index = 1.
P4 = [-1:3:1] = -1*P1 + -1*P2 + -1*P3 (mod torsion)
P4 = [0:2:1] = 2*P1 + 0*P2 + 1*P3 (mod torsion)
P4 = [2:13:8] = -3*P1 + 1*P2 + -1*P3 (mod torsion)
P4 = [1:0:1] = -1*P1 + 0*P2 + 0*P3 (mod torsion)
P4 = [2:0:1] = -1*P1 + 1*P2 + 0*P3 (mod torsion)
P4 = [18:7:8] = -2*P1 + -1*P2 + -1*P3 (mod torsion)
P4 = [3:3:1] = 1*P1 + 0*P2 + 1*P3 (mod torsion)
P4 = [4:6:1] = 0*P1 + -1*P2 + -1*P3 (mod torsion)
P4 = [36:69:64] = 1*P1 + -2*P2 + 0*P3 (mod torsion)
P4 = [68:-25:64] = -2*P1 + -1*P2 + -2*P3 (mod torsion)
P4 = [12:35:27] = 1*P1 + -1*P2 + -1*P3 (mod torsion)
**********************************************************************
1 item had failures:
1 of 26 in sage.libs.eclib.mwrank._mw.__init__
[210 tests, 1 failure, 23.20 s]
----------------------------------------------------------------------
sage -t --long --warn-long 205.0 --random-seed=17841348431377877665902196027003710887 src/sage/libs/eclib/mwrank.pyx # 1 doctest failed
----------------------------------------------------------------------
Total time for all tests: 23.3 seconds
cpu time: 23.2 seconds
cumulative wall time: 23.2 seconds
Features detected for doctesting:
pytest is not installed in the venv, skip checking tests that rely on it
```

checking out `develop`

, I reproduced the same problems. These failures are therefore new `develop`

problems (possibly due to Debian testing evolution) rather than specific to my ticket.

Advice asked on whether and how to file the problem I believe unreported.

HTH,

Le mardi 21 juin 2022 à 13:21:24 UTC+2, Emmanuel Charpentier a écrit :

Jul 3, 2022, 2:22:36 PMJul 3

to sage-r...@googlegroups.com

It looks to me as if this is caused by the recent eclib upgrade.

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Jul 5, 2022, 3:24:43 PMJul 5

to sage-r...@googlegroups.com

On my mac OS 12.4 and Xcode 13.4.1 with homebrew, the first build failed with the next message:

make[4]: *** [cvxopt-SAGE_VENV-no-deps] Error 1

make[3]: *** [/Users/iohara/Desktop/sage-9.7.beta3/local/var/lib/sage/venv-python3.10/var/lib/sage/installed/cvxopt-1.2.7] Error 2

make[3]: Target `all-sage' not remade because of errors.

make[2]: *** [all-start] Error 2

real 1m10.169s

user 0m57.233s

sys 0m11.077s

***************************************************************

Error building Sage.

The following package(s) may have failed to build (not necessarily

during this run of 'make all-start'):

* package: gmpy2-2.1.1

last build time: Jul 5 21:16

log file: /Users/iohara/Desktop/sage-9.7.beta3/logs/pkgs/gmpy2-2.1.1.log

* package: cysignals-1.11.2

last build time: Jul 5 21:16

log file: /Users/iohara/Desktop/sage-9.7.beta3/logs/pkgs/cysignals-1.11.2.log

* package: matplotlib-3.5.1

last build time: Jul 5 21:17

log file: /Users/iohara/Desktop/sage-9.7.beta3/logs/pkgs/matplotlib-3.5.1.log

* package: cvxopt-1.2.7

last build time: Jul 5 21:17

log file: /Users/iohara/Desktop/sage-9.7.beta3/logs/pkgs/cvxopt-1.2.7.log

Notice that I could compile from the first build with Xcode 13.3. Do you have any idea ?

Kenji

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