Build fails at scipy on mac after latest os update

[Kwankyu Lee]

Sage build fails with the following log. I am not sure if this is caused by the latest os update (macOS Monterey 12.3). Is there a quick fix?

...

[scipy-1.7.3]   85 warnings and 2 errors generated.
[scipy-1.7.3]   error: Command "g++ -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -D__ACCELERATE__ -DENABLE_PYTHON_MODULE -D__PYTHRAN__=3 -DPYTHRAN_BLAS_NONE -I/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/pythran -I/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/numpy/core/include -I/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.macosx-12-x86_64-3.9/numpy/distutils/include -I/usr/local/include -I/usr/local/opt/openssl@1.1/include -I/usr/local/opt/sqlite/include -I/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.9/include -I/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9 -c scipy/interpolate/_rbfinterp_pythran.cpp -o build/temp.macosx-12-x86_64-3.9/scipy/interpolate/_rbfinterp_pythran.o -MMD -MF build/temp.macosx-12-x86_64-3.9/scipy/interpolate/_rbfinterp_pythran.o.d -std=c++11 -fno-math-errno -Wno-unused-function -msse -msse2 -msse3" failed with exit status 1
[scipy-1.7.3]
[scipy-1.7.3]   ########### EXT COMPILER OPTIMIZATION ###########
[scipy-1.7.3]   Platform      :
[scipy-1.7.3]     Architecture: x64
[scipy-1.7.3]     Compiler    : gcc
[scipy-1.7.3]
[scipy-1.7.3]   CPU baseline  :
[scipy-1.7.3]     Requested   : 'min'
[scipy-1.7.3]     Enabled     : SSE SSE2 SSE3
[scipy-1.7.3]     Flags       : -msse -msse2 -msse3
[scipy-1.7.3]     Extra checks: none
[scipy-1.7.3]
[scipy-1.7.3]   CPU dispatch  :
[scipy-1.7.3]     Requested   : 'max -xop -fma4'
[scipy-1.7.3]     Enabled     : SSSE3 SSE41 POPCNT SSE42 AVX F16C FMA3 AVX2 AVX512F AVX512CD AVX512_KNL AVX512_SKX AVX512_CLX AVX512_CNL AVX512_ICL
[scipy-1.7.3]     Generated   : none
[scipy-1.7.3]   CCompilerOpt.cache_flush[809] : write cache to path -> /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.9/var/tmp/sage/build/scipy-1.7.3/src/build/temp.macosx-12-x86_64-3.9/ccompiler_opt_cache_ext.py
[scipy-1.7.3]
[scipy-1.7.3]   ########### CLIB COMPILER OPTIMIZATION ###########
[scipy-1.7.3]   Platform      :
[scipy-1.7.3]     Architecture: x64
[scipy-1.7.3]     Compiler    : gcc
[scipy-1.7.3]
[scipy-1.7.3]   CPU baseline  :
[scipy-1.7.3]     Requested   : 'min'
[scipy-1.7.3]     Enabled     : SSE SSE2 SSE3
[scipy-1.7.3]     Flags       : -msse -msse2 -msse3
[scipy-1.7.3]     Extra checks: none
[scipy-1.7.3]
[scipy-1.7.3]   CPU dispatch  :
[scipy-1.7.3]     Requested   : 'max -xop -fma4'
[scipy-1.7.3]     Enabled     : SSSE3 SSE41 POPCNT SSE42 AVX F16C FMA3 AVX2 AVX512F AVX512CD AVX512_KNL AVX512_SKX AVX512_CLX AVX512_CNL AVX512_ICL
[scipy-1.7.3]     Generated   : none
[scipy-1.7.3]   CCompilerOpt.cache_flush[809] : write cache to path -> /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.9/var/tmp/sage/build/scipy-1.7.3/src/build/temp.macosx-12-x86_64-3.9/ccompiler_opt_cache_clib.py
[scipy-1.7.3]   error: subprocess-exited-with-error
[scipy-1.7.3]  
[scipy-1.7.3]   × Building wheel for scipy (pyproject.toml) did not run successfully.
[scipy-1.7.3]   │ exit code: 1
[scipy-1.7.3]   ╰─> See above for output.
[scipy-1.7.3]  
[scipy-1.7.3]   note: This error originates from a subprocess, and is likely not a problem with pip.
[scipy-1.7.3]   full command: /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.9/bin/python3 /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /var/folders/td/fw1q9ljs311ggyph77rs53_40000gn/T/tmptx5mouc0
[scipy-1.7.3]   cwd: /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.9/var/tmp/sage/build/scipy-1.7.3/src
[scipy-1.7.3]   Building wheel for scipy (pyproject.toml): finished with status 'error'
[scipy-1.7.3]   ERROR: Failed building wheel for scipy
[scipy-1.7.3] Failed to build scipy
[scipy-1.7.3] ERROR: Failed to build one or more wheels
[scipy-1.7.3] ********************************************************************************
[scipy-1.7.3] Error building a wheel for scipy-1.7.3
[scipy-1.7.3] ********************************************************************************
[scipy-1.7.3]
[scipy-1.7.3] real        3m57.787s
[scipy-1.7.3] user        9m29.393s
[scipy-1.7.3] sys        1m16.305s
[scipy-1.7.3] ************************************************************************
[scipy-1.7.3] Error installing package scipy-1.7.3
[scipy-1.7.3] ************************************************************************

[Matthias Koeppe]

See https://trac.sagemath.org/ticket/33522

[Kwankyu Lee]

On Friday, March 18, 2022 at 12:26:59 PM UTC+9 Matthias Koeppe wrote:

See https://trac.sagemath.org/ticket/33522

It works like a charm. Thank you!