Sage 10.3 released

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Volker Braun

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Mar 19, 2024, 8:36:30 PMMar 19
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The "master" git branch has been updated to Sage-10.3. As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html

There was no change over 10.3.rc4

Matthias Köppe

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Mar 20, 2024, 1:03:54 AMMar 20
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Thanks a lot, Volker!

Many thanks to all who contributed to this release, and welcome to all new contributors!

It's not too late to expand our release notes: https://github.com/sagemath/sage/wiki/Sage-10.3-Release-Tour

John Cremona

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Mar 20, 2024, 5:53:46 AMMar 20
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Thanks for the new release.  On a ubuntu machine which I had literally only hust upgraded from 20.04 LTS to 22.04.LTS, by build failed here:
* package:         info-6.8
  last build time: Mar 20 09:39
  log file:        /usr/local/sage/sage-10.3/logs/pkgs/info-6.8.log
  build directory: /usr/local/sage/sage-10.3/local/var/tmp/sage/build/info-6.8

I could not tell from the log (attached) just what the problem is -- any suggestions?

John

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info-6.8.log

Dima Pasechnik

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Mar 20, 2024, 6:13:54 AMMar 20
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On Wed, Mar 20, 2024 at 9:53 AM John Cremona <john.c...@gmail.com> wrote:
Thanks for the new release.  On a ubuntu machine which I had literally only hust upgraded from 20.04 LTS to 22.04.LTS, by build failed here:
* package:         info-6.8
  last build time: Mar 20 09:39
  log file:        /usr/local/sage/sage-10.3/logs/pkgs/info-6.8.log
  build directory: /usr/local/sage/sage-10.3/local/var/tmp/sage/build/info-6.8

I could not tell from the log (attached) just what the problem is -- any suggestions?

Just install texinfo - then this package should not be needed. Building (tex)info is tricky, as you see here...

(IMHO this should have never been made a standard Sage package - but rather Sage should require info from the OS, as it's literally available in every sane environment)

Dima
 

John

On Wed, 20 Mar 2024 at 05:03, Matthias Köppe <matthia...@gmail.com> wrote:
Thanks a lot, Volker!

Many thanks to all who contributed to this release, and welcome to all new contributors!

It's not too late to expand our release notes: https://github.com/sagemath/sage/wiki/Sage-10.3-Release-Tour

On Tuesday, March 19, 2024 at 5:36:30 PM UTC-7 Volker Braun wrote:
The "master" git branch has been updated to Sage-10.3. As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html

There was no change over 10.3.rc4

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John Cremona

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Mar 20, 2024, 7:23:01 AMMar 20
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On Wed, 20 Mar 2024 at 10:13, Dima Pasechnik <dim...@gmail.com> wrote:


On Wed, Mar 20, 2024 at 9:53 AM John Cremona <john.c...@gmail.com> wrote:
Thanks for the new release.  On a ubuntu machine which I had literally only hust upgraded from 20.04 LTS to 22.04.LTS, by build failed here:
* package:         info-6.8
  last build time: Mar 20 09:39
  log file:        /usr/local/sage/sage-10.3/logs/pkgs/info-6.8.log
  build directory: /usr/local/sage/sage-10.3/local/var/tmp/sage/build/info-6.8

I could not tell from the log (attached) just what the problem is -- any suggestions?

Just install texinfo - then this package should not be needed. Building (tex)info is tricky, as you see here...

Thanks Dima, you are very helpful as always.  I installed texinfo, forgot to rerun ./configure, reran make, stuck at the same place, remebered to rerun ./configure, and am continuing the build.  Luckily this machine has 72 cores and since I only just did the system upgrade, no-one else is using it!

I don't always install all the packages suggested by ./configure since sometimes I have more recent versions than are in ubuntu.  But that is not relevant for texinfo (it can be for pari, flint, ntl, and of course eclib).

John



(IMHO this should have never been made a standard Sage package - but rather Sage should require info from the OS, as it's literally available in every sane environment)

Dima
 

John

On Wed, 20 Mar 2024 at 05:03, Matthias Köppe <matthia...@gmail.com> wrote:
Thanks a lot, Volker!

Many thanks to all who contributed to this release, and welcome to all new contributors!

It's not too late to expand our release notes: https://github.com/sagemath/sage/wiki/Sage-10.3-Release-Tour

On Tuesday, March 19, 2024 at 5:36:30 PM UTC-7 Volker Braun wrote:
The "master" git branch has been updated to Sage-10.3. As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html

There was no change over 10.3.rc4

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Dima Pasechnik

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Mar 20, 2024, 7:52:44 AMMar 20
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To explain the error you were getting, your log has

configure: WARNING: Could not find a terminal library among tinfo ncurses curses termlib termcap terminfo

which explains the linking error you get at the end.
I think info (texinfo) should just become a pre-req for all the systems we support (just as well as g++ and gfortran, by the way),
and not something one might get into building from source for the only reason that it's not installed, and get stuck.
There is 0 value digging out more details on this and adjusting build scripts accordingly, possibly (re)introducting curses or another
equally cursed package into Sage deps.

A recent fight over these issues happened on
https://github.com/sagemath/sage/pull/36726 (and I was shouted down - as the enemy had the numbers on that occasion)

But I am ready for a re-match...

Dima

John Cremona

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Mar 20, 2024, 7:54:20 AMMar 20
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Sorry but I have another issue, different machine, also ubuntu 20.04:

The following package(s) may have failed to build (not necessarily
during this run of 'make all-start'):

* package:         cypari-2.1.4
  last build time: Mar 20 11:41
  log file:        /usr/local/sage/sage-10.3/logs/pkgs/cypari-2.1.4.log

Log attached.

If it is relevant, I do have a recent pari installed and configure decided it was suitable.

John
cypari-2.1.4.log

dim...@gmail.com

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Mar 20, 2024, 8:08:31 AMMar 20
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On Wed, Mar 20, 2024 at 11:53:49AM +0000, John Cremona wrote:
> Sorry but I have another issue, different machine, also ubuntu 20.04:
>
> The following package(s) may have failed to build (not necessarily
> during this run of 'make all-start'):
>
> * package: cypari-2.1.4
> last build time: Mar 20 11:41
> log file: /usr/local/sage/sage-10.3/logs/pkgs/cypari-2.1.4.log
>
> Log attached.
>
> If it is relevant, I do have a recent pari installed and configure decided
> it was suitable.

the error is

File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/cypari-2.1.4/src/autogen/doc.py", line 274, in get_raw_doc
raise RuntimeError("no help found for '{}'".format(function))
RuntimeError: no help found for 'besseljzero'
error: subprocess-exited-with-error

which indicates that your pari help data (used by cypari2) was not installed in a location
understood by cypari2, or not installed at all.

I recall seeing this sort of error on a Linux and concluding that it's a
bug in the Pari package of that Linux distro.
Does your Pari help system work there?
> >>>> <https://groups.google.com/d/msgid/sage-release/dddbd588-b3fe-464d-8fb8-359fb5e2b33fn%40googlegroups.com?utm_medium=email&utm_source=footer>
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> Attempting to download package cypari2-2.1.4.tar.gz from mirrors
> https://github.com/sagemath/sage/releases/download/10.3/cypari2-2.1.4.tar.gz
> [......................................................................]
> cypari-2.1.4
> ====================================================
> Setting up build directory for cypari-2.1.4
> Finished extraction
> Applying patches from ../patches...
> Applying ../patches/trashcan.patch
> patching file cypari2/gen.pxd
> patching file cypari2/gen.pyx
> Hunk #1 succeeded at 144 with fuzz 1 (offset 9 lines).
> patching file cypari2/pari_instance.pyx
> ****************************************************
> Host system:
> Linux john-Latitude-E5470 5.15.0-97-generic #107-Ubuntu SMP Wed Feb 7 13:26:48 UTC 2024 x86_64 x86_64 x86_64 GNU/Linux
> ****************************************************
> C compiler: gcc
> C compiler version:
> Using built-in specs.
> COLLECT_GCC=/usr/bin/gcc
> COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/11/lto-wrapper
> OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
> OFFLOAD_TARGET_DEFAULT=1
> Target: x86_64-linux-gnu
> Configured with: ../src/configure -v --with-pkgversion='Ubuntu 11.4.0-1ubuntu1~22.04' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-11-XeT9lY/gcc-11-11.4.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-XeT9lY/gcc-11-11.4.0/debian/tmp-gcn/usr --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=2
> Thread model: posix
> Supported LTO compression algorithms: zlib zstd
> gcc version 11.4.0 (Ubuntu 11.4.0-1ubuntu1~22.04)
> ****************************************************
> Package 'cypari' is currently not installed
> No legacy uninstaller found for 'cypari'; nothing to do
> Installing cypari-2.1.4
> Looking in links: /usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/lib/sage/wheels
> Processing /usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/cypari-2.1.4/src
> Installing build dependencies: started
> Running command pip subprocess to install build dependencies
> Looking in links: /usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/lib/sage/wheels
> Processing /usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/lib/sage/wheels/setuptools-69.0.2-py3-none-any.whl
> Processing /usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/lib/sage/wheels/Cython-3.0.7-cp310-cp310-linux_x86_64.whl
> Processing /usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/lib/sage/wheels/cysignals-1.11.4-cp310-cp310-linux_x86_64.whl
> Installing collected packages: cysignals, setuptools, Cython
> Successfully installed Cython-3.0.7 cysignals-1.11.4 setuptools-69.0.2
> Installing build dependencies: finished with status 'done'
> Getting requirements to build wheel: started
> Running command Getting requirements to build wheel
> running egg_info
> writing cypari2.egg-info/PKG-INFO
> writing dependency_links to cypari2.egg-info/dependency_links.txt
> writing requirements to cypari2.egg-info/requires.txt
> writing top-level names to cypari2.egg-info/top_level.txt
> Generating PARI functions: (!_) (#_) (%) (%#) (+_) (-_) Catalan Col Colrev (DEBUGLEVEL) Euler I List Map Mat Mod (O) (O(_^_)) Pi Pol Polrev Qfb Ser Set Str Strchr Strexpand Strprintf Strtex Vec Vecrev Vecsmall ([_.._]) ([_|_<-_,_;_]) ([_|_<-_,_]) (_!) (_!=_) (_#) (_%=_) (_%_) (_&&_) (_') (_'_) (_(_)) (_*=_) (_*_) (_++) (_+=_) (_+_) (_--) (_-=_) (_-_) (_.a1) (_.a2) (_.a3) (_.a4) (_.a6) (_.area) (_.b2) (_.b4) (_.b6) (_.b8) (_.bid) (_.bnf) (_.c4) (_.c6) (_.clgp) (_.codiff) (_.cyc) (_.diff) (_.disc) (_.e) (_.eta) (_.f) (_.fu) (_.gen) (_.group) (_.index) (_.j) (_.mod) (_.nf) (_.no) (_.normfu) (_.omega) (_.orders) (_.p) (_.pol) (_.polabs) (_.r1) (_.r2) (_.reg) (_.roots) (_.sign) (_.t2) (_.tate) (_.tu) (_.zk) (_.zkst) (_/=_) (_/_) (_<<=_) (_<<_) (_<=_) (_<_) (_===_) (_==_) (_>=_) (_>>=_) (_>>_) (_>_) (_F2xq_log_Coppersmith_worker) (_Flxq_log_Coppersmith_worker) (_FpM_ratlift_worker) (_Fp_log_sieve_worker) (_QM_charpoly_ZX_worker) (_QXQ_div_worker) (_QXQ_inv_worker) (_RgM_ZM_mul_worker) (_ZM_det_worker) (_ZM_gauss_worker) (_ZM_inv_worker) (_ZM_ker_worker) (_ZM_mul_worker) (_ZXQX_composedsum_worker) (_ZXQX_resultant_worker) (_ZXQ_minpoly_worker) (_ZX_ZXY_resultant_worker) (_ZX_composedsum_worker) (_ZX_gcd_worker) (_ZX_resultant_worker) (_ZabM_inv_worker) (_[_,]) (_[_,_]) (_[_.._,_.._]) (_[_.._]) (_\/=_) (_\/_) (_\=_) (_\_) (_^_) (_^s) (__) (_aprcl_step4_worker) (_aprcl_step6_worker) (_avma) (_badtype) (_cast) (_cgetg) (_chinese_unit_worker) (_const_expr) (_const_quote) (_const_real) (_const_smallreal) (_decl_base) (_decl_ext) (_def_TeXstyle) (_def_breakloop) (_def_colors) (_def_compatible) (_def_datadir) (_def_debug) (_def_debugfiles) (_def_debugmem) (_def_echo) (_def_factor_add_primes) (_def_factor_proven) (_def_format) (_def_graphcolormap) (_def_graphcolors) (_def_help) (_def_histfile) (_def_histsize) (_def_lines) (_def_linewrap) (_def_log) (_def_logfile) (_def_nbthreads) (_def_new_galois_format) (_def_output) (_def_parisize) (_def_parisizemax) (_def_path) (_def_plothsizes) (_def_prettyprinter) (_def_primelimit) (_def_prompt) (_def_prompt_cont) (_def_psfile) (_def_readline) (_def_realbitprecision) (_def_realprecision) (_def_recover) (_def_secure) (_def_seriesprecision) (_def_simplify) (_def_sopath) 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(_header_modular_symbols) (_header_number_fields) (_header_number_theoretical) (_header_operators) (_header_polynomials) (_header_programming/control) (_header_programming/parallel) (_header_programming/specific) (_header_sums) (_header_transcendental) (_iferr_CATCH) (_iferr_CATCH_reset) (_iferr_ENDCATCH) (_iferr_error) (_iferr_rethrow) (_inv) (_lerch_worker) (_lfuninit_theta2_worker) (_lfuninit_worker) (_low_stack_lim) (_maxprime) (_multi_if) (_ndec2nbits) (_ndec2prec) (_nflist_A462_worker) (_nflist_A46S46P_worker) (_nflist_A4S4_worker) (_nflist_C32C4_worker) (_nflist_C32D4_worker) (_nflist_C3C3_worker) (_nflist_C3_worker) (_nflist_C4vec_worker) (_nflist_C5_worker) (_nflist_C6_worker) (_nflist_C9_worker) (_nflist_CL_worker) (_nflist_D4_worker) (_nflist_D612_worker) (_nflist_D9_worker) (_nflist_DL_worker) (_nflist_Mgen_worker) (_nflist_S32_worker) (_nflist_S36_worker) (_nflist_S3C3_worker) (_nflist_S3I_worker) (_nflist_S3R_worker) (_nflist_S462_worker) (_nflist_S46M_worker) (_nflist_V4_worker) (_norange) (_nxMV_polint_worker) (_parapply_slice_worker) (_pareval_worker) (_parfor_init) (_parfor_next) (_parfor_stop) (_parfor_worker) (_parforeach_init) (_parforeach_next) (_parforeach_stop) (_parforprime_init) (_parforprime_next) (_parforprime_stop) (_parforprimestep_init) (_parforstep_init) (_parforstep_next) (_parforstep_stop) (_parforvec_init) (_parforvec_next) (_parforvec_stop) (_parsum_slice_worker) (_partmap_reverse_frac_worker) (_parvector_worker) (_polclass_worker) (_polint_worker) (_polmodular_worker) (_primecertisvalid_ecpp_worker) (_proto_code) (_proto_max_args) (_proto_ret) (_ramanujantau_worker) (_safecoeff) (_stack_lim) (_strtoclosure) (_taugen_n_worker) (_tovec) (_tovecprec) (_type_preorder) (_typedef) (_u_forprime_init) (_u_forprime_next) (_void_if) (_wrap_G) (_wrap_GG) (_wrap_Gp) (_wrap_bG) (_wrap_vG) (_||_) (_~) abs acos acosh addhelp addprimes agm airy alarm algadd algalgtobasis algaut algb algbasis algbasistoalg algcenter algcentralproj algchar algcharpoly algdegree algdep algdim algdisc algdivl algdivr alggroup alggroupcenter alghasse alghassef alghassei algindex alginit alginv alginvbasis algisassociative algiscommutative algisdivision algisdivl algisinv algisramified algissemisimple algissimple algissplit alglatadd alglatcontains alglatelement alglathnf alglatindex alglatinter alglatlefttransporter alglatmul alglatrighttransporter alglatsubset algmakeintegral algmul algmultable algneg algnorm algpoleval algpow algprimesubalg algquotient algradical algramifiedplaces algrandom algrelmultable algsimpledec algsplit algsplittingdata algsplittingfield algsqr algsub algsubalg algtableinit algtensor algtomatrix algtrace algtype (alias) (allocatemem) apply arg arity asin asinh asympnum asympnumraw atan atanh bernfrac bernpol bernreal bernvec besselh1 besselh2 besseli besselj besseljh besseljzeroTraceback (most recent call last):
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
> main()
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
> json_out['return_val'] = hook(**hook_input['kwargs'])
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 118, in get_requires_for_build_wheel
> return hook(config_settings)
> File "/tmp/pip-build-env-lyl67bjl/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 325, in get_requires_for_build_wheel
> return self._get_build_requires(config_settings, requirements=['wheel'])
> File "/tmp/pip-build-env-lyl67bjl/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 295, in _get_build_requires
> self.run_setup()
> File "/tmp/pip-build-env-lyl67bjl/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 311, in run_setup
> exec(code, locals())
> File "<string>", line 68, in <module>
> File "/tmp/pip-build-env-lyl67bjl/overlay/lib/python3.10/site-packages/setuptools/__init__.py", line 103, in setup
> return distutils.core.setup(**attrs)
> File "/tmp/pip-build-env-lyl67bjl/overlay/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 185, in setup
> return run_commands(dist)
> File "/tmp/pip-build-env-lyl67bjl/overlay/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
> dist.run_commands()
> File "/tmp/pip-build-env-lyl67bjl/overlay/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands
> self.run_command(cmd)
> File "/tmp/pip-build-env-lyl67bjl/overlay/lib/python3.10/site-packages/setuptools/dist.py", line 963, in run_command
> super().run_command(command)
> File "/tmp/pip-build-env-lyl67bjl/overlay/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
> cmd_obj.run()
> File "/tmp/pip-build-env-lyl67bjl/overlay/lib/python3.10/site-packages/setuptools/command/egg_info.py", line 321, in run
> self.find_sources()
> File "/tmp/pip-build-env-lyl67bjl/overlay/lib/python3.10/site-packages/setuptools/command/egg_info.py", line 329, in find_sources
> mm.run()
> File "/tmp/pip-build-env-lyl67bjl/overlay/lib/python3.10/site-packages/setuptools/command/egg_info.py", line 551, in run
> self.add_defaults()
> File "/tmp/pip-build-env-lyl67bjl/overlay/lib/python3.10/site-packages/setuptools/command/egg_info.py", line 589, in add_defaults
> sdist.add_defaults(self)
> File "/tmp/pip-build-env-lyl67bjl/overlay/lib/python3.10/site-packages/setuptools/command/sdist.py", line 112, in add_defaults
> super().add_defaults()
> File "/tmp/pip-build-env-lyl67bjl/overlay/lib/python3.10/site-packages/setuptools/_distutils/command/sdist.py", line 251, in add_defaults
> self._add_defaults_ext()
> File "/tmp/pip-build-env-lyl67bjl/overlay/lib/python3.10/site-packages/setuptools/_distutils/command/sdist.py", line 335, in _add_defaults_ext
> build_ext = self.get_finalized_command('build_ext')
> File "/tmp/pip-build-env-lyl67bjl/overlay/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 305, in get_finalized_command
> cmd_obj.ensure_finalized()
> File "/tmp/pip-build-env-lyl67bjl/overlay/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 111, in ensure_finalized
> self.finalize_options()
> File "<string>", line 32, in finalize_options
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/cypari-2.1.4/src/autogen/__init__.py", line 26, in rebuild
> G()
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/cypari-2.1.4/src/autogen/generator.py", line 341, in __call__
> self.handle_pari_function(**v)
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/cypari-2.1.4/src/autogen/generator.py", line 234, in handle_pari_function
> doc = get_rest_doc(function)
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/cypari-2.1.4/src/autogen/doc.py", line 340, in get_rest_doc
> raw = get_raw_doc(function)
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/cypari-2.1.4/src/autogen/doc.py", line 274, in get_raw_doc
> raise RuntimeError("no help found for '{}'".format(function))
> RuntimeError: no help found for 'besseljzero'
> error: subprocess-exited-with-error
>
> × Getting requirements to build wheel did not run successfully.
> │ exit code: 1
> ╰─> See above for output.
>
> note: This error originates from a subprocess, and is likely not a problem with pip.
> full command: /usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/bin/python3 /usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py get_requires_for_build_wheel /tmp/tmp7ccw9g41
> cwd: /usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/cypari-2.1.4/src
> Getting requirements to build wheel: finished with status 'error'
> error: subprocess-exited-with-error
>
> × Getting requirements to build wheel did not run successfully.
> │ exit code: 1
> ╰─> See above for output.
>
> note: This error originates from a subprocess, and is likely not a problem with pip.
> Warning: building with "python3 -m pip wheel --wheel-dir=dist --verbose --no-deps --no-index --isolated --ignore-requires-python --find-links=/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/lib/sage/wheels" failed.
> Retrying with "python3 -m pip wheel --wheel-dir=dist --verbose --no-deps --no-index --isolated --ignore-requires-python --no-build-isolation --no-binary :all:".
> Processing /usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/cypari-2.1.4/src
> Preparing metadata (pyproject.toml): started
> Running command Preparing metadata (pyproject.toml)
> running dist_info
> creating /tmp/pip-modern-metadata-9u5fu2aj/cypari2.egg-info
> writing /tmp/pip-modern-metadata-9u5fu2aj/cypari2.egg-info/PKG-INFO
> writing dependency_links to /tmp/pip-modern-metadata-9u5fu2aj/cypari2.egg-info/dependency_links.txt
> writing requirements to /tmp/pip-modern-metadata-9u5fu2aj/cypari2.egg-info/requires.txt
> writing top-level names to /tmp/pip-modern-metadata-9u5fu2aj/cypari2.egg-info/top_level.txt
> writing manifest file '/tmp/pip-modern-metadata-9u5fu2aj/cypari2.egg-info/SOURCES.txt'
> Generating PARI functions: (!_) (#_) (%) (%#) (+_) (-_) Catalan Col Colrev (DEBUGLEVEL) Euler I List Map Mat Mod (O) (O(_^_)) Pi Pol Polrev Qfb Ser Set Str Strchr Strexpand Strprintf Strtex Vec Vecrev Vecsmall ([_.._]) ([_|_<-_,_;_]) ([_|_<-_,_]) (_!) (_!=_) (_#) (_%=_) (_%_) (_&&_) (_') (_'_) (_(_)) (_*=_) (_*_) (_++) (_+=_) (_+_) (_--) (_-=_) (_-_) (_.a1) (_.a2) (_.a3) (_.a4) (_.a6) (_.area) (_.b2) (_.b4) (_.b6) (_.b8) (_.bid) (_.bnf) (_.c4) (_.c6) (_.clgp) (_.codiff) (_.cyc) (_.diff) (_.disc) (_.e) (_.eta) (_.f) (_.fu) (_.gen) (_.group) (_.index) (_.j) (_.mod) (_.nf) (_.no) (_.normfu) (_.omega) (_.orders) (_.p) (_.pol) (_.polabs) (_.r1) (_.r2) (_.reg) (_.roots) (_.sign) (_.t2) (_.tate) (_.tu) (_.zk) (_.zkst) (_/=_) (_/_) (_<<=_) (_<<_) (_<=_) (_<_) (_===_) (_==_) (_>=_) (_>>=_) (_>>_) (_>_) (_F2xq_log_Coppersmith_worker) (_Flxq_log_Coppersmith_worker) (_FpM_ratlift_worker) (_Fp_log_sieve_worker) (_QM_charpoly_ZX_worker) (_QXQ_div_worker) (_QXQ_inv_worker) (_RgM_ZM_mul_worker) (_ZM_det_worker) (_ZM_gauss_worker) (_ZM_inv_worker) (_ZM_ker_worker) (_ZM_mul_worker) (_ZXQX_composedsum_worker) (_ZXQX_resultant_worker) (_ZXQ_minpoly_worker) (_ZX_ZXY_resultant_worker) (_ZX_composedsum_worker) (_ZX_gcd_worker) (_ZX_resultant_worker) (_ZabM_inv_worker) (_[_,]) (_[_,_]) (_[_.._,_.._]) (_[_.._]) (_\/=_) (_\/_) (_\=_) (_\_) (_^_) (_^s) (__) (_aprcl_step4_worker) (_aprcl_step6_worker) (_avma) (_badtype) (_cast) (_cgetg) (_chinese_unit_worker) (_const_expr) (_const_quote) (_const_real) (_const_smallreal) (_decl_base) (_decl_ext) (_def_TeXstyle) (_def_breakloop) (_def_colors) (_def_compatible) (_def_datadir) (_def_debug) (_def_debugfiles) (_def_debugmem) (_def_echo) (_def_factor_add_primes) (_def_factor_proven) (_def_format) (_def_graphcolormap) (_def_graphcolors) (_def_help) (_def_histfile) (_def_histsize) (_def_lines) (_def_linewrap) (_def_log) (_def_logfile) (_def_nbthreads) (_def_new_galois_format) (_def_output) (_def_parisize) (_def_parisizemax) (_def_path) (_def_plothsizes) (_def_prettyprinter) (_def_primelimit) (_def_prompt) (_def_prompt_cont) (_def_psfile) (_def_readline) (_def_realbitprecision) (_def_realprecision) (_def_recover) (_def_secure) (_def_seriesprecision) (_def_simplify) (_def_sopath) (_def_strictargs) (_def_strictmatch) (_def_threadsize) (_def_threadsizemax) (_def_timer) (_default_check) (_default_marker) (_derivfun) (_diffptr) (_dirartin_worker) (_direllnf_worker) (_direllsympow_worker) (_dirgenus2_worker) (_dirhgm_worker) (_ecpp_ispsp_worker) (_ecpp_sqrt_worker) (_ecpp_step2_worker) (_eisker_worker) (_ellQ_factorback_worker) (_err_primes) (_err_type) (_eval_mnemonic) (_factor_Aurifeuille) (_factor_Aurifeuille_prime) (_forcomposite_init) (_forcomposite_next) (_formatcode) (_forpart_init) (_forpart_next) (_forperm_init) (_forperm_next) (_forprime_init) (_forprime_next) (_forprime_next_) (_forprimestep_init) (_forsubset_init) (_forsubset_next) (_forvec_init) (_forvec_next) (_gc_needed) (_gerepileall) (_gerepileupto) (_header_algebras) (_header_combinatorics) (_header_conversions) (_header_default) (_header_elliptic_curves) (_header_graphic) (_header_hypergeometric_motives) (_header_l_functions) (_header_linear_algebra) (_header_modular_forms) (_header_modular_symbols) (_header_number_fields) (_header_number_theoretical) (_header_operators) (_header_polynomials) (_header_programming/control) (_header_programming/parallel) (_header_programming/specific) (_header_sums) (_header_transcendental) (_iferr_CATCH) (_iferr_CATCH_reset) (_iferr_ENDCATCH) (_iferr_error) (_iferr_rethrow) (_inv) (_lerch_worker) (_lfuninit_theta2_worker) (_lfuninit_worker) (_low_stack_lim) (_maxprime) (_multi_if) (_ndec2nbits) (_ndec2prec) (_nflist_A462_worker) (_nflist_A46S46P_worker) (_nflist_A4S4_worker) (_nflist_C32C4_worker) (_nflist_C32D4_worker) (_nflist_C3C3_worker) (_nflist_C3_worker) (_nflist_C4vec_worker) (_nflist_C5_worker) (_nflist_C6_worker) (_nflist_C9_worker) (_nflist_CL_worker) (_nflist_D4_worker) (_nflist_D612_worker) (_nflist_D9_worker) (_nflist_DL_worker) (_nflist_Mgen_worker) (_nflist_S32_worker) (_nflist_S36_worker) (_nflist_S3C3_worker) (_nflist_S3I_worker) (_nflist_S3R_worker) (_nflist_S462_worker) (_nflist_S46M_worker) (_nflist_V4_worker) (_norange) (_nxMV_polint_worker) (_parapply_slice_worker) (_pareval_worker) (_parfor_init) (_parfor_next) (_parfor_stop) (_parfor_worker) (_parforeach_init) (_parforeach_next) (_parforeach_stop) (_parforprime_init) (_parforprime_next) (_parforprime_stop) (_parforprimestep_init) (_parforstep_init) (_parforstep_next) (_parforstep_stop) (_parforvec_init) (_parforvec_next) (_parforvec_stop) (_parsum_slice_worker) (_partmap_reverse_frac_worker) (_parvector_worker) (_polclass_worker) (_polint_worker) (_polmodular_worker) (_primecertisvalid_ecpp_worker) (_proto_code) (_proto_max_args) (_proto_ret) (_ramanujantau_worker) (_safecoeff) (_stack_lim) (_strtoclosure) (_taugen_n_worker) (_tovec) (_tovecprec) (_type_preorder) (_typedef) (_u_forprime_init) (_u_forprime_next) (_void_if) (_wrap_G) (_wrap_GG) (_wrap_Gp) (_wrap_bG) (_wrap_vG) (_||_) (_~) abs acos acosh addhelp addprimes agm airy alarm algadd algalgtobasis algaut algb algbasis algbasistoalg algcenter algcentralproj algchar algcharpoly algdegree algdep algdim algdisc algdivl algdivr alggroup alggroupcenter alghasse alghassef alghassei algindex alginit alginv alginvbasis algisassociative algiscommutative algisdivision algisdivl algisinv algisramified algissemisimple algissimple algissplit alglatadd alglatcontains alglatelement alglathnf alglatindex alglatinter alglatlefttransporter alglatmul alglatrighttransporter alglatsubset algmakeintegral algmul algmultable algneg algnorm algpoleval algpow algprimesubalg algquotient algradical algramifiedplaces algrandom algrelmultable algsimpledec algsplit algsplittingdata algsplittingfield algsqr algsub algsubalg algtableinit algtensor algtomatrix algtrace algtype (alias) (allocatemem) apply arg arity asin asinh asympnum asympnumraw atan atanh bernfrac bernpol bernreal bernvec besselh1 besselh2 besseli besselj besseljh besseljzeroTraceback (most recent call last):
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
> main()
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
> json_out['return_val'] = hook(**hook_input['kwargs'])
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 149, in prepare_metadata_for_build_wheel
> return hook(metadata_directory, config_settings)
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/setuptools/build_meta.py", line 366, in prepare_metadata_for_build_wheel
> self.run_setup()
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/setuptools/build_meta.py", line 311, in run_setup
> exec(code, locals())
> File "<string>", line 68, in <module>
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/setuptools/__init__.py", line 103, in setup
> return distutils.core.setup(**attrs)
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 185, in setup
> return run_commands(dist)
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
> dist.run_commands()
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands
> self.run_command(cmd)
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/setuptools/dist.py", line 963, in run_command
> super().run_command(command)
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
> cmd_obj.run()
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/setuptools/command/dist_info.py", line 91, in run
> self.egg_info.run()
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/setuptools/command/egg_info.py", line 321, in run
> self.find_sources()
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/setuptools/command/egg_info.py", line 329, in find_sources
> mm.run()
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/setuptools/command/egg_info.py", line 551, in run
> self.add_defaults()
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/setuptools/command/egg_info.py", line 589, in add_defaults
> sdist.add_defaults(self)
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/setuptools/command/sdist.py", line 112, in add_defaults
> super().add_defaults()
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/setuptools/_distutils/command/sdist.py", line 251, in add_defaults
> self._add_defaults_ext()
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/setuptools/_distutils/command/sdist.py", line 335, in _add_defaults_ext
> build_ext = self.get_finalized_command('build_ext')
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 305, in get_finalized_command
> cmd_obj.ensure_finalized()
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 111, in ensure_finalized
> self.finalize_options()
> File "<string>", line 32, in finalize_options
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/cypari-2.1.4/src/autogen/__init__.py", line 26, in rebuild
> G()
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/cypari-2.1.4/src/autogen/generator.py", line 341, in __call__
> self.handle_pari_function(**v)
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/cypari-2.1.4/src/autogen/generator.py", line 234, in handle_pari_function
> doc = get_rest_doc(function)
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/cypari-2.1.4/src/autogen/doc.py", line 340, in get_rest_doc
> raw = get_raw_doc(function)
> File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/cypari-2.1.4/src/autogen/doc.py", line 274, in get_raw_doc
> raise RuntimeError("no help found for '{}'".format(function))
> RuntimeError: no help found for 'besseljzero'
> error: subprocess-exited-with-error
>
> × Preparing metadata (pyproject.toml) did not run successfully.
> │ exit code: 1
> ╰─> See above for output.
>
> note: This error originates from a subprocess, and is likely not a problem with pip.
> full command: /usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/bin/python3 /usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py prepare_metadata_for_build_wheel /tmp/tmpiav_yyow
> cwd: /usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/cypari-2.1.4/src
> Preparing metadata (pyproject.toml): finished with status 'error'
> error: metadata-generation-failed
>
> × Encountered error while generating package metadata.
> ╰─> See above for output.
>
> note: This is an issue with the package mentioned above, not pip.
> hint: See above for details.
> ********************************************************************************
> Error building a wheel for cypari-2.1.4
> ********************************************************************************
>
> real 0m10.402s
> user 0m9.171s
> sys 0m1.255s
> ************************************************************************
> Error installing package cypari-2.1.4
> ************************************************************************
> Please email sage-devel (http://groups.google.com/group/sage-devel)
> explaining the problem and including the log files
> /usr/local/sage/sage-10.3/logs/pkgs/cypari-2.1.4.log
> and
> /usr/local/sage/sage-10.3/config.log
> Describe your computer, operating system, etc.
> If you want to try to fix the problem yourself, *don't* just cd to
> /usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/cypari-2.1.4 and type 'make' or whatever is appropriate.
> Instead, the following commands setup all environment variables
> correctly and load a subshell for you to debug the error:
> (cd '/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/cypari-2.1.4' && '/usr/local/sage/sage-10.3/sage' --buildsh)
> When you are done debugging, you can type "exit" to leave the subshell.
> ************************************************************************

signature.asc

John Cremona

unread,
Mar 20, 2024, 10:08:13 AMMar 20
to sage-r...@googlegroups.com
On Wed, 20 Mar 2024 at 12:08, <dim...@gmail.com> wrote:
On Wed, Mar 20, 2024 at 11:53:49AM +0000, John Cremona wrote:
> Sorry but I have another issue, different machine, also ubuntu 20.04:
>
> The following package(s) may have failed to build (not necessarily
> during this run of 'make all-start'):
>
> * package:         cypari-2.1.4
>   last build time: Mar 20 11:41
>   log file:        /usr/local/sage/sage-10.3/logs/pkgs/cypari-2.1.4.log
>
> Log attached.
>
> If it is relevant, I do have a recent pari installed and configure decided
> it was suitable.

the error is

   File "/usr/local/sage/sage-10.3/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/cypari-2.1.4/src/autogen/doc.py", line 274, in get_raw_doc
      raise RuntimeError("no help found for '{}'".format(function))
  RuntimeError: no help found for 'besseljzero'
  error: subprocess-exited-with-error

which indicates that your pari help data (used by cypari2) was not installed in a location
understood by cypari2, or not installed at all.


Good idea:  on this machine gphelp runs /usr/bin/gphelp which is old (version 2.13.3), while I have a new pari installed in /usr/local.  Now, configure finds that OK (including gphelp) and concludes that it does not need to install pari.  But cypari is finding the wrong version.  I uninstalled the ubuntu libpari package and also pari-doc and now default gphelp finds the right one.

I see from the log that configure decides to build cypari since cysignals is not installed; but when cysignals is installed, that installs the old version of pari (2.13.3) resulting in the failure of cypari to install.

I am rebuilding from scratch now.  Thanks again, Dima.  Next time I will try (even) harder to diagnose the problem myself!

John


 
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