Sage 9.7.rc1 released

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Volker Braun

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Sep 7, 2022, 7:39:00 PM9/7/22
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As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html

08202bc1ba7 (HEAD -> develop, trac/develop, tag: 9.7.rc1) Updated SageMath version to 9.7.rc1
2e5af062ddd Trac #33833: Make furo sage standard doc theme
97dacf88f3c Trac #34450: Standard wheel packages
b37ed1cf0cc Trac #34152: Remove remaining dependencies of bootstrap on gettext (AC_LIB_RPATH etc.)
cae9ee5177a (tag: 9.7.rc0) Updated SageMath version to 9.7.rc0

Kwankyu Lee

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Sep 7, 2022, 8:37:34 PM9/7/22
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Great! Thanks.

G. M.-S.

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Sep 7, 2022, 9:38:00 PM9/7/22
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This is on an Apple Silicon Mac with Homebrew up to date (make and make pytest and  make ptestlong).

On macOS 11.6.8 (Big Sur) with Xcode 13.2.1:  make ptestlong gives
----------------------------------------------------------------------
sage -t --long --warn-long 51.2 --random-seed=198215171617055102915898533596178546091 src/sage/interfaces/expect.py  # 2 doctests failed
sage -t --long --warn-long 51.2 --random-seed=198215171617055102915898533596178546091 src/sage/matrix/matrix_gf2e_dense.pyx  # 1 doctest failed
sage -t --long --warn-long 51.2 --random-seed=198215171617055102915898533596178546091 src/sage/structure/coerce_actions.pyx  # 3 doctests failed
----------------------------------------------------------------------

The first one succeeds when run alone, as usual.
The second one is known (see https://trac.sagemath.org/ticket/33212).
But the third one seems to be persistent:
sage -t --long --warn-long 51.2 --random-seed=198215171617055102915898533596178546091 src/sage/structure/coerce_actions.pyx
**********************************************************************
File "src/sage/structure/coerce_actions.pyx", line 773, in sage.structure.coerce_actions.IntegerMulAction._act_
Failed example:
    alarm(0.001); 2^(10^7) * P
Expected:
    Traceback (most recent call last):
    ...
    AlarmInterrupt
Got:
    (0 : 1 : 0)
**********************************************************************
File "src/sage/structure/coerce_actions.pyx", line 781, in sage.structure.coerce_actions.IntegerMulAction._act_
Failed example:
    from cysignals.tests import print_sig_occurred
Exception raised:
    Traceback (most recent call last):
      File "/Users/gms/SageMath/Git/sage/src/sage/doctest/forker.py", line 695, in _run
        self.compile_and_execute(example, compiler, test.globs)
      File "/Users/gms/SageMath/Git/sage/src/sage/doctest/forker.py", line 1093, in compile_and_execute
        exec(compiled, globs)
      File "<doctest sage.structure.coerce_actions.IntegerMulAction._act_[12]>", line 1, in <module>
        from cysignals.tests import print_sig_occurred
      File "<frozen importlib._bootstrap>", line 404, in parent
      File "src/cysignals/signals.pyx", line 310, in cysignals.signals.python_check_interrupt
    cysignals.signals.AlarmInterrupt
**********************************************************************
File "src/sage/structure/coerce_actions.pyx", line 782, in sage.structure.coerce_actions.IntegerMulAction._act_
Failed example:
    print_sig_occurred()
Exception raised:
    Traceback (most recent call last):
      File "/Users/gms/SageMath/Git/sage/src/sage/doctest/forker.py", line 695, in _run
        self.compile_and_execute(example, compiler, test.globs)
      File "/Users/gms/SageMath/Git/sage/src/sage/doctest/forker.py", line 1093, in compile_and_execute
        exec(compiled, globs)
      File "<doctest sage.structure.coerce_actions.IntegerMulAction._act_[13]>", line 1, in <module>
        print_sig_occurred()
    NameError: name 'print_sig_occurred' is not defined
**********************************************************************
1 item had failures:
   3 of  15 in sage.structure.coerce_actions.IntegerMulAction._act_
    [150 tests, 3 failures, 0.29 s]

Some logs attached.

Unable to test on macOS 12.5.1 (Monterey) for the moment.

Guillermo
config.log
install.log
test.log

Eric Gourgoulhon

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Sep 9, 2022, 5:07:28 AM9/9/22
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On Ubuntu 20.04 running on Xeon E5-2623 + 16 GB RAM:
- incremental build (-j16) from 9.7.rc0, with system python (3.8.10): OK
- make ptestlong --> "All tests passed!"

Eric.

Kenji Iohara

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Sep 9, 2022, 5:13:20 AM9/9/22
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On My MacbookPro with Intel Core i5, OS 12.5.1 with Homebrew and Python 3.10.*, it compiled from the first build.
make ptestlong gives 

----------------------------------------------------------------------

sage -t --long --warn-long 223.7 --random-seed=210836810734712272185542644691790603860 src/sage/interfaces/expect.py  # 2 doctests failed

----------------------------------------------------------------------

Total time for all tests: 9094.6 seconds

    cpu time: 20792.6 seconds

    cumulative wall time: 35786.1 seconds

Features detected for doctesting: dvipng,gfan,graphviz,imagemagick,nauty,palp,pandoc,pdf2svg,pdftocairo,polytopes_db,sage.combinat,sage.geometry.polyhedron,sage.graphs,sage.groups,sage.misc.cython,sage.plot,sage.rings.number_field,sage.rings.padics,sage.rings.real_double,sage.symbolic,sagemath_doc_html,sphinx

============================= test session starts ==============================

platform darwin -- Python 3.10.6, pytest-7.1.3, pluggy-1.0.0

rootdir: /Users/iohara/Desktop/sage-9.7.rc1/src, configfile: tox.ini

collected 0 items / 1 skipped                                                  


============================== 1 skipped in 0.01s ==============================

make[2]: *** [test] Error 1

make[1]: *** [ptest] Error 2

make: *** [ptestlong] Error 2


Kenji

2022年9月9日(金) 11:07 Eric Gourgoulhon <egourg...@gmail.com>:
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tsc...@ucdavis.edu

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Sep 10, 2022, 12:37:54 AM9/10/22
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The first one succeeds when run alone, as usual.
The second one is known (see https://trac.sagemath.org/ticket/33212).
But the third one seems to be persistent:
sage -t --long --warn-long 51.2 --random-seed=198215171617055102915898533596178546091 src/sage/structure/coerce_actions.pyx


Looks like your computer is too fast for the test in coerce_actions.pyx.

Best,
Travis
 

G. M.-S.

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Sep 10, 2022, 4:41:28 AM9/10/22
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Thanks, Travis, that was it:  Increasing the load (with free SystemLoad by Marcel Bresink), I get

sage -t --long --warn-long 51.2 --random-seed=198215171617055102915898533596178546091 src/sage/structure/coerce_actions.pyx
    [150 tests, 0.52 s]
----------------------------------------------------------------------
All tests passed!
----------------------------------------------------------------------
Total time for all tests: 0.7 seconds
    cpu time: 0.2 seconds
    cumulative wall time: 0.5 seconds
Features detected for doctesting: sage.groups

Guillermo

G. M.-S.

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Sep 10, 2022, 4:51:01 AM9/10/22
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Hi Kenji.

This happens to me very often.
But it disappears if you run it standalone:

% $SAGE_ROOT/sage -t --long --warn-long 223.7 --random-seed=210836810734712272185542644691790603860 src/sage/interfaces/expect.py

HTH,

Guillermo

G. M.-S.

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Sep 10, 2022, 5:34:03 AM9/10/22
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This is on Apple Silicon Macs with Homebrew up to date (make and make pytest and  make ptestlong).

On macOS 12.5.1 (Monterey) with Xcode 13.4.1:  no problems.

On macOS 11.6.8 (Big Sur) with Xcode 13.2.1:  make ptestlong gives
----------------------------------------------------------------------

sage -t --long --warn-long 51.2 --random-seed=198215171617055102915898533596178546091 src/sage/interfaces/expect.py  # 2 doctests failed
sage -t --long --warn-long 51.2 --random-seed=198215171617055102915898533596178546091 src/sage/matrix/matrix_gf2e_dense.pyx  # 1 doctest failed
sage -t --long --warn-long 51.2 --random-seed=198215171617055102915898533596178546091 src/sage/structure/coerce_actions.pyx  # 3 doctests failed
----------------------------------------------------------------------

The first one succeeds when run alone, as usual.
The second one is known (see https://trac.sagemath.org/ticket/33212).
Travis found the third is due to the computer being "too fast" (!).  Indeed, after increasing the load (with the free SystemLoad app by Marcel Bresink), it succeeds.

Guillermo

On Thu, 8 Sept 2022 at 01:39, Volker Braun <vbrau...@gmail.com> wrote:

Emmanuel Charpentier

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Sep 11, 2022, 6:02:06 AM9/11/22
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On Debian testing running on core i7 + 16 GB RAM, the documentatiuon of `plot3d` doesn't build. This seems to be ultimately related to :

```
[sagemath_doc_html-none] [plot3d   ]   File "/usr/local/sage-9/src/sage/interfaces/
maxima_lib.py", line 114, in <module>
[sagemath_doc_html-none] [plot3d   ]     ecl_eval("(require 'maxima)")
[sagemath_doc_html-none] [plot3d   ]   File "sage/libs/ecl.pyx", line 1352, in sage
.libs.ecl.ecl_eval
[sagemath_doc_html-none] [plot3d   ]     cpdef EclObject ecl_eval(str s):
[sagemath_doc_html-none] [plot3d   ]   File "sage/libs/ecl.pyx", line 1375, in sage
.libs.ecl.ecl_eval
[sagemath_doc_html-none] [plot3d   ]     o=ecl_safe_eval(python_to_ecl(s, True))
[sagemath_doc_html-none] [plot3d   ]   File "sage/libs/ecl.pyx", line 321, in sage.
libs.ecl.ecl_safe_eval
[sagemath_doc_html-none] [plot3d   ]     raise RuntimeError("ECL says: {}".format(m
essage))
[sagemath_doc_html-none] [plot3d   ] RuntimeError: ECL says: Module error: Don't know how to REQUIRE MAXIMA.
[sagemath_doc_html-none] [plot3d   ] Extension error:
[sagemath_doc_html-none] [plot3d   ] Cell raised uncaught exception:
[sagemath_doc_html-none] [plot3d   ] ---------------------------------------------------------------------------
[sagemath_doc_html-none] [plot3d   ] RuntimeError                              Traceback (most recent call last)
[sagemath_doc_html-none] [plot3d   ] Input In [37], in <cell line: 2>()
```
`install.log` follows as an answer to this answer (Google Groups interface will no longer let you attach an arbitrary file to your posts...).

emanuel.c...@gmail.com

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Sep 11, 2022, 6:11:43 AM9/11/22
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Here comes the log (two attempts, before and after cleaning the docs).

HTH,
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install.log.gz

François Bissey

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Sep 11, 2022, 6:17:06 AM9/11/22
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That kind of error means the maxima.fas library has not been built or
installed or possibly not installed in the right place. Are you using
the system maxima or was sage's maxima build?

François
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Emmanuel Charpentier

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Sep 11, 2022, 6:25:22 AM9/11/22
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Sage's Maxima (5.45.p0). Debian's maxima is gcl-based, hence unusable in Sage. Not even installed on this machine.

BTW : as far as I know, a system's maxima can't (yet) be used by Sage...

François Bissey

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Sep 11, 2022, 6:27:23 AM9/11/22
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Emmanuel Charpentier

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Sep 11, 2022, 6:39:17 AM9/11/22
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System's ecl, as far as I can tell (its `usr/bin/ecl', which is system's territory...)

Emmanuel Charpentier

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Sep 11, 2022, 6:42:24 AM9/11/22
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BTW : this has worked perfectly up to and oncluding 9.7.rc0...

Emmanuel Charpentier

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Sep 11, 2022, 6:46:36 AM9/11/22
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BTW :


charpent@zen-book-flip:/usr/local/sage-9$ dpkg -l "*ecl*"
Souhait=inconnU/Installé/suppRimé/Purgé/H=à garder
| État=Non/Installé/fichier-Config/dépaqUeté/échec-conFig/H=semi-installé/W=att>
|/ Err?=(aucune)/besoin Réinstallation (État,Err: majuscule=mauvais)
||/ Nom                              Version       Architecture Description
+++-================================-=============-============-===============>
ii  ecl                              21.2.1+ds-4   amd64        Embeddable Comm>
un  ecl-doc                          <aucune>      <aucune>     (aucune descrip>
ii  eclib-tools                      20220621-1+b1 amd64        Programs for mo>
ii  gir1.2-spiceclientglib-2.0:amd64 0.41-2        amd64        GObject for com>
ii  gir1.2-spiceclientgtk-3.0:amd64  0.41-2        amd64        GTK3 widget for>
ii  libecl-dev:amd64                 21.2.1+ds-4   amd64        Embeddable Comm>
ii  libecl21.2:amd64                 21.2.1+ds-4   amd64        Embeddable Comm>
un  libkf5declarative5               <aucune>      <aucune>     (aucune descrip>
un  libmoosex-cascadeclearing-perl   <aucune>      <aucune>     (aucune descrip>
un  libmoosex-declare-perl           <aucune>      <aucune>     (aucune descrip>
un  php-pecl-http                    <aucune>      <aucune>     (aucune descrip>
un  qt6-declarative-abi              <aucune>      <aucune>     (aucune descrip>
un  qtdeclarative-abi-5-15-4         <aucune>      <aucune>     (aucune descrip>

François Bissey

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Sep 11, 2022, 6:46:38 AM9/11/22
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Which really makes me think that a system update is the cause of the
problem. Changes are not significant for most people between rc0 and rc1.

Of course that theory could be checked by checking out rc0 and seeing
if that builds.

François
> <https://groups.google.com/d/msgid/sage-release/0a45ec28-9531-4f93-afca-1c92c5a2dbf6n%40googlegroups.com?utm_medium=email&utm_source=footer
> <https://groups.google.com/d/msgid/sage-release/0a45ec28-9531-4f93-afca-1c92c5a2dbf6n%40googlegroups.com?utm_medium=email&utm_source=footer>>.
>
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Emmanuel Charpentier

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Sep 11, 2022, 6:50:43 AM9/11/22
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Le dimanche 11 septembre 2022 à 12:46:38 UTC+2, François Bissey a écrit :

Which really makes me think that a system update is the cause of the
problem. Changes are not significant for most people between rc0 and rc1.

Of course that theory could be checked by checking out rc0 and seeing
if that builds.

Can it be done by telling git(how ?) to use 9.7.rc0 ?

François Bissey

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Sep 11, 2022, 6:55:52 AM9/11/22
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git checkout tags/9.7.rc0

If I am not mistaken.

On 11/09/22 22:50, Emmanuel Charpentier wrote:
> Can it be done by telling |git|(how ?) to use 9.7.rc0 ?
>

Emmanuel Charpentier

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Sep 11, 2022, 7:08:30 AM9/11/22
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Doesn't build. `./configure --enable-download-from-upstream-url` fails with :

```
configure: error: Directory /usr/local/sage-9/build/pkgs/gnulib is missing. Re-run bootstrap.
```

which amounts to rebuilding the whole shebang. Not fun...

I'll try to rebuild 9.7.rc1 with configuring Sage's `ecl` and `eclib`.

Advice for ticket filing ?

Dima Pasechnik

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Sep 11, 2022, 7:13:29 AM9/11/22
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Why do you think that running bootstrap will trigger a full rebuild? It does update ./configure and few other related things.

Dima

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Thierry Dumont

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Sep 11, 2022, 7:19:00 AM9/11/22
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Le 11/09/2022 à 12:02, Emmanuel Charpentier a écrit :
> On Debian testing running on core i7 + 16 GB RAM, the documentatiuon of
> `plot3d` doesn't build. This seems to be ultimately related to :
>
> ```
>
I had the same problem, but after doing make distclean, the problem
disapeared when rebuilding (I am also using Debian Testing).

t.d.

Emmanuel Charpentier

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Sep 11, 2022, 8:03:06 AM9/11/22
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After ./configure --enable-download-from-upstream-url --with-system-ecl=no --with-system-eclib=no, build suceeded. Running ptestlong now.

Emmanuel Charpentier

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Sep 11, 2022, 8:14:22 AM9/11/22
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In the past, ./bootstrap triggered the recompilation of a large fraction of Sage’s modules. So I was wary…

Anyway, ./configureing Sage’s ecl and eclib trggered (as expected) recompilation of maxima and fricas, which are not exactly lightweight…

Emmanuel Charpentier

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Sep 11, 2022, 8:28:59 AM9/11/22
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This is now [Trac#34517](https://trac.sagemath.org/ticket/34517#ticket). Feel free to correct it...

Emmanuel Charpentier

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Sep 11, 2022, 11:38:22 AM9/11/22
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Passes `ptestlong` with `All tests passed!`.

HTH,

Kenji Iohara

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Sep 12, 2022, 12:44:10 AM9/12/22
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Hi Guillermo,

 Yes, you are right. Thanks for this remark.

Kenji

10/09/2022 10:50、G. M.-S. <list...@gmail.com>のメール:

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John H Palmieri

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Sep 13, 2022, 6:03:33 PM9/13/22
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I just upgraded to OS X 12.6, with an accompanying change to Xcode. I am seeing this warning when doctesting:

sage -t --random-seed=76645062578000018559554244400680707390 src/sage/misc/sagedoc.py
**********************************************************************
File "src/sage/misc/sagedoc.py", line 666, in sage.misc.sagedoc.format
Failed example:
    cython('\n'.join(cython_code))                                    # optional - sage.misc.cython
Expected nothing
Got:
    ld: warning: -undefined dynamic_lookup may not work with chained fixups
**********************************************************************

(It appears for lots of files, so there are lots of doctest failures.) Anyone else seeing it?

G. M.-S.

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Sep 13, 2022, 9:27:53 PM9/13/22
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Hi John,

Yes, here is what I get.

This is on Apple Silicon Macs with Homebrew up to date (make and make pytest and  make ptestlong).

On macOS 12.5.1 (Monterey) with Xcode 13.4.1:  no problems.
On macOS 12.6 (Monterey) with Xcode 13.4.1:  make ptestlong gives
    ld: warning: -undefined dynamic_lookup may not work with chained fixups
62 times.
On macOS 12.6 (Monterey) with Xcode 14.0:  make ptestlong gives
    ld: warning: -undefined dynamic_lookup may not work with chained fixups
62 times.
Could it be related to the macOS update rather than the Xcode one?

On macOS 11.7 (Big Sur) with Xcode 13.2.1:  make ptestlong gives the usual
----------------------------------------------------------------------
sage -t --long --warn-long 50.1 --random-seed=318245788045791700970939156526720975873 src/sage/matrix/matrix_gf2e_dense.pyx  # 1 doctest failed
----------------------------------------------------------------------

Guillermo

John H Palmieri

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Sep 13, 2022, 9:44:55 PM9/13/22
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Thank you for the confirmation. I now see it on two OS X machines, one Intel, one Apple Silicon.

John H Palmieri

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Sep 14, 2022, 4:27:23 PM9/14/22
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Kenji Iohara

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Sep 14, 2022, 7:29:07 PM9/14/22
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On MacBookPro with Intel Core i5, with Mac OS 12.6 and Xcode 14, 
Sage compiled fro the first build but for make ptestlong gives

sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/structure/element.pyx  # 4 doctests failed
sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/misc/sageinspect.py  # 24 doctests failed
sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/tests/cmdline.py  # 4 doctests failed
sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/rings/qqbar.py  # 1 doctest failed
sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/repl/ipython_extension.py  # 2 doctests failed
sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/rings/tate_algebra_ideal.pyx  # 6 doctests failed
sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/ext/memory_allocator.pxd  # 6 doctests failed
sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/structure/factory.pyx  # 1 doctest failed
sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/features/__init__.py  # 2 doctests failed
sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/env.py  # 1 doctest failed
sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/rings/polynomial/ore_polynomial_element.pyx  # 6 doctests failed
sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/cpython/cython_metaclass.pyx  # 4 doctests failed
sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/misc/superseded.py  # 4 doctests failed
sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/arith/long.pxd  # 14 doctests failed
sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/misc/instancedoc.pyx  # 4 doctests failed
sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/symbolic/pynac.pxi  # 1 doctest failed
sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/docs/instancedoc.py  # 4 doctests failed
sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/rings/integer_fake.pxd  # 1 doctest failed
sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/cpython/wrapperdescr.pxd  # 6 doctests failed
sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/cpython/string.pyx  # 1 doctest failed
sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/misc/session.pyx  # 2 doctests failed
sage -t --long --warn-long 358.6 --random-seed=222745986222340689962776289604247145349 src/sage/repl/load.py  # 2 doctests failed
———————————————————————————————————

Kenji

14/09/2022 22:27、John H Palmieri <jhpalm...@gmail.com>のメール:

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