trying to build sage10.1

[Ayan Mahalanobis]

Hi All,

I am trying to build sage 10.1 from source with no luck. I am using fedora 38. It uses gcc 13. The error occurs when it tries to build sagelib is below.

This is the command it ran just before exit code 1 from g++. It is nasty looking and I am sorry for that. Any help much appreciated.

==================================================

gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -g -O2 -fPIC -I/usr/include/singular -Isage/symbolic -Isage/cpython -I/home/ayan/programs/sage-10.1/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/cypari2 -I/home/ayan/programs/sage-10.1/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/cysignals -I/home/ayan/programs/sage-10.1/src -I/home/ayan/programs/sage-10.1/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/numpy/core/include -I/usr/include/python3.11 -I/home/ayan/programs/sage-10.1/local/var/lib/sage/venv-python3.11/include -I/usr/include/python3.11 -c sage/symbolic/ginac/wildcard.cpp -o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/wildcard.o -std=c++11 -I/usr/include/singular -DSING_NDEBUG -DOM_NDEBUG
[sagelib-10.1]     g++ -std=gnu++11 -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -Wl,-rpath-link,/home/ayan/programs/sage-10.1/local/lib -L/home/ayan/programs/sage-10.1/local/lib -Wl,-rpath,/home/ayan/programs/sage-10.1/local/lib -Wl,-rpath-link,/home/ayan/programs/sage-10.1/local/lib -L/home/ayan/programs/sage-10.1/local/lib -Wl,-rpath,/home/ayan/programs/sage-10.1/local/lib -g -O2 build/temp.linux-x86_64-cpython-311/sage/symbolic/expression.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/add.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/archive.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/assume.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/basic.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/cmatcher.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/constant.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/context.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/ex.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/expair.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/expairseq.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/exprseq.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/fderivative.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/function.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/function_info.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/infinity.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/infoflagbase.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/inifcns.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/inifcns_comb.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/inifcns_gamma.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/inifcns_hyperb.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/inifcns_hyperg.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/inifcns_nstdsums.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/inifcns_orthopoly.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/inifcns_trans.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/inifcns_trig.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/inifcns_zeta.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/lst.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/matrix.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/mpoly-giac.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/mpoly-ginac.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/mpoly-singular.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/mpoly.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/mul.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/normal.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/numeric.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/operators.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/order.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/power.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/print.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/pseries.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/py_funcs.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/registrar.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/relational.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/remember.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/sum.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/symbol.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/templates.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/upoly-ginac.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/useries.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/utils.o build/temp.linux-x86_64-cpython-311/sage/symbolic/ginac/wildcard.o -L/usr/lib64 -lflint -lgmp -lSingular -lpolys -lfactory -lomalloc -lsingular_resources -lgsl -lm -lopenblas -o build/lib.linux-x86_64-cpython-311/sage/symbolic/expression.cpython-311-x86_64-linux-gnu.so -lpari

[sagelib-10.1]     error: command '/usr/bin/g++' failed with exit code 1
[sagelib-10.1]     error: subprocess-exited-with-error
[sagelib-10.1]
[sagelib-10.1]     × python setup.py develop did not run successfully.
[sagelib-10.1]     │ exit code: 1
[sagelib-10.1]     ╰─> See above for output.

[François Bissey]

Hi,

We need the build log. The last output is not always where the error
occurred. On most modern system there are several compilations done at
the same time. The last one printed is just the last one to finish.

François

> --
> You received this message because you are subscribed to the Google
> Groups "sage-devel" group.
> To unsubscribe from this group and stop receiving emails from it, send
> an email to sage-devel+...@googlegroups.com
> <mailto:sage-devel+...@googlegroups.com>.
> To view this discussion on the web visit
> https://groups.google.com/d/msgid/sage-devel/eb1e4a98-7882-4547-afc2-79757757e2a7n%40googlegroups.com <https://groups.google.com/d/msgid/sage-devel/eb1e4a98-7882-4547-afc2-79757757e2a7n%40googlegroups.com?utm_medium=email&utm_source=footer>.

[François Bissey]

From the log sent to me in a private email:
[sagelib-10.1] gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1

-DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall
-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3
-Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic
-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection
-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall
-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3
-Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic
-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection
-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall
-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3
-Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic
-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -g

-O2 -fPIC -Isage/cpython

-I/home/ayan/programs/sage-10.1/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/cysignals
-I/home/ayan/programs/sage-10.1/src
-I/home/ayan/programs/sage-10.1/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/numpy/core/include
-I/usr/include/python3.11
-I/home/ayan/programs/sage-10.1/local/var/lib/sage/venv-python3.11/include

-I/usr/include/python3.11 -c sage/stats/time_series.c -o
build/temp.linux-x86_64-cpython-311/sage/stats/time_series.o
[sagelib-10.1] /usr/bin/ld: ///usr/local/lib/libntl.a(ZZ.o):
relocation R_X86_64_32S against `.rodata' can not be used when making a
shared object; recompile with -fPIC
[sagelib-10.1] /usr/bin/ld: failed to set dynamic section sizes: bad
value
[sagelib-10.1] collect2: error: ld returned 1 exit status

We are looking at a "local" installation of NTL [not sage provided]
which does not have the right properties.
I would recommend uninstalling it and build the version shipped with sage.

François


On 27/10/23 20:15, Ayan Mahalanobis wrote:

[Dima Pasechnik]

It would be good to understand whether it's correctly configured, but
NTL is leaking into the build,
or that NTL was actually accepted by ./configure

Do you have top-level configure.log ?

> To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+...@googlegroups.com.
> To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/0e4d04dd-e62d-40f3-b4f0-5d7c8eb64bf3%40gmail.com.

[Ayan Mahalanobis]

Thanks to Francois, the problem is now resolved. I uninstalled the local NTL and then the installation went fine. Now once I reinstalled, all files are probably overwritten.

So, I cannot help with the log files.

Thanks and Regards,

Ayan

You received this message because you are subscribed to a topic in the Google Groups "sage-devel" group.
To unsubscribe from this topic, visit https://groups.google.com/d/topic/sage-devel/Yu-kILmiEPA/unsubscribe.
To unsubscribe from this group and all its topics, send an email to sage-devel+...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/CAAWYfq1ge1rmjgCJLFceajeoYqYYy6xHbtKfA-KgNR%2BrDvf52Q%40mail.gmail.com.

--

Ayan Mahalanobis