sage-4.3
William Stein
Merry Christmas! I have released sage-4.3, which is a massive
release with 230 tickets closed, which you can see listed here:
You can download the source code here:
http://sage.math.washington.edu/sage/src/
You should be able to upgrade with
sage -upgrade http://sagemath.org/packages/
I'm posting binaries for many systems (except Windows) here right now
(this will take some hours to finish):
http://sage.math.washington.edu/home/wstein/binaries
(Note that I found an OS X 10.5 build machine -- in Mike Rubinstein's
office :-) -- so this time we don't have to worry about that.)
-- William
--
William Stein
Associate Professor of Mathematics
University of Washington
http://wstein.org
Harald Schilly
that there is the metalink/torrent option:
$ sudo apt-get install aria2
# or any other metalink program that supports torrents
$ aria2c http://www.sagemath.org/mirror/src/meta/sage-4.3.tar.metalink
As long as somebody seeds, there is also http://www.sagemath.org/mirror/src/meta/sage-4.3.tar.torrent
, which is included in the metalink file.
H
Harald Schilly
> ... and since the sage server is rather slow, ...
Of course, mirrors are also there for you:
http://www.sagemath.org/download-source.html
H
mhampton
sage0.py, on an intel mac running 10.4.11:v
sage -t "devel/sage/sage/interfaces/sage0.py"
**********************************************************************
File "/Volumes/E/sage-4.3/devel/sage/sage/interfaces/sage0.py", line
512:
sage: half = reduce_load_element(s); half
Exception raised:
Traceback (most recent call last):
File "/Volumes/E/sage-4.3/local/bin/ncadoctest.py", line 1231,
in run_one_test
self.run_one_example(test, example, filename, compileflags)
File "/Volumes/E/sage-4.3/local/bin/sagedoctest.py", line 38, in
run_one_example
OrigDocTestRunner.run_one_example(self, test, example,
filename, compileflags)
File "/Volumes/E/sage-4.3/local/bin/ncadoctest.py", line 1172,
in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_24[4]>", line 1, in <module>
half = reduce_load_element(s); half###line 512:
sage: half = reduce_load_element(s); half
File "/Volumes/E/sage-4.3/local/lib/python/site-packages/sage/
misc/displayhook.py", line 174, in displayhook
print_obj(sys.stdout, obj)
File "/Volumes/E/sage-4.3/local/lib/python/site-packages/sage/
misc/displayhook.py", line 142, in print_obj
print >>out_stream, `obj`
File "/Volumes/E/sage-4.3/local/lib/python/site-packages/sage/
interfaces/expect.py", line 1673, in __repr__
s = s.replace(self._name, self.__dict__['__custom_name'])
KeyError: '__custom_name'
**********************************************************************
File "/Volumes/E/sage-4.3/devel/sage/sage/interfaces/sage0.py", line
544:
sage: sage0_version() == version()
Expected:
True
Got:
False
**********************************************************************
File "/Volumes/E/sage-4.3/devel/sage/sage/interfaces/sage0.py", line
174:
sage: print "ignore this"; sage0.cputime() # random output
Exception raised:
Traceback (most recent call last):
File "/Volumes/E/sage-4.3/local/bin/ncadoctest.py", line 1231,
in run_one_test
self.run_one_example(test, example, filename, compileflags)
File "/Volumes/E/sage-4.3/local/bin/sagedoctest.py", line 38, in
run_one_example
OrigDocTestRunner.run_one_example(self, test, example,
filename, compileflags)
File "/Volumes/E/sage-4.3/local/bin/ncadoctest.py", line 1172,
in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_3[2]>", line 1, in <module>
print "ignore this"; sage0.cputime() # random
output###line 174:
sage: print "ignore this"; sage0.cputime() # random output
File "/Volumes/E/sage-4.3/local/lib/python/site-packages/sage/
interfaces/sage0.py", line 185, in cputime
return float(s)
ValueError: empty string for float()
**********************************************************************
File "/Volumes/E/sage-4.3/devel/sage/sage/interfaces/sage0.py", line
176:
sage: sage0('factor(2^157-1)')
Expected:
852133201 * 60726444167 * 1654058017289 * 2134387368610417
Got:
<BLANKLINE>
**********************************************************************
File "/Volumes/E/sage-4.3/devel/sage/sage/interfaces/sage0.py", line
178:
sage: print "ignore this"; sage0.cputime() # random output
Exception raised:
Traceback (most recent call last):
File "/Volumes/E/sage-4.3/local/bin/ncadoctest.py", line 1231,
in run_one_test
self.run_one_example(test, example, filename, compileflags)
File "/Volumes/E/sage-4.3/local/bin/sagedoctest.py", line 38, in
run_one_example
OrigDocTestRunner.run_one_example(self, test, example,
filename, compileflags)
File "/Volumes/E/sage-4.3/local/bin/ncadoctest.py", line 1172,
in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_3[4]>", line 1, in <module>
print "ignore this"; sage0.cputime() # random
output###line 178:
sage: print "ignore this"; sage0.cputime() # random output
File "/Volumes/E/sage-4.3/local/lib/python/site-packages/sage/
interfaces/sage0.py", line 185, in cputime
return float(s)
ValueError: invalid literal for float(): 852133201 * 60726444167 *
1654058017289 * 2134387368610417
**********************************************************************
File "/Volumes/E/sage-4.3/devel/sage/sage/interfaces/sage0.py", line
192:
sage: len(t) > 100
Exception raised:
Traceback (most recent call last):
File "/Volumes/E/sage-4.3/local/bin/ncadoctest.py", line 1231,
in run_one_test
self.run_one_example(test, example, filename, compileflags)
File "/Volumes/E/sage-4.3/local/bin/sagedoctest.py", line 38, in
run_one_example
OrigDocTestRunner.run_one_example(self, test, example,
filename, compileflags)
File "/Volumes/E/sage-4.3/local/bin/ncadoctest.py", line 1172,
in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_4[3]>", line 1, in <module>
len(t) > Integer(100)###line 192:
sage: len(t) > 100
TypeError: object of type 'float' has no len()
**********************************************************************
File "/Volumes/E/sage-4.3/devel/sage/sage/interfaces/sage0.py", line
194:
sage: 'gcd' in t
Exception raised:
Traceback (most recent call last):
File "/Volumes/E/sage-4.3/local/bin/ncadoctest.py", line 1231,
in run_one_test
self.run_one_example(test, example, filename, compileflags)
File "/Volumes/E/sage-4.3/local/bin/sagedoctest.py", line 38, in
run_one_example
OrigDocTestRunner.run_one_example(self, test, example,
filename, compileflags)
File "/Volumes/E/sage-4.3/local/bin/ncadoctest.py", line 1172,
in run_one_example
compileflags, 1) in test.globs
File "<doctest __main__.example_4[4]>", line 1, in <module>
'gcd' in t###line 194:
sage: 'gcd' in t
TypeError: argument of type 'float' is not iterable
**********************************************************************
4 items had failures:
1 of 6 in __main__.example_24
1 of 4 in __main__.example_26
3 of 5 in __main__.example_3
2 of 5 in __main__.example_4
***Test Failed*** 7 failures.
-Marshall
On Dec 25, 4:41 am, William Stein <wst...@gmail.com> wrote:
> Hi,
>
> Merry Christmas! I have released sage-4.3, which is a massive
> release with 230 tickets closed, which you can see listed here:
>
> http://trac.sagemath.org/sage_trac/query?status=closed&group=componen...
>
> You can download the source code here:
>
> http://sage.math.washington.edu/sage/src/
>
> You should be able to upgrade with
>
> sage -upgradehttp://sagemath.org/packages/
pipedream
On Dec 25, 12:41 pm, William Stein <wst...@gmail.com> wrote:
> I have released sage-4.3, which is a massive
> release with 230 tickets closed, which you can see listed here:
> http://trac.sagemath.org/sage_trac/query?status=closed&group=componen...
On Ubuntu 9.04 (jaunty) 64bit version up to date with backports, I
have installed
from scratch from source 4.3 like so:
make
cp /usr/local/src/sage-4.3/sage /usr/local/bin/
sed -ie 's#="\.\.\.\.\."#="/usr/local/src/sage-4.3/"#' /usr/local/bin/
sage
rm /usr/local/bin/sagee
chmod a+r -R /usr/local/src/sage-4.3/
chown -R root.root /usr/local/src/sage-4.3/
echo "exit" | sage
make test
...
All tests passed!
Total time for all tests: 3456.5 seconds
I installed optional SPKGes:
biopython-1.53.p0.spkg
database_cremona_ellcurve-20071019.p0.spkg
database_gap-4.4.10.spkg
database_jones_numfield-v4.spkg
database_kohel-20060803.spkg
database_odlyzko_zeta.spkg
database_sloane_oeis-2005-12.spkg
database_stein_watkins_mini.spkg
database_symbolic_data-20070206.spkg
gap_packages-4.4.10_6.spkg
jsmath-image-fonts-1.4.p2.spkg
sagetex-2.2.1.spkg
stein-watkins-ecdb.spkg
1.
The (pre) existance of this directory
/usr/local/src/sage-4.3/data/stein-watkins-ecdb/
clashed with the installation of that spkg, giving an error
and failing. I removed it and it succeeds thereafter.
The associated README claims that /usr/local/src/sage-4.3/spkg/build
would contain huge files to be deleted. It seems however the install
of this SPKG deleted that directory by itself. In there is only:
0 root@muizenberg:/usr/local/src/sage-4.3/spkg/build#ls
bzip2-1.0.5 md5sum.check old prereq-0.5
Uh, does that mean bzip2 and prereq-0.5 failed to install properly??
2.
The file
http://www.sagemath.org/mirror/src/README.txt
claims that the html documentation is all built during the install.
Yet this produces a lot of output and seemed to add files???
cd /usr/local/src/sage-4.3/devel/
sage -docbuild all html
3.
# to allow users to run sage -t in a system-wide install # fixed in
4.3?
#mkdir /usr/local/src/sage-4.3/tmp/tmp
#chmod 1777 /usr/local/src/sage-4.3/tmp/tmp
Above no longer seems necessary. Correct?
4.
I recently installed the jsmath SPKG on 4.2 so that students could
print
from SAGE. The upgrade of 4.2 to 4.3 and a minor upgrade in jsmath
happened at the same time. Now when I open a worksheet in the
notebook, or when I
click File Print on a worksheet, each time I get:
"It looks like jsMath failed to set up properly (error code -7). I
will try to keep going, but it could get ugly."
So I put
show(integrate(x^2,x))
and the answer displayed prettily. I clicked File Print in the
notebook and
I got the jsmath error, as soon as I closed the jsmath error the print
preview window
changed from \frac{1}{3} to proper pretty display. Then when I printed
that preview window
with firefox File Print, it printed in pretty display. Very annoying
to click through all the errors though.
regards,
Jan
Johann "Myrkraverk" Oskarsson
On Fri, Dec 25, 2009 at 10:41 AM, William Stein <wst...@gmail.com> wrote:
> Hi,
>
> Merry Christmas! I have released sage-4.3, which is a massive
> release with 230 tickets closed,
> You can download the source code here:
>
> http://sage.math.washington.edu/sage/src/
>
> I'm posting binaries for many systems (except Windows) here right now
> (this will take some hours to finish):
>
> http://sage.math.washington.edu/home/wstein/binaries
Is it just me, or are these links broken?
Johann
William Stein
The root filesystem on sage.math.washington.edu has suddenly (?) been
mounted read online. For all I know the root filesystem hard drive
is hosed. This would of course prevent the web page from working.
In the meantime, here is another link to the source
http://boxen.math.washington.edu/home/wstein/farm/src/sage-4.3.tar
and the binaries:
http://boxen.math.washington.edu/home/wstein/binaries/
William
William
Harald Schilly
<joh...@myrkraverk.com> wrote:
> > http://sage.math.washington.edu/home/wstein/binaries
>
> Is it just me, or are these links broken?
Please use a mirror, main server is slow ;)
http://sage.scipy.org/sage/index.html
http://www.cecm.sfu.ca/sage/index.html
http://modular.fas.harvard.edu/sage/index.html
H
Minh Nguyen
For the record, here's a release note for Sage 4.3:
Sage 4.3 was released on December 24, 2009. It is available at
http://www.sagemath.org/download.html
* About Sage (http://www.sagemath.org)
Sage is developed by volunteers and combines over 90 open source packages.
It is available for download from www.sagemath.org and its mirrors in
source or binary form. If you have any questions and/or problems,
please report them to the Google groups sage-devel or sage-support.
You can also drop by in #sage-devel on freenode.
---------------------------------------------------------------------
The following 62 people contributed to this release. Of those, 11 made
their first contribution to Sage:
* Adam Webb
* Alex Ghitza
* Anders Jonsson [first contribution]
* Andrew Hou [first contribution]
* Anne Schilling
* Bill Cauchois
* Brant Jones
* Burcin Erocal
* Craig Citro
* D. Benjamin Antieau
* Dag Sverre Seljebotn
* Dan Bump
* Dan Drake
* David Green
* David Joyner
* David Kirkby
* David Kohel
* David Roe
* Florent Hivert
* Francis Clarke
* Franco Saliola
* Georg S. Weber
* Golam Mortuza Hossain
* Håkan Granath [first contribution]
* Ivan Andrus
* Jaap Spies
* Jason Bandlow
* Jason Grout
* Javier Vengoroso [first contribution]
* John Cremona
* John Palmieri
* Karl-Dieter Crisman
* Kiran Kedlaya
* Kwankyu Lee
* Luis Felipe Tabera [first contribution]
* Marshall Hampton
* Martin Albrecht
* Martin Raum [first contribution]
* Michael Brickenstein
* Mike Hansen
* Minh Van Nguyen
* Mitesh Patel
* Nathann Cohen
* Nicolas Borie
* Nicolas M. Thiéry
* Nils Bruin
* Qiang Wang [first contribution]
* Ralf Hemmecke [first contribution]
* Rob Beezer
* Robert Bradshaw
* Robert Marik [first contribution]
* Robert Miller
* Sébastien Labbé
* Simon King
* Soledad Villar [first contribution]
* Steve Pon [first contribution]
* Tim Abbott
* Tim Dumol
* Wilfried Huss
* Willem Jan Palenstijn
* William Stein
* Yann Laigle-Chapuy
Release Managers
* Mike Hansen
* William Stein
* Major features, new spkgs and bug fixes
* Many improvements in the build system thanks.
* Major new features in the Sage notebook server.
* Numerous new features in the combinatorics module.
* Many improvements in the graph theory module, both the backend
implementation and new features.
* 15 package updates
For all the details of what else changed in Sage 4.3, please see the
release tour on the Sage wiki at
http://wiki.sagemath.org/ReleaseTours/sage-4.3
* Bug Statistics
We closed 237 tickets. For details see
http://trac.sagemath.org/sage_trac/milestone/sage-4.3
or check out the closed ticket section at the end of the announcement.
* Doctesting Coverage
In Sage 4.2.1, the overall weighted coverage score was 79.8% and the
total number of functions was 22,835. For Sage 4.3, we increase doctest
coverage by 1% with 928 new functions. The overall weighted coverage
score is now 80.8% with a total of 23,763 functions.
* Known issues
* Arch Linux is not yet supported. Compiling Sage from source on Arch
Linux requires some manual intervention.
* There is yet no support for building Sage on openSUSE 11.2. The
compilation fails at the point when building the sqlite spkg.
* Closed Tickets
#386: Enhance "attach <file>" in the notebook [Fixed via sagenb spkg]
#485: SAGElite -- release a first version of SAGE Lite [Fixed via the
new sage-nb spkg]
#855: lists of optional and experimental packages should have
descriptions [Fixed via update to Sage website]
#2783: notebook -- ocassional "crap" in output like this print
"\x01r\x01e580" [Fixed in sagenb spkg]
#3464: notebook server error on sage.math (port detection problem)
[Fixed in sagenb spkg]
#3772: Gnuplot.py uses IPython/Python 2.6 keyword with [Fixed by #7187]
#3802: notebook -- run server locally and logout then go to local
server again and get KeyError in server log and internal server error
[Fixed by sagenb spkg]
#4429: notebook -- wrong display of message " Please enable cookies
and try again." [Fixed by sagenb spkg]
#4451: notebook - cursor keys do not navigate around text cells [Fixed
by sagenb spkg]
#5686: William Stein: mpi4py is very outdated [Reviewed by Soroosh Yazdani]
#6076: Allow to redefine the python symbol in the Notebook [Confirmed as fixed]
#6530: methods not shown in documentation search [Confirmed as fixed]
#6815: Restarting worksheet doesn't enable typesetting even when
"Typeset" box is checked [Confirmed as fixed]
#6843: Willem Jan Palenstijn: Permission problem when uploading
worksheet [Reviewed by William Stein; fixed in sagenb]
#6913: __eq__ methods for the classes in numerical.MIP [Fixed due to #7270]
#7037: libm4ri thinks the C compiler is broken [Fixed by #7375]
#7142: We must check if the version of 'tar' found is gnu tar [Fixed by #7352]
#7143: We must check if the version of 'make' found is gnu 'make'
[Fixed by #7352]
#7156: prereq-0.4 has a minor portability issue [Fixed by #7352]
#7171: HP-UX failure of libm4ri 20090617 as it attempts to find L1
cache size [Fixed by #7375]
#7181: We must ensure we have GNU make, not HP-UX or Solaris 'make'
[Fixed by #7352]
#7182: HP-UX failure of gfan-0.3.p4 but easier to ensure we have GNU
make [Fixed by #7352]
#7187: Adam Webb: update optional package Gnuplot.py to 1.8 [Reviewed
by Mike Hansen]
#7195: Simon King, David Green: Cohomology rings of finite p-groups:
new version [Reviewed by David Joyner]
#7203: prereq-0.4 does not exit if CC is not gcc, but CXX is g++
[Fixed by #7352]
#7268: Nathann Cohen: GLPK: named constraints and variables, export
functions [Reviewed by Martin Albrecht]
#7333: Nathann Cohen: CBC spkg updated because of modifications in
sage.numerical.mip [Reviewed by Martin Albrecht]
#7390: Mitesh Patel: Generate a HTML report for SageNB tests [Reviewed
by Tim Dumol]
#7402: Tim Dumol: SageNB -- Use `pkg_resources` to locate `DATA`
directory [Reviewed by Mitesh Patel]
#7428: Mitesh Patel: worksheets listed on published list only after
they are republished, but not after initial publication [Reviewed by
Tim Dumol]
#7444: Mitesh Patel: Broken: searching published worksheets after
publishing a worksheet for the first time [Reviewed by Tim Dumol]
#7451: Setting SAGE_FAT_BINARY causes internal compiler error building
pari [Fixed by #7471]
#7464: David Kirkby: Remove '-v' option from 'cp' command (GNUism) in
database_cremona_ellcurve
#7467: Tim Dumol: Make SageNB use `setuptools` instead of `distutils`
[Reviewed by Mitesh Patel]
#7470: Tim Dumol: SageNB -- Minor docstring fixes for `js.py`
[Reviewed by John Palmieri]
#7495: William Stein: notebook: fix massive security vulnerability and
get rid of all possible "internal server errors" when doing "Data -->
Upload or attach file" [Reviewed by Mitesh Patel]
#7584: Pari spkg: remove junk file pari-2.3.3.p5.spkg
#7693: the lrs SPKG.txt is not very useful
#7726: Marshall Hampton: Upgrade biopython package to 1.53 [Reviewed
by Adam Webb]
#7737: spkg list has the entire description as a link
Merged in the sagenb:
#1466: Tim Dumol: improve the "click to the left" aspect of the
notebook [Adam Webb; merged in sagenb-0.4.4]
#3619: William Stein: notebook -- record date & time each user logs in
[Reviewed by Tim Dumol]
#3733: William Stein: notebook -- add something to reference manual
about user-customizable css (easy ticket) [Reviewed by Tim Dumol;
merged in sagenb-0.4.6]
#3849: William Stein: notebook --get rid of internal server errors
when uploading a worksheet [Reviewed by Mitesh Patel; merged in
sagenb]
#4714: Mitesh Patel: use easy/load.js when loading jsmath in the
notebook [William Stein; merged in sagenb-0.4.6]
#5100: Tim Dumol: worksheets: can't empty the trash (safari only?)
[Reviewed by John Palmieri, William Stein; merged in sage-0.4.6]
#7267: Mitesh Patel: Add a compact color picker to SageNB [Reviewed by
William Stein; merged in sagenb-0.4.6]
#7376: Mitesh Patel: searching published worksheets does not work to
just search for username [Reviewed by William Stein; merged in
sagenb-0.4.6]
#7433: Tim Dumol: notebook: changing title of worksheet changes title
of corresponding published worksheet [Reviewed by William Stein;
merged in sagenb-0.4.6]
#7447: Mitesh Patel: SageNB version and install date / time [Reviewed
by William Stein; merged in sagenb-0.4.6]
#7455: Tim Dumol: SageNB - Searching on Log page does not work
[Reviewed by William Stein; merged in sagenb-0.4.6]
#7611: Tim Dumol: Minor ReST improvements for the notebook object
documentation [Reviewed by William Stein; merged in sagenb-0.4.6]
#7627: Mitesh Patel: Settings page (for converted notebook?) gives
errors [Reviewed by William Stein; merged in sagenb-0.4.6]
#7628: Mitesh Patel: Error on account creation still creates (half of)
an account [Reviewed by William Stein; merged in sagenb-0.4.7]
Merged in Sage 4.3.rc2:
#7677: Mike Hansen: sage-4.3.rc0: powerpc g5 doctest blockers
#7755: Mitesh Patel: Auto-detect SageNB install path when building
documentation [Reviewed by John Palmieri]
#7757: Upgrade to notebook spkg to sagenb-0.4.8
#7758: William Stein: doctest failure on OS X 10.5 intel due to
randomization [Reviewed by Nathann Cohen]
Merged in Sage 4.3.rc1:
#3684: Martin Albrecht: linear algebra -- optimize computation of
kernel for matrices over GF(2) [Reviewed by Mike Hansen]
#5098: Yann Laigle-Chapuy: Pollard rho algorithm for generic discrete
logarithm [Reviewed by Martin Raum]
#5112: Yann Laigle-Chapuy: generic Pollard lambda algorithm [Reviewed
by Martin Raum]
#6522: Karl-Dieter Crisman: replace .copy() with .__copy__() in
graphs/graph.py [Reviewed by Nathann Cohen, Robert Miller]
#6764: Nathann Cohen: Independent Set of Representatives [Reviewed by
Robert Miller]
#6962: Nathann Cohen: Feedback vertex set, Feedback arc set [Reviewed
by Robert Miller]
#7243: Tim Abbott, Mike Hansen: bashisms in
extcode-4.1.2/pari/dokchitser/testall [Reviewed by David Kirkby]
#7291: Nathann Cohen: Max Cut [Reviewed by Robert Miller]
#7294: Nathann Cohen: Degree constrained subgraph [Reviewed by Robert Miller]
#7314: Nathann Cohen: Average distance, Wiener Index, Szeged index
[Reviewed by Robert Miller]
#7358: Nathann Cohen: Strong orientations of 2-connected graphs
[Reviewed by Robert Miller]
#7365: Nathann Cohen: Petersen's 2-factor theorem [Reviewed by Robert Miller]
#7400: Florent Hivert: Element does not copy its __dict__ when copied,
ElementWrapper does not copy the wrapped values when copied [Reviewed
by Nicolas M. Thiéry]
#7452: Ivan Andrus: Make it easier to diagnose build problems by
allowing copy-paste [Reviewed by Minh Van Nguyen, Mike Hansen]
#7491: Robert Marik: solve(x==x,x) fails [Reviewed by Karl-Dieter Crisman]
#7527: Nathann Cohen: include graph_coloring in the reference manual
[Reviewed by Minh Van Nguyen]
#7528: Nathann Cohen: Orientation of a graph with minimized out-degree
[Reviewed by Robert Miller]
#7530: Francis Clarke: corrects simple Laurent-polynomial bug
[Reviewed by John Cremona]
#7534: Tim Dumol: Add a deprecation message at the top of most
sage.server.* files [Reviewed by Mike Hansen]
#7536: Nathann Cohen: Toroidal Grid in graph_generators [Reviewed by
Robert Miller]
#7541: Nathann Cohen: LexBFS and is_chordal [Reviewed by Robert Miller]
#7592: Nathann Cohen: Flow method using LP [Reviewed by Robert Miller]
#7593: Nathann Cohen: Matching using LP [Reviewed by David Joyner]
#7594: Nathann Cohen: Dominating set and Independent dominating Set
[Reviewed by Robert Miller]
#7598: William Stein: NumberField embedding slightly off [Reviewed by
Mike Hansen, John Cremona]
#7599: Nathann Cohen: vertex_cut and edge_cut ( minimum s-t cut )
[Reviewed by Robert Miller]
#7600: Nathann Cohen: Vertex cover [Reviewed by Robert Miller]
#7601: Nathann Cohen: Graph.edge_connectivity [Reviewed by Robert Miller]
#7605: Nathann Cohen: Graph.vertex_connectivity [Reviewed by Robert Miller]
#7614: William Stein: change plot to use fast_callable [Reviewed by Jason Grout]
#7622: Karl-Dieter Crisman: Fix OSX plist copyright situation
[Reviewed by Minh Van Nguyen]
#7637: Nathann Cohen: Default dictionary in MixedIntegerLinearProgram
[Reviewed by Martin Albrecht]
#7640: Nathann Cohen: shortest_path should not use NetworkX if the
underlying graph is a c_graph [Reviewed by Robert Miller]
#7651: Robert Miller: c_graph backends should include a "reversed"
copy for digraphs in the sparse case [Reviewed by Nathann Cohen]
#7652: Nathann Cohen: Adds Linear Programming to the Constructions
document [Reviewed by Minh Van Nguyen]
#7658: Minh Van Nguyen: installation guide still refers to VMWare, not
VirtualBox [Reviewed by Dan Drake]
#7659: Burcin Erocal: fix tests in documentation after pynac printing
changes [Reviewed by Alex Ghitza]
#7673: Nathann Cohen: implement Dijkstra's algorithm for C graphs
[Reviewed by Robert Miller, Yann Laigle-Chapuy]
#7674: Robert Miller: fix bug in c_graph backends in_degree and
out_degree [Reviewed by Nathann Cohen]
#7679: Minh Van Nguyen: constructions doc: Python functional
programming for mathematicians [Reviewed by John Cremona]
#7680: Robert Miller: disable long random tests in partn_ref [Reviewed
by Mike Hansen]
#7683: Mike Hansen: sphinx reference manual documentation has a major
issue: in some cases the input parameters to functions are completely
omitted causing great confusion! [Reviewed by John Palmieri]
#7684: William Stein: Create a doctest that runs only on sage.math and
ensures that startuptime is < 1.5 second [Reviewed by Robert Bradshaw]
#7691: William Stein: Expect interfaces should not timeout [Reviewed
by Mike Hansen]
#7705: Nathann Cohen: graphs: replace the worldmap sobj by some code
(or something else that is transparent) [Reviewed by Robert Miller,
William Stein]
#7707: William Stein: change picklejar doctest to be more robust
[Reviewed by Mike Hansen]
#7715: Martin Albrecht: implement vectors mod 2 as M4RI matrices with
one row [Reviewed by Mike Hansen]
#7718: David Roe: Segfault in coercion code [Reviewed by Robert Bradshaw]
#7721: Nathann Cohen: digraphs.CircuitGraph [Reviewed by Robert Miller]
#7734: Nathann Cohen: edge_coloring loops forever when GLPK is not
installed [Reviewed by Robert Miller]
#7735: Luis Felipe Tabera: incorrect sage exponentiation in
interreduced_basis '^' vs '**' [Reviewed by John Cremona]
#7747: John Palmieri, Burcin Erocal: miscellaneous documentation fixes
[Reviewed by Minh Van Nguyen]
Merged in Sage 4.3.rc0:
#1918: Bill Cauchois: Matrices that are printed are not aligned
[Reviewed by Florent Hivert]
#2942: Tim Dumol: new command line options: sage -n and sage -bn
[Reviewed by William Stein]
#2943: Kiran Kedlaya: bug with power series and/or p-adics [Reviewed
by Mike Hansen]
#5261: Ivan Andrus: Make it so OS X app bundles can have space in the
name [Reviewed by Karl-Dieter Crisman]
#6523: Burcin Erocal: .is_zero() method raises error for symbolic
expression involving derivative [Reviewed by Mike Hansen]
#6854: Simon King: Tab completion for elements of
InfinitePolynomialRing [Reviewed by Martin Albrecht]
#7164: David Kirkby: readline-6.0 fails to build on HP-UX 11i
(PA-RISC) [Reviewed by Martin Albrecht]
#7184: Anders Jonsson, Nathann Cohen: Implement counting of spanning
trees for graphs and digraphs [Reviewed by Mike Hansen]
#7264: Burcin Erocal: segfault while substituting powers of exp
[Reviewed by Karl-Dieter Crisman, Mike Hansen]
#7272: Robert Bradshaw: Upgrade to Cython 0.12 [Reviewed by Mike Hansen]
#7381: Mike Hansen: Coercion of HyperellipticCurve over pAdicField to
an extension [Reviewed by Nathann Cohen]
#7406: Burcin Erocal: bug in conversion powers in to LaTeX [Reviewed
by Karl-Dieter Crisman]
#7456: Alex Ghitza: developer guide: discuss proper ReST markup for
citations [Reviewed by Nathann Cohen]
#7466: John Palmieri: 21 warnings when building the HTML version of
the reference manual, Sage 4.2.1 [Reviewed by Minh Van Nguyen]
#7471: William Stein: update the patches in the mpir spkg -- update to
mpir 1.2.2 vanilla [Reviewed by Mike Hansen]
#7473: Mitesh Patel: Sphinx hangs when making a clone [Reviewed by
John Palmieri]
#7508: Burcin Erocal: hash collisions for derivatives of symbolic
functions - act 3 [Reviewed by Karl-Dieter Crisman]
#7517: William Stein: improve documentation of xgcd command [Reviewed
by Alex Ghitza]
#7546: Ivan Andrus: Update Mac OS X app and icon [Reviewed by
Karl-Dieter Crisman]
#7561: Nathann Cohen: Replaces InfinitePolynomialRing in
MixedIntegerLinearProgram by 'var', and bug fixing in constraints()
[Reviewed by Martin Albrecht]
#7562: Håkan Granath: Another (new?) binomial bug [Reviewed by
Karl-Dieter Crisman]
#7591: Martin Albrecht: Boolean Polynomial Ring coercion broken
[Reviewed by Burcin Erocal]
#7603: Burcin Erocal: add methods to query representation of symbolic
expressions [Reviewed by Mike Hansen]
#7604: Soledad Villar, Francis Clarke: Bug in continued fractions
module (contfrac) [Reviewed by Mike Hansen]
#7606: Minh Van Nguyen: images not picked up when making source
releases of Sage 4.3.alpha0 and 4.3.alpha1 [Reviewed by Mike Hansen]
#7607: Minh Van Nguyen: ignore uncommitted files under the script
repository [Reviewed by Mike Hansen]
#7609: Burcin Erocal: numerical noise in doctests after pynac update
[Reviewed by Karl-Dieter Crisman]
#7610: Tim Dumol: `readline-6.0` causes "undefined symbol: PC" errors
on Arch Linux [Reviewed by Mike Hansen]
#7615: Karl-Dieter Crisman: Fix arctan2 documentation [Reviewed by
Nathann Cohen]
#7625: William Stein: include new version of sagenb (0.4.6) [Reviewed
by Mitesh Patel, Tim Dumol]
#7638: Dag Sverre Seljebotn: Cannot create big matrix on 64-bit system
[Reviewed by William Stein]
Merged in Sage 4.3.alpha1:
#3587: Wilfried Huss: calculus -- wrap maxima's symbolic summation
[Reviewed by Burcin Erocal, Mike Hansen, Karl-Dieter Crisman, William
Stein]
#4982: Alex Ghitza, Martin Albrecht: consolidate shifts in
polynomial_template [Reviewed by Alex Ghitza, Martin Albrecht]
#5338: William Stein: Sage 3.2.2: speed regression/infinite loop for
"K.<b> = QQ[a]" [Reviewed by Robert Bradshaw]
#6099: D. Benjamin Antieau: morphisms of simplicial complexes and the
associated chain complex morphisms [Reviewed by John Palmieri]
#6286: Burcin Erocal: Inconsistence typesettings of PrimitiveFunctions
and SFunctions [Reviewed by Mike Hansen]
#6479: Robert Marik: desolve for 2nd order ODE with initial condition
gives wrong answer [Reviewed by David Joyner]
#6496: Luis Felipe Tabera: functions numerator() and denominator() for
multivariate polynomials [Reviewed by Robert Bradshaw, Florent Hivert]
#6653: Mitesh Patel: Add --no-pdf-links option for doc/html/index.html
builder [Reviewed by John Palmieri]
#6679: Nathann Cohen: Vertex Coloring, Edge Coloring [Reviewed by
Karl-Dieter Crisman, Minh Van Nguyen]
#6813: Nathann Cohen: The whole world in a graph [Reviewed by Adam Webb]
#7116: John Cremona: Potential bug in elliptic curve pairing code
[Reviewed by Robert Bradshaw]
#7157: Nathann Cohen: neighbors_out/in instead of
predecessor/successor in DiGraph [Reviewed by Florent Hivert, Mike
Hansen]
#7194: Michael Brickenstein: extended singular functions interface
[Reviewed by Martin Albrecht, Burcin Erocal]
#7197: Andrew Hou: basic statistics functions [Reviewed by William Stein]
#7260: Francis Clarke: Inverse mod number field ideals: deal with
several remaining problems [Reviewed by John Cremona]
#7270: Nathann Cohen: numerical.MIP: named constraints and variables,
methods, structure, etc [Reviewed by Martin Albrecht]
#7283: John H. Palmieri: typo in reference manual [Reviewed by Robert Bradshaw]
#7287: Nils Bruin, Mike Hansen: Update Maxima spkg to build ECL
library [Reviewed by Karl-Dieter Crisman, Minh Van Nguyen]
#7351: Martin Albrecht: optimize import of singular.py [Reviewed by
Robert Bradshaw]
#7356: Robert Bradshaw: fixed latex representation for floats
[Reviewed by Robert Marik]
#7364: Nathann Cohen: Eulerian orientation of a graph [Reviewed by
Florent Hivert]
#7375: Martin Albrecht: upgrade M4RI to newest upstream release
[Reviewed by David Kirkby]
#7386: Nathann Cohen: Docstrings for graphs_generators.CubeGraph
[Reviewed by Mike Hansen]
#7405: Sébastien Labbé: Change the print of predefined words to the
default behavior [Reviewed by Florent Hivert]
#7409: Florent Hivert: Partitions(n).random_element() is extremely
slow [Reviewed by Mike Hansen]
#7457: Alex Ghitza: improvements to quotient_ring.py [Reviewed by John Palmieri]
#7461: Robert Miller: Long doctests in
partn_ref/refinement_matrices.pyx frequently timing out [Reviewed by
Mike Hansen]
#7487: Nathann Cohen: Random Interval Graphs [Reviewed by Mike Hansen]
#7490: Burcin Erocal: refactor symbolic functions [Reviewed by Mike Hansen]
#7498: Robert Bradshaw, Mike Hansen: Do *not* import matplotlib at
sage startup [Reviewed by Florent Hivert, Mike Hansen]
#7504: William Stein: Magma booleans don't evaluate correctly in
boolean contexts [Reviewed by Kiran Kedlaya]
#7510: Florent Hivert: is_finite method in categories (was Primes is
missing is_finite) [Reviewed by Mike Hansen]
#7515: Florent Hivert: Improved deprecation and renaming of function
and methods [Reviewed by Nathann Cohen]
#7519: Sébastien Labbé: Allowing the choice of word datatype for
images under WordMorphism [Reviewed by Franco Saliola]
#7525: John H. Palmieri: developer's guide: add information about
editing python files in the sage library [Reviewed by Minh Van Nguyen]
#7526: Yann Laigle-Chapuy: polynomial_template should avoid
unnecessary coercions [Reviewed by Martin Albrecht]
#7531: Martin Albrecht: Python interface to M4RI's LQUP function
[Reviewed by Yann Laigle-Chapuy]
#7533: Rob Beezer: Implement distance graphs [Reviewed by Nathann Cohen]
#7544: Minh Van Nguyen: downloading packages with sage-spkg [Reviewed
by Mike Hansen]
#7547: Yann Laigle-Chapuy: improve has_multiple_edges [Reviewed by
Robert Miller]
#7553: Minh Van Nguyen, William Stein: document exactly where
SAGE_FORTRAN is used [Reviewed by David Kirkby, Mike Hansen]
#7556: William Stein: change default rounding behavior for QQ to
'away' [Reviewed by Mike Hansen]
#7564: Minh Van Nguyen: graph theory: degree sequence function
[Reviewed by Karl-Dieter Crisman, Nathann Cohen]
#7565: Minh Van Nguyen: README.txt: enhance instructions on installing
binary distribution [Reviewed by Mike Hansen]
#7567: William Cauchois: Fix typo in sage -advanced help text
[Reviewed by Francis Clarke]
#7571: Yann Laigle-Chapuy: use more dicts in graph.py [Reviewed by
Robert Miller]
#7573: Martin Albrecht: Sage crashes if insufficient data is provided
for MIP [Reviewed by Nathann Cohen]
#7578: Simon King: Slowness of InfinitePolynomialRing basic arithmetic
[Reviewed by Martin Albrecht]
#7581: Martin Albrecht: use prCopyR to coerce multivariate polynomials
in the simple case [Reviewed by Simon King]
#7583: Minh Van Nguyen: typos in sage.numerical.optimize [Reviewed by
Mike Hansen]
#7587: Yann Laigle-Chapuy: improve multi_polynomial_libsingular
exponent method [Reviewed by Simon King]
Merged in Sage 4.3.alpha0:
- Show quoted text -
#1163: Karl-Dieter Crisman: make assume behave more consistently and
catch inconsistent assumptions [Reviewed by Jason Grout, Robert Marik]
#3663: Anne Schilling, Brant Jones: add support for affine crystals
[Reviewed by Dan Bump]
#4326: Nicolas M. Thiéry, with help from Anne Schilling, Daniel Bump,
Nicolas Borie, Qiang Wang, Steve Pon: Root systems improvements
[Reviewed by Daniel Bump, Mike Hansen]
#5480: Alex Ghitza: R.quotient_by_principal_ideal() is
self-contradictory [Reviewed by Mike Hansen]
#5482: Alex Ghitza: Quotient ring can be created without generator
names [Reviewed by Mike Hansen]
#5794: Dan Bump: exceptional and reducible type branching rules
[Reviewed by Brant Jones]
#5891: Nicolas M. Thiéry: Categories for the working mathematics
programmer [Reviewed by Robert Bradshaw, Craig Citro, Florent Hivert,
David Kohel, David Roe, Anne Schilling, William Stein, Javier
Vengoroso]
#6136: Nicolas M. Thiéry: (Combinatorial) Free modules: cleanup,
abstraction into categories, and functorial constructions [Reviewed by
Florent Hivert]
#6137: Nicolas M. Thiéry: Symmetric functions: refactoring to use
coercions, categories, unique rep, and Hopf algebra framework
[Reviewed by Jason Bandlow]
#6138: Nicolas M. Thiéry: SymmetricGroupAlgebra: updates w.r.t.
categories and free modules [Reviewed by Florent Hivert]
#6318: Adam Webb: optional doctest failure -- axiom interface --
something doesn't work [Reviewed by Mike Hansen]
#6354: Nicolas M. Thiéry: Advertise and improve sage -fixdoctest
[Reviewed by Mike Hansen]
#6517: Adam Webb, Ralf Hemmecke: FriCAS X.Y.Z [Reviewed by Jaap Spies,
Adam Webb, Mike Hansen ]
#6669: Martin Raum: Homomorphisms from matrix groups don't have to
have matrix groups as codomain [Reviewed by Robert Bradshaw]
#6760: Robert Bradshaw: error in quaternion algebra ideal basis
[Reviewed by Alex Ghitza]
#6803: Golam Mortuza Hossain: Implement symbolic Kronecker delta and
also make current signum (sgn) symbolic [Reviewed by Karl-Dieter
Crisman]
#7023: Robert Bradshaw: Upgrade to Cython 0.11.3 [Reviewed by Mike Hansen]
#7036: David Kirkby: rubiks ignores CXX and uses g++ even if CXX is
Sun compiler [Reviewed by Mike Hansen]
#7190: Nathann Cohen: French translation: A Tour of Sage [Reviewed by
Dan Drake, Mike Hansen]
#7208: Florent Hivert: Refactorisation of families [Reviewed by
Nicolas M. Thiéry]
#7352: David Kirkby: Update prereq to version 0.5 [Reviewed by Mike Hansen]
#7353: Dan Drake: French "Tour of Sage" should use Sphinx's French
localization [Reviewed by Mike Hansen]
#7355: Tim Dumol: Allow sage -i/-f to install packages without stating
version number [Reviewed by Dan Drake]
#7371: Alex Ghitza: rename quotient_group() to quotient() in
groups/perm_gps/permgroup.py [Reviewed by Mike Hansen]
#7395: Florent Hivert: The enumerated set of non negative integers
[Reviewed by Nicolas M. Thiéry]
#7396: Florent Hivert: Disjoint unions of enumerated sets [Reviewed by
Nicolas M. Thiéry]
#7397: Florent Hivert: Updated Primes to the category system [Reviewed
by Nicolas M. Thiéry]
#7403: Florent Hivert: adds FiniteEnumeratedSet [Reviewed by Nicolas M. Thiéry]
#7420: Mike Hansen: Fix uncaught infinite loop in coercion discovery
[Reviewed by Nicolas M. Thiéry, Robert Bradshaw]
#7421: Nicolas M. Thiéry: Weaker precondition for registering a new
coercion [Reviewed by Robert Bradshaw]
#7443: Florent Hivert: List all categories in the reference manual
[Reviewed by Nicolas M. Thiéry]
#7449: William Stein: Some doc request hangs sage eating all memory
[Reviewed by Florent Hivert]
#7450: Alex Ghitza: implement is_prime() for ideals [Reviewed by
Martin Albrecht]
#7460: William Stein: numerical noise on itanium (iras) [Reviewed by
Mike Hansen]
#7462: Kwankyu Lee: magma interface -- huge number of doctest failures
[Reviewed by Georg S. Weber]
#7463: William Stein: document memory management for the magma
interface [Reviewed by Georg Weber]
#7474: Martin Raum: Expose some more functionality of fmz_poly
[Reviewed by Mike Hansen]
#7478: Florent Hivert, Nicolas M. Thiéry: TestSuite improvements
[Reviewed by Nicolas M. Thiéry, Florent Hivert]
#7479: Mike Hansen: sage fails to integrate identity [Reviewed by
Karl-Dieter Crisman]
#7488: William Stein: plot3d? doesn't document plot_points option
[Reviewed by Mike Hansen]
--
Regards
Minh Van Nguyen
Alex Ghitza
Hi Minh,
Thanks for putting the release notes together (and thanks to Mike and
William and everyone else for getting the huge 4.3 release ready and
out).
On Sun, 27 Dec 2009 13:23:38 +1100, Minh Nguyen <nguye...@gmail.com> wrote:
>
> * Known issues
>
> * Arch Linux is not yet supported. Compiling Sage from source on Arch
> Linux requires some manual intervention.
>
I don't think this is true any more. There were issues with
sqlite/readline and R/fortran but they are fixed in 4.3. I had no
problem building sage-4.3 from source on 32-bit and 64-bit Arch Linux,
with no other manual intervention than the usual one-time things that
have to be done on other Linux platforms as well: installing the
prerequisites (including gcc-fortran) and setting the variables
SAGE_FORTRAN and SAGE_FORTRAN_LIB.
Best,
Alex
--
Alex Ghitza -- Lecturer in Mathematics -- The University of Melbourne
-- Australia -- http://www.ms.unimelb.edu.au/~aghitza/
William Stein
>
> Hi Minh,
>
> Thanks for putting the release notes together (and thanks to Mike and
> William and everyone else for getting the huge 4.3 release ready and
> out).
>
> On Sun, 27 Dec 2009 13:23:38 +1100, Minh Nguyen <nguye...@gmail.com> wrote:
>>
>> * Known issues
>>
>> * Arch Linux is not yet supported. Compiling Sage from source on Arch
>> Linux requires some manual intervention.
>>
>
> I don't think this is true any more. There were issues with
> sqlite/readline and R/fortran but they are fixed in 4.3. I had no
> problem building sage-4.3 from source on 32-bit and 64-bit Arch Linux,
> with no other manual intervention than the usual one-time things that
> have to be done on other Linux platforms as well: installing the
> prerequisites (including gcc-fortran) and setting the variables
> SAGE_FORTRAN and SAGE_FORTRAN_LIB.
I concur -- arch linux is now officially supported. (with SAGE_FORTRAN*)
-- William
kcrisman
> The following 62 people contributed to this release. Of those, 11 made
> their first contribution to Sage:
>
> * Anders Jonsson [first contribution]
First contribution was in 4.2.
> * Andrew Hou [first contribution]
Yup.
> * Håkan Granath [first contribution]
First in 4.1.2, I think - look for ASCII versions of this name.
> * Javier Vengoroso [first contribution]
Yup.
> * Luis Felipe Tabera [first contribution]
First contribution was in 4.2.1.
> * Martin Raum [first contribution]
Yup.
> * Qiang Wang [first contribution]
Yup.
> * Ralf Hemmecke [first contribution]
First in 4.1.2.
> * Robert Marik [first contribution]
Yup.
> * Soledad Villar [first contribution]
Yup.
> * Steve Pon [first contribution]
I think so.
So maybe seven? Also, at least one person appears as a reviewer in the
release notes but is not caught by mhansen's script (which is why we
need to do the ones not "merged" separately) - Soroosh Yazdani.
Either way, though, this is the second highest number of contributors
to a release ever - only under 4.1.2! This is great news - and shows
in having the fourth-most tickets closed ever.
Also, known issues should include for sure the fact that we still have
abort trap issues in OSX 10.6 - http://trac.sagemath.org/sage_trac/ticket/7095
- though it is no longer listed as a blocker.
Thanks for the hard work, Minh!
- kcrisman
William Stein
Yep :-(. I changed it from blocker to critical because (to me) a
"blocker" is something that *blocks* us from doing a release. Since
there is still currently no end in site the #7095, it doesn't make
sense to consider it a blocker.
William
slabbe
Using Ubuntu 9.04 and building from source, I am getting "Error
building R". See below for the last part of install.log.
Sébastien Labbé
*******
slabbe@pol:~/sage-4.3$ uname -a
Linux pol 2.6.28-17-generic #58-Ubuntu SMP Tue Dec 1 18:57:07 UTC 2009
i686 GNU/Linux
slabbe@pol:~/sage-4.3$ make
[...]
making dataentry.d from dataentry.c
making devX11.d from devX11.c
making rotated.d from rotated.c
making rbitmap.d from rbitmap.c
make[6]: quittant le répertoire « /home/slabbe/sage-4.3/spkg/build/
r-2.9.2/src/src/modules/X11 »
make[6]: entrant dans le répertoire « /home/slabbe/sage-4.3/spkg/build/
r-2.9.2/src/src/modules/X11 »
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -
D_REENTRANT -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/
include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -
I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/
libpng12 -I/home/slabbe/sage-4.3/local/include -DHAVE_CONFIG_H -
fpic -I/home/slabbe/sage-4.3/local/include -L/home/slabbe/sage-4.3/
local/lib/ -c dataentry.c -o dataentry.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -
D_REENTRANT -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/
include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -
I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/
libpng12 -I/home/slabbe/sage-4.3/local/include -DHAVE_CONFIG_H -
fpic -I/home/slabbe/sage-4.3/local/include -L/home/slabbe/sage-4.3/
local/lib/ -c devX11.c -o devX11.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -
D_REENTRANT -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/
include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -
I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/
libpng12 -I/home/slabbe/sage-4.3/local/include -DHAVE_CONFIG_H -
fpic -I/home/slabbe/sage-4.3/local/include -L/home/slabbe/sage-4.3/
local/lib/ -c rotated.c -o rotated.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -
D_REENTRANT -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/
include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -
I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/
libpng12 -I/home/slabbe/sage-4.3/local/include -DHAVE_CONFIG_H -
fpic -I/home/slabbe/sage-4.3/local/include -L/home/slabbe/sage-4.3/
local/lib/ -c rbitmap.c -o rbitmap.o
gcc -std=gnu99 -shared -L/home/slabbe/sage-4.3/local/lib/ -o R_X11.so
dataentry.o devX11.o rotated.o rbitmap.o -lSM -lICE -lpangocairo-1.0 -
lpango-1.0 -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -lX11 -lpng12 -lz -
lcairo -lX11 -lXt -lXmu -ljpeg -lpng -lz -ltiff -L../../../lib -lR -
lm
make[7]: entrant dans le répertoire « /home/slabbe/sage-4.3/spkg/build/
r-2.9.2/src/src/modules/X11 »
make[7]: quittant le répertoire « /home/slabbe/sage-4.3/spkg/build/
r-2.9.2/src/src/modules/X11 »
make[6]: quittant le répertoire « /home/slabbe/sage-4.3/spkg/build/
r-2.9.2/src/src/modules/X11 »
make[5]: quittant le répertoire « /home/slabbe/sage-4.3/spkg/build/
r-2.9.2/src/src/modules/X11 »
make[4]: quittant le répertoire « /home/slabbe/sage-4.3/spkg/build/
r-2.9.2/src/src/modules »
make[4]: entrant dans le répertoire « /home/slabbe/sage-4.3/spkg/build/
r-2.9.2/src/src/library »
mkdir -p -- ../../library
make[5]: entrant dans le répertoire « /home/slabbe/sage-4.3/spkg/build/
r-2.9.2/src/src/library/profile »
building system startup profile
mkdir -p -- ../../../library/base/R
make[5]: quittant le répertoire « /home/slabbe/sage-4.3/spkg/build/
r-2.9.2/src/src/library/profile »
make[5]: entrant dans le répertoire « /home/slabbe/sage-4.3/spkg/build/
r-2.9.2/src/src/library/base »
building package 'base'
make[6]: entrant dans le répertoire « /home/slabbe/sage-4.3/spkg/build/
r-2.9.2/src/src/library/base »
mkdir -p -- ../../../library/base/demo
mkdir -p -- ../../../library/base/po
mkdir -p -- ../../../library/base/man
make[6]: quittant le répertoire « /home/slabbe/sage-4.3/spkg/build/
r-2.9.2/src/src/library/base »
/home/slabbe/sage-4.3/spkg/build/r-2.9.2/src/bin/exec/R: /home/slabbe/
sage-4.3/local/lib/gcc-lib/i686-pc-linux-gnu/4.0.3/libgcc_s.so.1:
version `GCC_4.2.0' not found (required by /usr/lib/libstdc++.so.6)
make[5]: *** [all] Erreur 1
make[5]: quittant le répertoire « /home/slabbe/sage-4.3/spkg/build/
r-2.9.2/src/src/library/base »
make[4]: *** [R] Erreur 1
make[4]: quittant le répertoire « /home/slabbe/sage-4.3/spkg/build/
r-2.9.2/src/src/library »
make[3]: *** [R] Erreur 1
make[3]: quittant le répertoire « /home/slabbe/sage-4.3/spkg/build/
r-2.9.2/src/src »
make[2]: *** [R] Erreur 1
make[2]: quittant le répertoire « /home/slabbe/sage-4.3/spkg/build/
r-2.9.2/src »
Error building R.
real 1m41.702s
user 1m6.068s
sys 0m25.546s
sage: An error occurred while installing r-2.9.2
Please email sage-devel http://groups.google.com/group/sage-devel
explaining the problem and send the relevant part of
of /home/slabbe/sage-4.3/install.log. Describe your computer,
operating system, etc.
If you want to try to fix the problem yourself, *don't* just cd to
/home/slabbe/sage-4.3/spkg/build/r-2.9.2 and type 'make check' or
whatever is appropriate.
Instead, the following commands setup all environment variables
correctly and load a subshell for you to debug the error:
(cd '/home/slabbe/sage-4.3/spkg/build/r-2.9.2' && '/home/slabbe/
sage-4.3/sage' -sh)
When you are done debugging, you can type "exit" to leave the
subshell.
make[1]: *** [installed/r-2.9.2] Erreur 1
make[1]: quittant le répertoire « /home/slabbe/sage-4.3/spkg »
real 85m9.339s
user 73m10.610s
sys 9m32.284s
Error building Sage.
Nicolas M. Thiery
> Merry Christmas! I have released sage-4.3, which is a massive
> release with 230 tickets closed
Yippee!
What an exquisite Christmas gift for the Sage-Combinat team :-)
We are glad not to have to worry about this pile of patches anymore!
Cheers,
Nicolas
PS: Minh, let me know if you need help for the category/combinat part
of the release tour
--
Nicolas M. Thi�ry "Isil" <nth...@users.sf.net>
http://Nicolas.Thiery.name/
Nicolas M. Thiery
On Sun, Dec 27, 2009 at 01:23:38PM +1100, Minh Nguyen wrote:
> For the record, here's a release note for Sage 4.3:
Thanks!
> Sage 4.3 was released on December 24, 2009. It is available at
> * Major features, new spkgs and bug fixes
>
> * Many improvements in the build system thanks.
> * Major new features in the Sage notebook server.
> * Numerous new features in the combinatorics module.
> * Many improvements in the graph theory module, both the backend
> implementation and new features.
> * 15 package updates
Could be worth mentioning something like:
- Feature-rich implementation of categories, a la Axiom
(see http://www.sagemath.org/doc/reference/sage/categories/primer.html)
Cheers,
Nicolas
Minh Nguyen
On Mon, Dec 28, 2009 at 10:13 AM, Nicolas M. Thiery
<Nicolas...@u-psud.fr> wrote:
<SNIP>
> Could be worth mentioning something like:
>
> - Feature-rich implementation of categories, a la Axiom
>
> (see http://www.sagemath.org/doc/reference/sage/categories/primer.html)
Done. Updated both in the release note and HISTORY.txt.
Pat LeSmithe
> 4.
> I recently installed the jsmath SPKG on 4.2 so that students could
> from SAGE. The upgrade of 4.2 to 4.3 and a minor upgrade in jsmath
> happened at the same time. Now when I open a worksheet in the
The spkg at #7778
http://trac.sagemath.org/sage_trac/ticket/7778
should help with this problem.
pipedream
> On 12/26/2009 06:26 AM, pipedream wrote:
> > I recently installed the jsmath SPKG on 4.2 so that students could
> > print
> > from SAGE. The upgrade of 4.2 to 4.3 and a minor upgrade in jsmath
> > happened at the same time. Now when I open a worksheet in the
On Dec 28, 8:21 am, Pat LeSmithe <qed...@gmail.com> wrote:
> The spkg at #7778
> http://trac.sagemath.org/sage_trac/ticket/7778
> should help with this problem.
I tried it, but the problem persists.
lots of unpacking of fonts...
jsmath-image-fonts-1.4.p3/src/fonts/cmex10/plain/85/char4D.png
jsmath-image-fonts-1.4.p3/spkg-install
Finished extraction
****************************************************
Host system
uname -a:
Linux muizenberg 2.6.28-17-generic #58-Ubuntu SMP Tue Dec 1 21:27:25
UTC 2009 x86_64 GNU/Linux
****************************************************
****************************************************
CC Version
/usr/bin/colorgcc -v
Using built-in specs.
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu
4.3.3-5ubuntu4' --with-bugurl=file:///usr/share/doc/gcc-4.3/
README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/
usr --enable-shared --with-system-zlib --libexecdir=/usr/lib --without-
included-gettext --enable-threads=posix --enable-nls --with-gxx-
include-dir=/usr/include/c++/4.3 --program-suffix=-4.3 --enable-
clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --enable-mpfr --
with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --
host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 4.3.3 (Ubuntu 4.3.3-5ubuntu4)
****************************************************
Deleting old jsMath fonts...
Copying jsMath image fonts to /usr/local/src/sage-4.3/local/notebook/
javascript/jsmath/fonts ...
Finished installing jsMath image fonts.
real 0m2.558s
user 0m0.120s
sys 0m1.080s
Successfully installed jsmath-image-fonts-1.4.p3
Now cleaning up tmp files.
Making Sage/Python scripts relocatable...
Making script relocatable
Finished installing jsmath-image-fonts-1.4.p3.spkg
0 root@muizenberg:/usr/local/src/sage/spkg/optional#
But when I open a worksheet, or when I click File>Print in the
notebook menu, I still get
"It looks like jsMath failed to set up properly (error code -7). I
will try to keep going, but it could get ugly."
But when I persist and File>Print from the firefox menu of the preview
window that popped up,
it does do pretty printing. Or maybe that is just mathml? I don't
really know where this all fits in.
It seems to work, the error is just annoying.
regards,
Jan
ma...@mendelu.cz
On 28 pro, 11:01, pipedream <jan.groenew...@gmail.com> wrote:
> But when I open a worksheet, or when I click File>Print in the
> notebook menu, I still get
> "It looks like jsMath failed to set up properly (error code -7). I
> will try to keep going, but it could get ugly."
>
What happens if you switch to jsmath image fonts in the worksheet?
(clik the small jsmath button on the bottom right of the browser
window and choose options and image fonts. Does it work for you? the
math formulas are in black now.)
Robert
Jan Groenewald
On Mon, Dec 28, 2009 at 02:08:30AM -0800, ma...@mendelu.cz wrote:
> What happens if you switch to jsmath image fonts in the worksheet?
> (clik the small jsmath button on the bottom right of the browser
> window and choose options and image fonts. Does it work for you? the
> math formulas are in black now.)
I have one cell with show(integrate(x^2,x))
It shows something like
1 3
x
3
When I choose jsmath>options>image fonts (it was set to images for symbols only)
then the above output changes to
\frac{1}{3} \, x^{3}
and the jsmath popup error persists.
And it prints like that, LaTeX code, whether printing
from the jsmath control panel or from the notebook menu.
regards,
Jan
ma...@mendelu.cz
directory look like this?
(you may need to customise the begining of the path)
[marik@um-bc107 ../devel/sage/sage/misc]$ ls -l /opt/sage-4.3/local/
lib/python2.6/site-packages/sagenb-0.4.8-py2.6.egg/sagenb/data/jsmath/
fonts/
total 32
drwxr-xr-x 4 marik marik 4096 Jan 10 2006 cm-fonts
drwxr-xr-x 4 marik marik 4096 Aug 15 2005 cmbx10
drwxr-xr-x 4 marik marik 4096 May 5 2005 cmex10
drwxr-xr-x 4 marik marik 4096 May 5 2005 cmmi10
drwxr-xr-x 4 marik marik 4096 May 5 2005 cmr10
drwxr-xr-x 4 marik marik 4096 May 5 2005 cmsy10
drwxr-xr-x 4 marik marik 4096 Aug 15 2005 cmti10
drwxr-xr-x 4 marik marik 4096 Dec 26 23:50 msbm10
Robert
Jan Groenewald
On Mon, Dec 28, 2009 at 02:32:50AM -0800, ma...@mendelu.cz wrote:
> Do you have font files in right directory? Does the listing of the
> directory look like this?
> (you may need to customise the begining of the path)
>
> [marik@um-bc107 ../devel/sage/sage/misc]$ ls -l /opt/sage-4.3/local/
> lib/python2.6/site-packages/sagenb-0.4.8-py2.6.egg/sagenb/data/jsmath/
> fonts/
>
> total 32
> drwxr-xr-x 4 marik marik 4096 Jan 10 2006 cm-fonts
> drwxr-xr-x 4 marik marik 4096 Aug 15 2005 cmbx10
> drwxr-xr-x 4 marik marik 4096 May 5 2005 cmex10
> drwxr-xr-x 4 marik marik 4096 May 5 2005 cmmi10
> drwxr-xr-x 4 marik marik 4096 May 5 2005 cmr10
> drwxr-xr-x 4 marik marik 4096 May 5 2005 cmsy10
> drwxr-xr-x 4 marik marik 4096 Aug 15 2005 cmti10
> drwxr-xr-x 4 marik marik 4096 Dec 26 23:50 msbm10
No, it is in another place to yours.
/usr/local/src/sage-4.3/local/notebook/javascript/jsmath/fonts/
instead of
/usr/local/src/sage-4.3/local/lib/python2.6/site-packages/sagenb-0.4.8-py2.6.egg/sagenb/data/jsmath/fonts
0 root@muizenberg:~/bin#ls /usr/local/src/sage-4.3/local/notebook/javascript/jsmath/fonts/
cmbx10 cmex10 cm-fonts cmmi10 cmr10 cmsy10 cmti10
0 root@muizenberg:~/bin#ls /usr/local/src/sage-4.3/local/notebook/javascript/jsmath/fonts/
cmbx10 cmex10 cm-fonts cmmi10 cmr10 cmsy10 cmti10
0 root@muizenberg:~/bin#find /usr/local/src/sage-4.3/local/notebook/javascript/jsmath/fonts/|wc -l
20304
0 root@muizenberg:~/bin#du -hs /usr/local/src/sage-4.3/local/notebook/javascript/jsmath/fonts/
80M /usr/local/src/sage-4.3/local/notebook/javascript/jsmath/fonts/
0 root@muizenberg:~/bin#
0 root@muizenberg:~/bin#ls /usr/local/src/sage-4.3/local/lib/python2.6/site-packages/sagenb-0.4.8-py2.6.egg/sagenb/data/jsmath/fonts
total 4.0K
4.0K msbm10
0 root@muizenberg:~/bin#find /usr/local/src/sage-4.3/local/lib/python2.6/site-packages/sagenb-0.4.8-py2.6.egg/sagenb/data/jsmath/fonts|wc -l
3257
0 root@muizenberg:~/bin#du -hs /usr/local/src/sage-4.3/local/lib/python2.6/site-packages/sagenb-0.4.8-py2.6.egg/sagenb/data/jsmath/fonts
13M /usr/local/src/sage-4.3/local/lib/python2.6/site-packages/sagenb-0.4.8-py2.6.egg/sagenb/data/jsmath/fonts
I never tried to move these, they just are where the spkg's put them.
My SAGE_ROOT is /usr/local/src/sage-4.3.
I do keep a symlink to it /usr/local/src/sage -> sage-x.y
so that I can keep desktop icons, other path dependent things across
releases rebuilt from source.
regards,
Jan
--
.~.
/V\ Jan Groenewald
/( )\ www.aims.ac.za
^^-^^
ma...@mendelu.cz
fonts cmmi10 cmr10 cmsy10 cmti10 to the directory where msbm10 is
present. i.e. /usr/local/src/sage-4.3/local/lib/python2.6/site-
packages/sagenb-0.4.8-py2.6.egg/sagenb/data/jsmath/fonts
I did not test new spkg (...p3.spkg) for jsimage fonts, since I did
this move for my two installation and this worked. See
http://groups.google.cz/group/sage-devel/browse_thread/thread/82304cb7adbb22f9
btw: Are you sure that you installed the spkg from
http://sage.math.washington.edu/home/mpatel/trac/7778/jsmath-image-fonts-1.4.p3.spkg
?
Robert
On 28 pro, 11:50, Jan Groenewald <j...@aims.ac.za> wrote:
> Hi
>
ma...@mendelu.cz
trac is http://trac.sagemath.org/sage_trac/ticket/7778
btw: related to your command
root@muizenberg:~/bin#du -hs /usr/local/src/sage-4.3/local/lib/
python2.6/site-packages/sagenb-0.4.8-py2.6.egg/sagenb/data/jsmath/
fonts
13M /usr/local/src/sage-4.3/local/lib/python2.6/site-packages/
sagenb-0.4.8-py2.6.egg/sagenb/data/jsmath/fonts
This suggests that your fonts are on bad place. The value should be
more than 90 MB
Robert
On 28 pro, 11:57, "ma...@mendelu.cz" <ma...@mendelu.cz> wrote:
> Hi, I would try to copy manualy the directories cmbx10 cmex10 cm-
> fonts cmmi10 cmr10 cmsy10 cmti10 to the directory where msbm10 is
> present. i.e. /usr/local/src/sage-4.3/local/lib/python2.6/site-
> packages/sagenb-0.4.8-py2.6.egg/sagenb/data/jsmath/fonts
>
> I did not test new spkg (...p3.spkg) for jsimage fonts, since I did
> this move for my two installation and this worked. Seehttp://groups.google.cz/group/sage-devel/browse_thread/thread/82304cb...
>
> btw: Are you sure that you installed the spkg fromhttp://sage.math.washington.edu/home/mpatel/trac/7778/jsmath-image-fo...
Pat LeSmithe
> Hi, I would try to copy manualy the directories cmbx10 cmex10 cm-
> fonts cmmi10 cmr10 cmsy10 cmti10 to the directory where msbm10 is
> present. i.e. /usr/local/src/sage-4.3/local/lib/python2.6/site-
> packages/sagenb-0.4.8-py2.6.egg/sagenb/data/jsmath/fonts
>
> I did not test new spkg (...p3.spkg) for jsimage fonts, since I did
> this move for my two installation and this worked. See
> http://groups.google.cz/group/sage-devel/browse_thread/thread/82304cb7adbb22f9
> On 28 pro, 11:50, Jan Groenewald <j...@aims.ac.za> wrote:
>> No, it is in another place to yours.
>> /usr/local/src/sage-4.3/local/notebook/javascript/jsmath/fonts/
>> instead of
>> /usr/local/src/sage-4.3/local/lib/python2.6/site-packages/sagenb-0.4.8-py2.6.egg/sagenb/data/jsmath/fonts
Could you try deleting (or moving temporarily to another place) the
directory
/usr/local/src/sage-4.3/local/notebook/javascript/jsmath
then reinstalling the new spkg?
The spkg-install script could be a bit smarter. Right now, it tests for
the existence of the directory above to determine whether an *old*
version of the notebook is running. However, the older spkg mistakenly
created the directory!
I apologize for this.
Jan Groenewald
On Mon, Dec 28, 2009 at 02:57:35AM -0800, ma...@mendelu.cz wrote:
> Hi, I would try to copy manualy the directories cmbx10 cmex10 cm-
> fonts cmmi10 cmr10 cmsy10 cmti10 to the directory where msbm10 is
> present. i.e. /usr/local/src/sage-4.3/local/lib/python2.6/site-
> packages/sagenb-0.4.8-py2.6.egg/sagenb/data/jsmath/fonts
>
> I did not test new spkg (...p3.spkg) for jsimage fonts, since I did
> this move for my two installation and this worked. See
> http://groups.google.cz/group/sage-devel/browse_thread/thread/82304cb7adbb22f9
Yes, I saw that.
I now did
0 root@muizenberg:/usr/local/src/sage/local/lib/python2.6/site-packages/sagenb-0.4.8-py2.6.egg/sagenb/data/jsmath#mv fonts fonts.install
0 root@muizenberg:/usr/local/src/sage/local/lib/python2.6/site-packages/sagenb-0.4.8-py2.6.egg/sagenb/data/jsmath#ln -s /usr/local/src/sage/local/notebook/javascript/jsmath/fonts
and it works fine! No more jsmath error popping up. And the fraction is now aligned properly.
And "use image fonts" works, and looks even better. And all those print correctly.
> btw: Are you sure that you installed the spkg from
> http://sage.math.washington.edu/home/mpatel/trac/7778/jsmath-image-fonts-1.4.p3.spkg
> ?
Two links are shown at http://trac.sagemath.org/sage_trac/ticket/7778
I think I used the second link, boxen.math. (That first link, sage.math,
returned 404 not found.)
I have now reversed the symlinks to what seems to be the new way of doing things.
So, old way pointing to new way:
0 root@muizenberg:~#ls -l /usr/local/src/sage-4.3/local/notebook/javascript/jsmath/
total 4
lrwxrwxrwx 1 root root 101 2009-12-28 13:20 fonts -> /usr/local/src/sage/local/lib/python2.6/site-packages/sagenb-0.4.8-py2.6.egg/sagenb/data/jsmath/fonts
0 root@muizenberg:~#ls -l /usr/local/src/sage-4.3/local/lib/python2.6/site-packages/sagenb-0.4.8-py2.6.egg/sagenb/data/jsmath/fonts
total 28
drwxr-xr-x 4 root root 4096 2009-12-26 14:50 cmbx10
drwxr-xr-x 4 root root 4096 2009-12-26 14:50 cmex10
drwxr-xr-x 4 root root 4096 2009-12-26 14:50 cm-fonts
drwxr-xr-x 4 root root 4096 2009-12-26 14:50 cmmi10
drwxr-xr-x 4 root root 4096 2009-12-26 14:50 cmr10
drwxr-xr-x 4 root root 4096 2009-12-26 14:50 cmsy10
drwxr-xr-x 4 root root 4096 2009-12-26 14:50 cmti10
lrwxrwxrwx 1 root root 24 2009-12-28 13:20 msbm10
0 root@muizenberg:~#
Everything seems to be working fine. I don't know why the new
SPKG didn't pick up the problem. Should the old directory
not exist at all? /usr/local/src/sage-4.3/local/notebook/javascript/jsmath/?
Pat LeSmithe
> and it works fine! No more jsmath error popping up. And the fraction is now aligned properly.
That's great!
> Everything seems to be working fine. I don't know why the new
> SPKG didn't pick up the problem. Should the old directory
> not exist at all? /usr/local/src/sage-4.3/local/notebook/javascript/jsmath/?
Unless I'm mistaken, which is quite possible, the directory
SAGE_LOCAL/notebook/javascript/jsmath
is obsolete in Sage 4.3. I think I understand why the spkg-install in
jsmath-image-fonts-1.4.p2.spkg
created the directory by "intentional mistake." But I'm not sure why
the spkg-install in
jsmath-image-fonts-1.4.p3.spkg
did not *first* find the latest base install directory of jsMath:
SAGE_LOCAL/lib/python2.6/site-packages/sagenb-0.4.8-py2.6.egg/sagenb/data/jsmath
If you have a spare moment, could you please relay the output of
import os
from pkg_resources import Requirement, working_set
sagenb_path = working_set.find(Requirement.parse('sagenb')).location
print os.path.join(sagenb_path, 'sagenb', 'data', 'jsmath')
from a Sage 4.3 session?
Jan Groenewald
On Mon, Dec 28, 2009 at 03:55:21AM -0800, Pat LeSmithe wrote:
> Unless I'm mistaken, which is quite possible, the directory
> SAGE_LOCAL/notebook/javascript/jsmath
> is obsolete in Sage 4.3. I think I understand why the spkg-install in
> jsmath-image-fonts-1.4.p2.spkg
Perhaps the entire SAGE_LOCAL/notebook directory is obsolete as there
is nothing else in there?
I have left it ("fonts" under there) as a symlink to the new location.
> created the directory by "intentional mistake." But I'm not sure why
> the spkg-install in
> jsmath-image-fonts-1.4.p3.spkg
> did not *first* find the latest base install directory of jsMath:
> SAGE_LOCAL/lib/python2.6/site-packages/sagenb-0.4.8-py2.6.egg/sagenb/data/jsmath
> If you have a spare moment, could you please relay the output of
> import os
> from pkg_resources import Requirement, working_set
> sagenb_path = working_set.find(Requirement.parse('sagenb')).location
> print os.path.join(sagenb_path, 'sagenb', 'data', 'jsmath')
> from a Sage 4.3 session?
0 jan@muizenberg:~$sage
----------------------------------------------------------------------
| Sage Version 4.3, Release Date: 2009-12-24 |
| Type notebook() for the GUI, and license() for information. |
----------------------------------------------------------------------
Loading Sage library. Current Mercurial branch is: AIMS-autosave-patch
sage: import os
sage: from pkg_resources import Requirement, working_set
sage: sagenb_path = working_set.find(Requirement.parse('sagenb')).location
sage: print os.path.join(sagenb_path, 'sagenb', 'data', 'jsmath')
/usr/local/src/sage-4.3/local/lib/python2.6/site-packages/sagenb-0.4.8-py2.6.egg/sagenb/data/jsmath
sage:
David M. Monarres
On mac osx 10.6 the mysterious memory errors are spreading.
----------------------------------------------------------------------
The following tests failed:
sage -t "devel/sage/doc/en/a_tour_of_sage/index.rst"
sage -t "devel/sage/doc/en/bordeaux_2008/introduction.rst"
sage -t "devel/sage/doc/en/constructions/interface_issues.rst"
sage -t "devel/sage/doc/en/constructions/plotting.rst"
sage -t "devel/sage/doc/en/numerical_sage/scipy.rst"
sage -t "devel/sage/doc/en/tutorial/tour_algebra.rst"
sage -t "devel/sage/doc/en/tutorial/tour_functions.rst"
sage -t "devel/sage/doc/en/tutorial/tour_plotting.rst"
sage -t "devel/sage/doc/fr/a_tour_of_sage/index.rst"
sage -t "devel/sage/doc/fr/tutorial/tour_algebra.rst"
sage -t "devel/sage/doc/fr/tutorial/tour_plotting.rst"
sage -t "devel/sage/sage/calculus/calculus.py"
sage -t "devel/sage/sage/calculus/desolvers.py"
sage -t "devel/sage/sage/calculus/functional.py"
sage -t "devel/sage/sage/calculus/tests.py"
sage -t "devel/sage/sage/calculus/wester.py"
sage -t "devel/sage/sage/categories/category.py"
sage -t "devel/sage/sage/categories/examples/finite_semigroups.py"
sage -t "devel/sage/sage/categories/examples/finite_weyl_groups.py"
sage -t "devel/sage/sage/categories/finite_coxeter_groups.py"
sage -t "devel/sage/sage/categories/primer.py"
sage -t "devel/sage/sage/coding/code_bounds.py"
sage -t "devel/sage/sage/combinat/crystals/crystals.py"
sage -t "devel/sage/sage/combinat/crystals/letters.py"
sage -t "devel/sage/sage/combinat/posets/hasse_diagram.py"
sage -t "devel/sage/sage/combinat/posets/posets.py"
sage -t "devel/sage/sage/combinat/words/paths.py"
sage -t "devel/sage/sage/combinat/words/suffix_trees.py"
sage -t "devel/sage/sage/combinat/words/word.py"
sage -t "devel/sage/sage/combinat/yang_baxter_graph.py"
sage -t "devel/sage/sage/finance/time_series.pyx"
sage -t "devel/sage/sage/functions/hyperbolic.py"
sage -t "devel/sage/sage/functions/log.py"
sage -t "devel/sage/sage/functions/other.py"
sage -t "devel/sage/sage/functions/piecewise.py"
sage -t "devel/sage/sage/functions/prime_pi.pyx"
sage -t "devel/sage/sage/functions/special.py"
sage -t "devel/sage/sage/functions/transcendental.py"
sage -t "devel/sage/sage/functions/trig.py"
sage -t "devel/sage/sage/geometry/lattice_polytope.py"
sage -t "devel/sage/sage/graphs/bipartite_graph.py"
sage -t "devel/sage/sage/graphs/cliquer.pyx"
sage -t "devel/sage/sage/graphs/graph.py"
sage -t "devel/sage/sage/graphs/graph_bundle.py"
sage -t "devel/sage/sage/graphs/graph_plot.py"
sage -t "devel/sage/sage/groups/group.pyx"
sage -t "devel/sage/sage/groups/perm_gps/cubegroup.py"
sage -t "devel/sage/sage/gsl/dwt.pyx"
sage -t "devel/sage/sage/gsl/fft.pyx"
sage -t "devel/sage/sage/gsl/interpolation.pyx"
sage -t "devel/sage/sage/gsl/ode.pyx"
sage -t "devel/sage/sage/gsl/probability_distribution.pyx"
sage -t "devel/sage/sage/matrix/matrix2.pyx"
sage -t "devel/sage/sage/matrix/matrix_symbolic_dense.pyx"
sage -t "devel/sage/sage/modular/overconvergent/genus0.py"
sage -t "devel/sage/sage/modules/free_module_element.pyx"
sage -t "devel/sage/sage/numerical/optimize.py"
sage -t "devel/sage/sage/plot/animate.py"
sage -t "devel/sage/sage/plot/arrow.py"
sage -t "devel/sage/sage/plot/bar_chart.py"
sage -t "devel/sage/sage/plot/bezier_path.py"
sage -t "devel/sage/sage/plot/circle.py"
sage -t "devel/sage/sage/plot/colors.py"
sage -t "devel/sage/sage/plot/complex_plot.pyx"
sage -t "devel/sage/sage/plot/contour_plot.py"
sage -t "devel/sage/sage/plot/density_plot.py"
sage -t "devel/sage/sage/plot/disk.py"
sage -t "devel/sage/sage/plot/line.py"
sage -t "devel/sage/sage/plot/matrix_plot.py"
sage -t "devel/sage/sage/plot/plot.py"
sage -t "devel/sage/sage/plot/plot_field.py"
sage -t "devel/sage/sage/plot/point.py"
sage -t "devel/sage/sage/plot/polygon.py"
sage -t "devel/sage/sage/plot/primitive.py"
sage -t "devel/sage/sage/plot/scatter_plot.py"
sage -t "devel/sage/sage/plot/step.py"
sage -t "devel/sage/sage/plot/text.py"
sage -t "devel/sage/sage/rings/arith.py"
sage -t "devel/sage/sage/rings/polynomial/multi_polynomial_ideal.py"
sage -t "devel/sage/sage/rings/polynomial/pbori.pyx"
sage -t "devel/sage/sage/rings/polynomial/polynomial_element.pyx"
sage -t "devel/sage/sage/schemes/elliptic_curves/ell_generic.py"
sage -t "devel/sage/sage/schemes/elliptic_curves/ell_point.py"
sage -t "devel/sage/sage/schemes/elliptic_curves/ell_rational_field.py"
sage -t "devel/sage/sage/schemes/plane_curves/affine_curve.py"
sage -t "devel/sage/sage/schemes/plane_curves/projective_curve.py"
sage -t "devel/sage/sage/structure/sage_object.pyx"
sage -t "devel/sage/sage/symbolic/expression.pyx"
sage -t "devel/sage/sage/symbolic/function.pyx"
sage -t "devel/sage/sage/tests/book_stein_ent.py"
Total time for all tests: 5707.5 seconds
This is on a fresh source build and and uprgrade from 4.3-rc0.
Here is a link to the log
Also is there another forum which would be more appropriate for build test failure reports?
--
David Monarres
mona...@rohan.sdsu.edu
All most men really want in life is a wife, a house, two kids and a car,
a cat, no maybe a dog. Ummm, scratch one of the kids and add a dog.
Definitely a dog.
> --
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> URL: http://www.sagemath.org
Minh Nguyen
On Tue, Dec 29, 2009 at 6:34 AM, David M. Monarres <dmmon...@gmail.com> wrote:
<SNIP>
> Also is there another forum which would be more appropriate for build test failure reports?
See the sage-release [1] mailing list.
[1] http://groups.google.com/group/sage-release
Jason Grout
> Hi sage-devel,
>
> Using Ubuntu 9.04 and building from source, I am getting "Error
> building R". See below for the last part of install.log.
>
Try defining the SAGE_FORTRAN and SAGE_FORTRAN_LIB variables before
compiling Sage. See the readme file for details. This caught me on
Ubuntu 9.10 this time.
Thanks,
Jason
> S�bastien Labb�
>
> *******
>
> slabbe@pol:~/sage-4.3$ uname -a
> Linux pol 2.6.28-17-generic #58-Ubuntu SMP Tue Dec 1 18:57:07 UTC 2009
> i686 GNU/Linux
>
> slabbe@pol:~/sage-4.3$ make
>
> [...]
>
> making dataentry.d from dataentry.c
> making devX11.d from devX11.c
> making rotated.d from rotated.c
> making rbitmap.d from rbitmap.c
> make[6]: quittant le r�pertoire � /home/slabbe/sage-4.3/spkg/build/
> r-2.9.2/src/src/modules/X11 �
> make[6]: entrant dans le r�pertoire � /home/slabbe/sage-4.3/spkg/build/
> make[7]: entrant dans le r�pertoire � /home/slabbe/sage-4.3/spkg/build/
> r-2.9.2/src/src/modules/X11 �
> make[7]: quittant le r�pertoire � /home/slabbe/sage-4.3/spkg/build/
> r-2.9.2/src/src/modules/X11 �
> make[6]: quittant le r�pertoire � /home/slabbe/sage-4.3/spkg/build/
> r-2.9.2/src/src/modules/X11 �
> make[5]: quittant le r�pertoire � /home/slabbe/sage-4.3/spkg/build/
> r-2.9.2/src/src/modules/X11 �
> make[4]: quittant le r�pertoire � /home/slabbe/sage-4.3/spkg/build/
> r-2.9.2/src/src/modules �
> make[4]: entrant dans le r�pertoire � /home/slabbe/sage-4.3/spkg/build/
> r-2.9.2/src/src/library �
> mkdir -p -- ../../library
> make[5]: entrant dans le r�pertoire � /home/slabbe/sage-4.3/spkg/build/
> r-2.9.2/src/src/library/profile �
> building system startup profile
> mkdir -p -- ../../../library/base/R
> make[5]: quittant le r�pertoire � /home/slabbe/sage-4.3/spkg/build/
> r-2.9.2/src/src/library/profile �
> make[5]: entrant dans le r�pertoire � /home/slabbe/sage-4.3/spkg/build/
> r-2.9.2/src/src/library/base �
> building package 'base'
> make[6]: entrant dans le r�pertoire � /home/slabbe/sage-4.3/spkg/build/
> r-2.9.2/src/src/library/base �
> mkdir -p -- ../../../library/base/demo
> mkdir -p -- ../../../library/base/po
> mkdir -p -- ../../../library/base/man
> make[6]: quittant le r�pertoire � /home/slabbe/sage-4.3/spkg/build/
> r-2.9.2/src/src/library/base �
> /home/slabbe/sage-4.3/spkg/build/r-2.9.2/src/bin/exec/R: /home/slabbe/
> sage-4.3/local/lib/gcc-lib/i686-pc-linux-gnu/4.0.3/libgcc_s.so.1:
> version `GCC_4.2.0' not found (required by /usr/lib/libstdc++.so.6)
> make[5]: *** [all] Erreur 1
> make[5]: quittant le r�pertoire � /home/slabbe/sage-4.3/spkg/build/
> r-2.9.2/src/src/library/base �
> make[4]: *** [R] Erreur 1
> make[4]: quittant le r�pertoire � /home/slabbe/sage-4.3/spkg/build/
> r-2.9.2/src/src/library �
> make[3]: *** [R] Erreur 1
> make[3]: quittant le r�pertoire � /home/slabbe/sage-4.3/spkg/build/
> r-2.9.2/src/src �
> make[2]: *** [R] Erreur 1
> make[2]: quittant le r�pertoire � /home/slabbe/sage-4.3/spkg/build/
> r-2.9.2/src �
> Error building R.
>
> real 1m41.702s
> user 1m6.068s
> sys 0m25.546s
> sage: An error occurred while installing r-2.9.2
> Please email sage-devel http://groups.google.com/group/sage-devel
> explaining the problem and send the relevant part of
> of /home/slabbe/sage-4.3/install.log. Describe your computer,
> operating system, etc.
> If you want to try to fix the problem yourself, *don't* just cd to
> /home/slabbe/sage-4.3/spkg/build/r-2.9.2 and type 'make check' or
> whatever is appropriate.
> Instead, the following commands setup all environment variables
> correctly and load a subshell for you to debug the error:
> (cd '/home/slabbe/sage-4.3/spkg/build/r-2.9.2' && '/home/slabbe/
> sage-4.3/sage' -sh)
> When you are done debugging, you can type "exit" to leave the
> subshell.
> make[1]: *** [installed/r-2.9.2] Erreur 1
> make[1]: quittant le r�pertoire � /home/slabbe/sage-4.3/spkg �