Error building sage (sqlite problem)
Christian Weiss
I tried to build a sage server on a SLES11-System. But the
installation was aborted with the following error message:
---------------------------<ERROR
MESSAGE>-----------------------------------
Finished extraction
****************************************************
Host system
uname -a:
Linux algpar1 2.6.27.23-0.1-xen #1 SMP 2009-05-26 17:02:05 -0400
x86_64 x86_64 x86_64 GNU/Linux
****************************************************
****************************************************
GCC Version
gcc -v
Es werden eingebaute Spezifikationen verwendet.
Ziel: x86_64-suse-linux
Konfiguriert mit: ../configure --prefix=/usr --infodir=/usr/share/info
--mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64 --
enable-languages=c,c++,objc,fortran,obj-c++,java,ada --enable-
checking=release --with-gxx-include-dir=/usr/include/c++/4.3 --enable-
ssp --disable-libssp --with-bugurl=http://bugs.opensuse.org/ --with-
pkgversion='SUSE Linux' --disable-libgcj --disable-libmudflap --with-
slibdir=/lib64 --with-system-zlib --enable-__cxa_atexit --enable-
libstdcxx-allocator=new --disable-libstdcxx-pch --enable-version-
specific-runtime-libs --program-suffix=-4.3 --enable-linux-futex --
without-system-libunwind --with-cpu=generic --build=x86_64-suse-linux
Thread-Modell: posix
gcc-Version 4.3.2 [gcc-4_3-branch revision 141291] (SUSE Linux)
****************************************************
bash: symbol lookup error: /home/cweiss/downloads/sage-4.1.rc1/local/
lib/libreadline.so.5: undefined symbol: PC
real 0m0.008s
user 0m0.000s
sys 0m0.000s
sage: An error occurred while installing sqlite-3.5.3.p4
Please email sage-devel http://groups.google.com/group/sage-devel
explaining the problem and send the relevant part of
of /home/cweiss/downloads/sage-4.1.rc1/install.log. Describe your
computer, operating system, etc.
If you want to try to fix the problem, yourself *don't* just cd to
/home/cweiss/downloads/sage-4.1.rc1/spkg/build/sqlite-3.5.3.p4 and
type 'make'.
Instead type "/home/cweiss/downloads/sage-4.1.rc1/sage -sh"
in order to set all environment variables correctly, then cd to
/home/cweiss/downloads/sage-4.1.rc1/spkg/build/sqlite-3.5.3.p4
(When you are done debugging, you can type "exit" to leave the
subshell.)
make[1]: *** [installed/sqlite-3.5.3.p4] Fehler 1
make[1]: Leaving directory `/home/cweiss/downloads/sage-4.1.rc1/spkg'
real 0m0.918s
user 0m0.664s
sys 0m0.108s
Error building Sage.
---------------------------</ERROR
MESSAGE>-----------------------------------
sqlite3 is installed on my SLES11 system (and I hoped that sage could
use it...). Any downloadable binary version of sage won't work.
I am new on Linux and don't know what to do to fix this problem. Maybe
someone of you can help me!
Thanks a lot!
Christian
William Stein
That's a really weird error. Can you post a link to the complete
install log? Also, what happenes if you build sage-4.0.2 (the latest
released version)? Also, is there anything funny about your
computer, e.g., post the output of typing "export" at the command
line.
In particular, this one doesn't work for you?
What error message do you get?
I regularly build Sage on 64-bit Suse Linux 11 with no trouble, which
is how I built the above binary.
-- William
Minh Nguyen
On Wed, Jul 8, 2009 at 11:14 PM, Christian Weiss<weissi...@gmx.de> wrote:
>
> Hello,
>
> I tried to build a sage server on a SLES11-System. But the
> installation was aborted with the following error message:
<SNIP>
> make[1]: *** [installed/sqlite-3.5.3.p4] Fehler 1
> make[1]: Leaving directory `/home/cweiss/downloads/sage-4.1.rc1/spkg'
>
> real 0m0.918s
> user 0m0.664s
> sys 0m0.108s
> Error building Sage.
>
> ---------------------------</ERROR
> MESSAGE>-----------------------------------
>
> sqlite3 is installed on my SLES11 system (and I hoped that sage could
> use it...).
Sage includes sqlite 3, and that is the one that Sage uses. Replacing
components that are shipped with Sage with your system's components
will make debugging an order of magnitude more difficult. As the
number of components shipped with Sage are replaced with your system's
components, the combinatorial explosion is huge and would make
debugging almost impossible.
From the error log, it looks to me that you're not using a stable
version of Sage. In fact, you're using the development version Sage
4.1.rc1.
> Any downloadable binary version of sage won't work.
> I am new on Linux and don't know what to do to fix this problem. Maybe
> someone of you can help me!
--
Regards
Minh Van Nguyen
Christian Weiss
On 8 Jul., 15:23, William Stein <wst...@gmail.com> wrote:
> > of /home/cweiss/downloads/sage-4.1.rc1/install.log. Describe your
> > computer, operating system, etc.
> > If you want to try to fix the problem, yourself *don't* just cd to
> > /home/cweiss/downloads/sage-4.1.rc1/spkg/build/sqlite-3.5.3.p4 and
> > type 'make'.
> > Instead type "/home/cweiss/downloads/sage-4.1.rc1/sage -sh"
> > in order to set all environment variables correctly, then cd to
> > /home/cweiss/downloads/sage-4.1.rc1/spkg/build/sqlite-3.5.3.p4
> > (When you are done debugging, you can type "exit" to leave the
> > subshell.)
> > make[1]: *** [installed/sqlite-3.5.3.p4] Fehler 1
> > make[1]: Leaving directory `/home/cweiss/downloads/sage-4.1.rc1/spkg'
>
> > real 0m0.918s
> > user 0m0.664s
> > sys 0m0.108s
> > Error building Sage.
>
> > ---------------------------</ERROR
> > MESSAGE>-----------------------------------
>
> > sqlite3 is installed on my SLES11 system (and I hoped that sage could
> > use it...). Any downloadable binary version of sage won't work.
> > I am new on Linux and don't know what to do to fix this problem. Maybe
> > someone of you can help me!
>
> In particular, this one doesn't work for you?
>
> What error message do you get?
>
> I regularly build Sage on 64-bit Suse Linux 11 with no trouble, which
> is how I built the above binary.
>
> -- William
IT WORKS! I have downloaded your linked file and: now it works!
Thanks a lot!
Are you any longer interested interested in the log-file of the
aborted installation? Then I put it on my server and give you the
link.
Bye
Christian
William Stein
Not really, since the above works for you. I'm just happy to have
another satisfied customer.
What would be useful would be if you could explain why you wrote
before "Any downloadable binary version of sage won't work" since the
above was just one of the downloadable binaries we posted. It would
be very very useful to our webmaster (Harald Schilly), since clearly
our binary download page failed to help you find the right binary. So
if you could provide some constructive criticism about why it didn't
work for you, that would be nice.
-- William
Minh Nguyen
On Wed, Jul 8, 2009 at 11:54 PM, William Stein<wst...@gmail.com> wrote:
>
> On Wed, Jul 8, 2009 at 6:49 AM, Christian Weiss<weissi...@gmx.de> wrote:
<SNIP>
>> Hello,
>>
>> IT WORKS! I have downloaded your linked file and: now it works!
>>
>> Thanks a lot!
>>
>> Are you any longer interested interested in the log-file of the
>> aborted installation? Then I put it on my server and give you the
>> link.
>
> Not really, since the above works for you. I'm just happy to have
> another satisfied customer.
>
> What would be useful would be if you could explain why you wrote
> before "Any downloadable binary version of sage won't work" since the
> above was just one of the downloadable binaries we posted. It would
> be very very useful to our webmaster (Harald Schilly), since clearly
> our binary download page failed to help you find the right binary. So
> if you could provide some constructive criticism about why it didn't
> work for you, that would be nice.
There have been some complaints about the download pages and we
welcome your feedback on why it doesn't work for you. Recently, Harald
Schilly redesigned the download pages so that download mirrors should
be easily visible on first glance. The rationale behind this redesign
is to reduce traffic on the master Sage server. People are encouraged
to download from a mirror nearest to them; see this page for a list of
mirrors:
http://www.sagemath.org/download.html
Clearly, the redesign or something about the download pages didn't
work as expected. Any thoughts on how we can make it better?
Harald Schilly
> IT WORKS! I have downloaded your linked file and: now it works!
the first time? Was it just a broken download or the wrong file? Ideas
for improvment?
Harald (I work on the website and check that the mirrors behave well)
Dr. David Kirkby
> Hello,
>
> I tried to build a sage server on a SLES11-System. But the
> installation was aborted with the following error message:
> re done debugging, you can type "exit" to leave the
> subshell.)
> make[1]: *** [installed/sqlite-3.5.3.p4] Fehler 1
> make[1]: Leaving directory `/home/cweiss/downloads/sage-4.1.rc1/spkg'
>
> real 0m0.918s
> user 0m0.664s
> sys 0m0.108s
> Error building Sage.
You might want to try
http://sage.math.washington.edu/home/kirkby/Solaris-fixes/sqlite-3.6.17/sqlite-3.6.17.spkg
which is an updated version of sqlite.
It is a trac ticket of mine, which needs review
http://sagetrac.org/sage_trac/ticket/6759
I created the new .spkg, since the old version of sqlite in Sage will
not build with Sun's C compiler. That new .spkg will build with both gcc
and Sun's compiler on Solaris. It might just solve your SUSE issue,
though I have not tested that. They may have paid a bit more attention
to portability in the latest release.
Dave