Error while building sage (10.7.beta6)
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Janmenjaya Panda
Jun 25, 2025, 11:40:49 PM6/25/25
to sage-devel
Hello,
I ran the following command as a part of an installation error:
./sage -sh
./sage -b local spkg sagelib-10.7.beta6
This is the output:
(sage) janmenjaya@alpha-zero:~/open-source/sage$ ./sage -sh
Starting subshell with Sage environment variables set. Don't forget
to exit when you are done. Beware:
* Do not do anything with other copies of Sage on your system.
* Do not use this for installing Sage packages using "sage -i" or for
running "make" at Sage's root directory. These should be done
outside the Sage shell.
Bypassing shell configuration files...
Note: SAGE_ROOT=/home/janmenjaya/open-source/sage
(sage-sh) janmenjaya@alpha-zero:sage$ sage -b local spkg sagelib-10.7.beta6
make build/make/Makefile --stop
make[1]: Entering directory '/home/janmenjaya/open-source/sage'
make[1]: 'build/make/Makefile' is up to date.
make[1]: Leaving directory '/home/janmenjaya/open-source/sage'
build/bin/sage-logger \
"cd build/make && ./install 'sagelib-no-deps'" logs/install.log
make[1]: Entering directory '/home/janmenjaya/open-source/sage/build/make'
make[1]: Leaving directory '/home/janmenjaya/open-source/sage/build/make'
*** ALL ENVIRONMENT VARIABLES BEFORE BUILD: ***
ADDR2LINE=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-addr2line
ARCHFLAGS=
AR=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-ar
AS=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-as
build_alias=x86_64-conda-linux-gnu
BUILD=x86_64-conda-linux-gnu
CCACHE_BASEDIR=/home/janmenjaya/open-source/sage
CC_FOR_BUILD=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-cc
CC=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-cc
CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/janmenjaya/miniconda3/envs/sage/include
CHMOD=chmod
CMAKE_ARGS=-DCMAKE_AR=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-ar -DCMAKE_CXX_COMPILER_AR=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc-ar -DCMAKE_C_COMPILER_AR=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc-ar -DCMAKE_RANLIB=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-ranlib -DCMAKE_CXX_COMPILER_RANLIB=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc-ranlib -DCMAKE_C_COMPILER_RANLIB=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc-ranlib -DCMAKE_LINKER=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-ld -DCMAKE_STRIP=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-strip -DCMAKE_BUILD_TYPE=Release
CMAKE_PREFIX_PATH=/home/janmenjaya/miniconda3/envs/sage:/home/janmenjaya/miniconda3/envs/sage/x86_64-conda-linux-gnu/sysroot/usr
COLORTERM=truecolor
CONDA_BUILD_SYSROOT=/home/janmenjaya/miniconda3/envs/sage/x86_64-conda-linux-gnu/sysroot
CONDA_DEFAULT_ENV=sage
CONDA_EXE=/home/janmenjaya/miniconda3/bin/conda
CONDA_PREFIX=/home/janmenjaya/miniconda3/envs/sage
CONDA_PROMPT_MODIFIER=(sage)
CONDA_PYTHON_EXE=/home/janmenjaya/miniconda3/bin/python
_CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_conda_linux_gnu
CONDA_SHLVL=1
CONDA_TOOLCHAIN_BUILD=x86_64-conda-linux-gnu
CONDA_TOOLCHAIN_HOST=x86_64-conda-linux-gnu
CPATH=/home/janmenjaya/open-source/sage/local/include
CP=cp
CPPFLAGS=-DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/janmenjaya/miniconda3/envs/sage/include
CPP=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-cpp
CXXFILT=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-c++filt
CXXFLAGS=-fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/janmenjaya/miniconda3/envs/sage/include
CXX_FOR_BUILD=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-c++
CXX=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-c++
CYSIGNALS_CRASH_DAYS=7
CYSIGNALS_CRASH_LOGS=/home/janmenjaya/.sage//crash_logs
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/1000/bus
DEBUG_CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem /home/janmenjaya/miniconda3/envs/sage/include
DEBUG_CPPFLAGS=-D_DEBUG -D_FORTIFY_SOURCE=2 -Og -isystem /home/janmenjaya/miniconda3/envs/sage/include
DEBUG_CXXFLAGS=-fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem /home/janmenjaya/miniconda3/envs/sage/include
DEBUG_FFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/janmenjaya/miniconda3/envs/sage/include -I/home/janmenjaya/miniconda3/envs/sage/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fcheck=all -fbacktrace -fimplicit-none -fvar-tracking-assignments -ffunction-sections -pipe
DEBUG_FORTRANFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/janmenjaya/miniconda3/envs/sage/include -I/home/janmenjaya/miniconda3/envs/sage/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fcheck=all -fbacktrace -fimplicit-none -fvar-tracking-assignments -ffunction-sections -pipe
DEFAULTS_PATH=/usr/share/gconf/ubuntu.default.path
DESKTOP_SESSION=ubuntu
DISPLAY=:0
DOT_SAGE=/home/janmenjaya/.sage/
DWP=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-dwp
ELFEDIT=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-elfedit
ENVMAN_LOAD=loaded
F77=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gfortran
F90=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gfortran
F95=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gfortran
FC_FOR_BUILD=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gfortran
FC=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gfortran
FFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/janmenjaya/miniconda3/envs/sage/include -I/home/janmenjaya/miniconda3/envs/sage/include
FORTRANFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/janmenjaya/miniconda3/envs/sage/include -I/home/janmenjaya/miniconda3/envs/sage/include
GCC_AR=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc-ar
GCC=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc
GCC_NM=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc-nm
GCC_RANLIB=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc-ranlib
GDMSESSION=ubuntu
GFORTRAN=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gfortran
GJS_DEBUG_OUTPUT=stderr
GJS_DEBUG_TOPICS=JS ERROR;JS LOG
GNOME_DESKTOP_SESSION_ID=this-is-deprecated
GNOME_SHELL_SESSION_MODE=ubuntu
GNOME_TERMINAL_SCREEN=/org/gnome/Terminal/screen/df94a991_4ebc_452d_bf0a_8cef9f5b0fd1
GNOME_TERMINAL_SERVICE=:1.403
GPG_AGENT_INFO=/run/user/1000/gnupg/S.gpg-agent:0:1
GPROF=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gprof
GSETTINGS_SCHEMA_DIR_CONDA_BACKUP=
GSETTINGS_SCHEMA_DIR=/home/janmenjaya/miniconda3/envs/sage/share/glib-2.0/schemas
GTK_MODULES=gail:atk-bridge
GXX=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-g++
HOME=/home/janmenjaya
host_alias=x86_64-conda-linux-gnu
HOST=x86_64-conda-linux-gnu
id=2090
ID=Introduction to Scientific Computing
IM_CONFIG_PHASE=1
INFOPATH=/home/janmenjaya/open-source/sage/local/share/info::
INVOCATION_ID=cb452b47793749b8a39ff753d3bc664b
IPYTHONDIR=/home/janmenjaya/.sage//ipython-5.0.0
JOURNAL_STREAM=8:53677
JUPYTER_CONFIG_DIR=/home/janmenjaya/.sage//jupyter-4.1
LANG=en_IN
LANGUAGE=en_IN:en
LDFLAGS=-Wl,-rpath-link,/home/janmenjaya/open-source/sage/local/lib -L/home/janmenjaya/open-source/sage/local/lib -Wl,-rpath,/home/janmenjaya/open-source/sage/local/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/janmenjaya/miniconda3/envs/sage/lib -Wl,-rpath-link,/home/janmenjaya/miniconda3/envs/sage/lib -L/home/janmenjaya/miniconda3/envs/sage/lib
LD_GOLD=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-ld.gold
LD=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-ld
LESSCLOSE=/usr/bin/lesspipe %s %s
LESSOPEN=| /usr/bin/lesspipe %s
LIBRARY_PATH=/home/janmenjaya/open-source/sage/local/lib
LN=ln
LOGNAME=janmenjaya
LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:
MAKEFLAGS= V=1
MAKELEVEL=1
MAKE=make
MAKE_TERMERR=/dev/pts/2
MAKE_TERMOUT=/dev/pts/2
MANAGERPID=1774
MANDATORY_PATH=/usr/share/gconf/ubuntu.mandatory.path
MATHEMATICA_HOME=/usr/share/Wolfram/Documentation/13.3/en-us
MATLAB=/usr/local/MATLAB
MAXIMA_USERDIR=/home/janmenjaya/.sage//maxima
MESON_ARGS=-Dbuildtype=release
MFLAGS=
MKDIR=mkdir
MODSIZE=10000
MODTEMPFILE=file.txt.oD7PkoBnBpIkZxQiXzda
MPLCONFIGDIR=/home/janmenjaya/.sage//matplotlib-1.5.1
MV=mv
MYMC=Laptop
NM=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-nm
OBJCOPY=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-objcopy
OBJDUMP=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-objdump
OLDPWD=/home/janmenjaya/open-source/sage
OPENBLAS_NUM_THREADS=1
PATH=/home/janmenjaya/open-source/sage/build/bin:/home/janmenjaya/open-source/sage/src/bin:/home/janmenjaya/open-source/sage/local/bin:/home/janmenjaya/open-source/sage/src/bin:/home/janmenjaya/open-source/sage/build/bin:/home/janmenjaya/open-source/sage/local/var/lib/sage/venv-python3.12.5/bin:/home/janmenjaya/open-source/sage/local/bin:/home/janmenjaya/miniconda3/envs/sage/bin:/usr/local/bin:/home/janmenjaya/miniconda3/condabin:/home/janmenjaya/.local/bin:/home/janmenjaya/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/janmenjaya/install/ParaView-5.12/bin
PERL5LIB=/home/janmenjaya/open-source/sage/local/lib/perl5:
PKG_CONFIG_PATH=/home/janmenjaya/open-source/sage/local/lib/pkgconfig
PWD=/home/janmenjaya/open-source/sage/build/make
PYDEVD_DISABLE_FILE_VALIDATION=1
PYTHON_EGG_CACHE=/home/janmenjaya/.sage//.python-eggs
PYTHONPATH=/home/janmenjaya/open-source/sage/local
PYTHONUSERBASE=/home/janmenjaya/.sage//local
QT_ACCESSIBILITY=1
QT_IM_MODULE=ibus
RANLIB=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-ranlib
READELF=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-readelf
R_MAKEVARS_USER=/home/janmenjaya/.sage//R/Makevars.user
__sage__=
SAGE_DISTFILES=/home/janmenjaya/open-source/sage/upstream
SAGE_DOC=/home/janmenjaya/open-source/sage/local/share/doc/sage
SAGE_DOC_SRC=/home/janmenjaya/open-source/sage/src/doc
SAGE_ENV_CONFIG_SOURCED=1
SAGE_ENV_SOURCED=6:/home/janmenjaya/open-source/sage/local:/home/janmenjaya/open-source/sage/local/var/lib/sage/venv-python3.12.5:/home/janmenjaya/open-source/sage/src
SAGE_LOCAL=/home/janmenjaya/open-source/sage/local
SAGE_LOGFILE=logs/install.log
SAGE_LOGS=/home/janmenjaya/open-source/sage/logs/pkgs
SAGE_NUM_THREADS=1
SAGE_NUM_THREADS_PARALLEL=2
SAGE_ORIG_PATH=/home/janmenjaya/miniconda3/envs/sage/bin:/usr/local/bin:/home/janmenjaya/miniconda3/condabin:/home/janmenjaya/.local/bin:/home/janmenjaya/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/janmenjaya/install/ParaView-5.12/bin
SAGE_ORIG_PATH_SET=True
SAGE_PKGCONFIG=/home/janmenjaya/open-source/sage/local/lib/pkgconfig
SAGE_REPO_ANONYMOUS=https://github.com/sagemath/sage.git
SAGE_REPO_AUTHENTICATED=https://github.com/sagemath/sage.git
SAGE_ROOT=/home/janmenjaya/open-source/sage
SAGE_SHARE=/home/janmenjaya/open-source/sage/local/share
SAGE_SPKG_INST=/home/janmenjaya/open-source/sage/local/var/lib/sage/installed
SAGE_SRC=/home/janmenjaya/open-source/sage/src
SAGE_STARTUP_FILE=/home/janmenjaya/.sage//init.sage
SAGE_VENV=/home/janmenjaya/open-source/sage/local/var/lib/sage/venv-python3.12.5
_SBCL_HOME_CONDA_BACKUP=
SBCL_HOME=/home/janmenjaya/miniconda3/envs/sage/lib/sbcl
SESSION_MANAGER=local/alpha-zero:@/tmp/.ICE-unix/1923,unix/alpha-zero:/tmp/.ICE-unix/1923
SHELL=/bin/bash
SHLVL=5
SIZE=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-size
SSH_AGENT_PID=1885
SSH_AUTH_SOCK=/run/user/1000/keyring/ssh
STRINGS=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-strings
STRIP=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-strip
TERMINFO=/home/janmenjaya/open-source/sage/local/share/terminfo
TERM=xterm-256color
TOUCH=touch
UNAME=Linux
USER=janmenjaya
USERNAME=janmenjaya
_=/usr/bin/env
VTE_VERSION=6003
WINDOWPATH=2
XAUTHORITY=/run/user/1000/gdm/Xauthority
XDG_CONFIG_DIRS=/etc/xdg/xdg-ubuntu:/etc/xdg
XDG_CURRENT_DESKTOP=ubuntu:GNOME
XDG_DATA_DIRS=/usr/share/ubuntu:/usr/local/share/:/usr/share/:/var/lib/snapd/desktop
XDG_MENU_PREFIX=gnome-
XDG_RUNTIME_DIR=/run/user/1000
XDG_SESSION_CLASS=user
XDG_SESSION_DESKTOP=ubuntu
XDG_SESSION_TYPE=x11
XML_CATALOG_FILES=file:///home/janmenjaya/miniconda3/envs/sage/etc/xml/catalog file:///etc/xml/catalog
XMODIFIERS=@im=ibus
***********************************************
make[1]: Entering directory '/home/janmenjaya/open-source/sage/build/make'
[sagelib-10.7.beta6] Setting up build directory /home/janmenjaya/open-source/sage/local/var/lib/sage/venv-python3.12.5/var/tmp/sage/build/sagelib-10.7.beta6
[sagelib-10.7.beta6] Host system: Linux alpha-zero 5.15.0-139-generic #149~20.04.1-Ubuntu SMP Wed Apr 16 08:29:56 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux
[sagelib-10.7.beta6] C compiler: /home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-cc, Reading specs from /home/janmenjaya/miniconda3/envs/sage/bin/../lib/gcc/x86_64-conda-linux-gnu/13.3.0/specs, could not find specs file conda.specs, COLLECT_GCC=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-cc, COLLECT_LTO_WRAPPER=/home/janmenjaya/miniconda3/envs/sage/bin/../libexec/gcc/x86_64-conda-linux-gnu/13.3.0/lto-wrapper, Target: x86_64-conda-linux-gnu, Configured with: ../configure --prefix=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho --with-slibdir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib --libdir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib --mandir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/man --build=x86_64-conda-linux-gnu --host=x86_64-conda-linux-gnu --target=x86_64-conda-linux-gnu --enable-languages=c,c++,fortran,objc,obj-c++ --enable-__cxa_atexit --disable-libmudflap --enable-libgomp --disable-libssp --enable-libquadmath --enable-libquadmath-support --enable-lto --enable-target-optspace --enable-plugin --enable-gold --disable-nls --disable-bootstrap --disable-multilib --enable-long-long --with-sysroot=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/x86_64-conda-linux-gnu/sysroot --with-build-sysroot=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/work/cf-compilers/x86_64-conda-linux-gnu/sysroot --with-native-system-header-dir=/usr/include --with-gxx-include-dir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/gcc/x86_64-conda-linux-gnu/13.3.0/include/c++ --with-pkgversion='conda-forge gcc 13.3.0-2' --with-bugurl=https://github.com/conda-forge/ctng-compilers-feedstock/issues/new/choose --enable-libsanitizer --enable-default-pie --enable-threads=posix, Thread model: posix, Supported LTO compression algorithms: zlib, gcc version 13.3.0 (conda-forge gcc 13.3.0-2)
[sagelib-10.7.beta6] No stamp file for package 'sagelib' in /home/janmenjaya/open-source/sage/local/var/lib/sage/venv-python3.12.5/var/lib/sage/installed
[sagelib-10.7.beta6] No spkg-legacy-uninstall script; nothing to do
[sagelib-10.7.beta6] [spkg-install] Installing sagelib-10.7.beta6 (editable mode)
[sagelib-10.7.beta6] [spkg-install] Using pip 25.1.1 from /home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/pip (python 3.11)
[sagelib-10.7.beta6] [spkg-install] Obtaining file:///home/janmenjaya/open-source/sage/src
[sagelib-10.7.beta6] [spkg-install] Checking if build backend supports build_editable: started
[sagelib-10.7.beta6] [spkg-install] Running command Checking if build backend supports build_editable
[sagelib-10.7.beta6] [spkg-install] Checking if build backend supports build_editable: finished with status 'done'
[sagelib-10.7.beta6] [spkg-install] Preparing editable metadata (pyproject.toml): started
[sagelib-10.7.beta6] [spkg-install] Running command Preparing editable metadata (pyproject.toml)
[sagelib-10.7.beta6] [spkg-install] /home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
[sagelib-10.7.beta6] [spkg-install] !!
[sagelib-10.7.beta6] [spkg-install]
[sagelib-10.7.beta6] [spkg-install] ********************************************************************************
[sagelib-10.7.beta6] [spkg-install] Please consider removing the following classifiers in favor of a SPDX license expression:
[sagelib-10.7.beta6] [spkg-install]
[sagelib-10.7.beta6] [spkg-install] License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
[sagelib-10.7.beta6] [spkg-install]
[sagelib-10.7.beta6] [spkg-install] See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
[sagelib-10.7.beta6] [spkg-install] ********************************************************************************
[sagelib-10.7.beta6] [spkg-install]
[sagelib-10.7.beta6] [spkg-install] !!
[sagelib-10.7.beta6] [spkg-install] self._finalize_license_expression()
[sagelib-10.7.beta6] [spkg-install] running dist_info
[sagelib-10.7.beta6] [spkg-install] creating /tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info
[sagelib-10.7.beta6] [spkg-install] writing /tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info/PKG-INFO
[sagelib-10.7.beta6] [spkg-install] writing dependency_links to /tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info/dependency_links.txt
[sagelib-10.7.beta6] [spkg-install] writing requirements to /tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info/requires.txt
[sagelib-10.7.beta6] [spkg-install] writing top-level names to /tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info/top_level.txt
[sagelib-10.7.beta6] [spkg-install] writing manifest file '/tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info/SOURCES.txt'
[sagelib-10.7.beta6] [spkg-install] reading manifest file '/tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info/SOURCES.txt'
[sagelib-10.7.beta6] [spkg-install] reading manifest template 'MANIFEST.in'
[sagelib-10.7.beta6] [spkg-install] no previously-included directories found matching 'sage/ext/interpreters'
[sagelib-10.7.beta6] [spkg-install] no previously-included directories found matching 'sage_docbuild'
[sagelib-10.7.beta6] [spkg-install] no previously-included directories found matching 'doc'
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files found matching 'sage_setup/autogen/giacpy*'
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching '*.c' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching '*.cpp' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files found matching 'sage/graphs/bliss.p*'
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files found matching 'sage/libs/sirocco.p*'
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files found matching 'sage/graphs/graph_decompositions/tdlib.p*'
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching 'all__sagemath_bliss.py' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching 'all__sagemath_coxeter3.py' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching 'all__sagemath_mcqd.py' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching 'all__sagemath_meataxe.py' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching 'all__sagemath_sirocco.py' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching 'all__sagemath_tdlib.py' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching '__pycache__' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching '*.bak' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching '*.so' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching '*~' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] no previously-included directories found matching '.tox'
[sagelib-10.7.beta6] [spkg-install] no previously-included directories found matching 'build'
[sagelib-10.7.beta6] [spkg-install] no previously-included directories found matching 'dist'
[sagelib-10.7.beta6] [spkg-install] adding license file 'LICENSE.txt'
[sagelib-10.7.beta6] [spkg-install] writing manifest file '/tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info/SOURCES.txt'
[sagelib-10.7.beta6] [spkg-install] creating '/tmp/pip-modern-metadata-ydp_40b_/sagemath_standard-10.7b6.dist-info'
[sagelib-10.7.beta6] [spkg-install] Preparing editable metadata (pyproject.toml): finished with status 'done'
[sagelib-10.7.beta6] [spkg-install] Building wheels for collected packages: sagemath-standard
[sagelib-10.7.beta6] [spkg-install] Building editable for sagemath-standard (pyproject.toml): started
[sagelib-10.7.beta6] [spkg-install] Running command Building editable for sagemath-standard (pyproject.toml)
[sagelib-10.7.beta6] [spkg-install] Generating interpreters for fast_callable in /home/janmenjaya/open-source/sage/src/sage/ext/interpreters
[sagelib-10.7.beta6] [spkg-install] -> First build of interpreters
[sagelib-10.7.beta6] [spkg-install] ************************************************************************
[sagelib-10.7.beta6] [spkg-install] Traceback (most recent call last):
[sagelib-10.7.beta6] [spkg-install] File "/home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 389, in <module>
[sagelib-10.7.beta6] [spkg-install] main()
[sagelib-10.7.beta6] [spkg-install] File "/home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 373, in main
[sagelib-10.7.beta6] [spkg-install] json_out["return_val"] = hook(**hook_input["kwargs"])
[sagelib-10.7.beta6] [spkg-install] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[sagelib-10.7.beta6] [spkg-install] File "/home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 303, in build_editable
[sagelib-10.7.beta6] [spkg-install] return hook(wheel_directory, config_settings, metadata_directory)
[sagelib-10.7.beta6] [spkg-install] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[sagelib-10.7.beta6] [spkg-install] File "/home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/setuptools/build_meta.py", line 468, in build_editable
[sagelib-10.7.beta6] [spkg-install] return self._build_with_temp_dir(
[sagelib-10.7.beta6] [spkg-install] ^^^^^^^^^^^^^^^^^^^^^^^^^^
[sagelib-10.7.beta6] [spkg-install] File "/home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/setuptools/build_meta.py", line 404, in _build_with_temp_dir
[sagelib-10.7.beta6] [spkg-install] self.run_setup()
[sagelib-10.7.beta6] [spkg-install] File "/home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/setuptools/build_meta.py", line 317, in run_setup
[sagelib-10.7.beta6] [spkg-install] exec(code, locals())
[sagelib-10.7.beta6] [spkg-install] File "<string>", line 93, in <module>
[sagelib-10.7.beta6] [spkg-install] ModuleNotFoundError: No module named 'Cython'
[sagelib-10.7.beta6] [spkg-install] ************************************************************************
[sagelib-10.7.beta6] [spkg-install] Error building the Sage library
[sagelib-10.7.beta6] [spkg-install] ************************************************************************
[sagelib-10.7.beta6] [spkg-install] Please email sage-devel (http://groups.google.com/group/sage-devel)
[sagelib-10.7.beta6] [spkg-install] explaining the problem and including the relevant part of the log file
[sagelib-10.7.beta6] [spkg-install]
[sagelib-10.7.beta6] [spkg-install] Describe your computer, operating system, etc.
[sagelib-10.7.beta6] [spkg-install] ************************************************************************
[sagelib-10.7.beta6] [spkg-install] error: subprocess-exited-with-error
[sagelib-10.7.beta6] [spkg-install]
[sagelib-10.7.beta6] [spkg-install] × Building editable for sagemath-standard (pyproject.toml) did not run successfully.
[sagelib-10.7.beta6] [spkg-install] │ exit code: 1
[sagelib-10.7.beta6] [spkg-install] ╰─> See above for output.
[sagelib-10.7.beta6] [spkg-install]
[sagelib-10.7.beta6] [spkg-install] note: This error originates from a subprocess, and is likely not a problem with pip.
[sagelib-10.7.beta6] [spkg-install] full command: /home/janmenjaya/miniconda3/envs/sage/bin/python3 /home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_editable /tmp/tmpqxppr0j0
[sagelib-10.7.beta6] [spkg-install] cwd: /home/janmenjaya/open-source/sage/src
[sagelib-10.7.beta6] [spkg-install] Building editable for sagemath-standard (pyproject.toml): finished with status 'error'
[sagelib-10.7.beta6] [spkg-install] ERROR: Failed building editable for sagemath-standard
[sagelib-10.7.beta6] [spkg-install] Failed to build sagemath-standard
[sagelib-10.7.beta6] [spkg-install] ERROR: Failed to build installable wheels for some pyproject.toml based projects (sagemath-standard)
[sagelib-10.7.beta6] [spkg-install] ********************************************************************************************************************************************
[sagelib-10.7.beta6] [spkg-install] Error installing sagelib-10.7.beta6
[sagelib-10.7.beta6] [spkg-install] ********************************************************************************************************************************************
[sagelib-10.7.beta6] ************************************************************************
[sagelib-10.7.beta6] Error installing package sagelib-10.7.beta6
[sagelib-10.7.beta6] ************************************************************************
[sagelib-10.7.beta6] Please email sage-devel (http://groups.google.com/group/sage-devel)
[sagelib-10.7.beta6] explaining the problem and including the log files
[sagelib-10.7.beta6] /home/janmenjaya/open-source/sage/logs/pkgs/sagelib-10.7.beta6.log
[sagelib-10.7.beta6] and
[sagelib-10.7.beta6] /home/janmenjaya/open-source/sage/config.log
[sagelib-10.7.beta6] Describe your computer, operating system, etc.
[sagelib-10.7.beta6] If you want to try to fix the problem yourself, *don't* just cd to
[sagelib-10.7.beta6] /home/janmenjaya/open-source/sage/local/var/lib/sage/venv-python3.12.5/var/tmp/sage/build/sagelib-10.7.beta6 and type 'make' or whatever is appropriate.
[sagelib-10.7.beta6] Instead, the following commands setup all environment variables
[sagelib-10.7.beta6] correctly and load a subshell for you to debug the error:
[sagelib-10.7.beta6] (cd '/home/janmenjaya/open-source/sage/local/var/lib/sage/venv-python3.12.5/var/tmp/sage/build/sagelib-10.7.beta6' && '/home/janmenjaya/open-source/sage/sage' --buildsh)
[sagelib-10.7.beta6] When you are done debugging, you can type "exit" to leave the subshell.
[sagelib-10.7.beta6] ************************************************************************
make[1]: *** [Makefile:3547: sagelib-SAGE_VENV-no-deps] Error 1
make[1]: Leaving directory '/home/janmenjaya/open-source/sage/build/make'
***************************************************************
Error building Sage.
The following package(s) may have failed to build (not necessarily
during this run of 'make sagelib-no-deps'):
* package: brial-1.2.8
last build time: Jun 26 08:50
log file: /home/janmenjaya/open-source/sage/logs/pkgs/brial-1.2.8.log
* package: sagelib-10.7.beta6
last build time: Jun 26 09:03
log file: /home/janmenjaya/open-source/sage/logs/pkgs/sagelib-10.7.beta6.log
It is safe to delete any log files and build directories, but they
contain information that is helpful for debugging build problems.
WARNING: If you now run 'make' again, the build directory of the
same version of the package will, by default, be deleted. Set the
environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this.
make: *** [Makefile:40: sagelib-no-deps] Error 1
I have attached the log files and my systems configuration herewith.
I will appreciate, if someone could please kindly help me in this regard.
Please do let me know, if I need to provide any other details as well.
Thanks and warm regards,
Janmenjaya
I ran the following command as a part of an installation error:
./sage -sh
./sage -b local spkg sagelib-10.7.beta6
This is the output:
(sage) janmenjaya@alpha-zero:~/open-source/sage$ ./sage -sh
Starting subshell with Sage environment variables set. Don't forget
to exit when you are done. Beware:
* Do not do anything with other copies of Sage on your system.
* Do not use this for installing Sage packages using "sage -i" or for
running "make" at Sage's root directory. These should be done
outside the Sage shell.
Bypassing shell configuration files...
Note: SAGE_ROOT=/home/janmenjaya/open-source/sage
(sage-sh) janmenjaya@alpha-zero:sage$ sage -b local spkg sagelib-10.7.beta6
make build/make/Makefile --stop
make[1]: Entering directory '/home/janmenjaya/open-source/sage'
make[1]: 'build/make/Makefile' is up to date.
make[1]: Leaving directory '/home/janmenjaya/open-source/sage'
build/bin/sage-logger \
"cd build/make && ./install 'sagelib-no-deps'" logs/install.log
make[1]: Entering directory '/home/janmenjaya/open-source/sage/build/make'
make[1]: Leaving directory '/home/janmenjaya/open-source/sage/build/make'
*** ALL ENVIRONMENT VARIABLES BEFORE BUILD: ***
ADDR2LINE=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-addr2line
ARCHFLAGS=
AR=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-ar
AS=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-as
build_alias=x86_64-conda-linux-gnu
BUILD=x86_64-conda-linux-gnu
CCACHE_BASEDIR=/home/janmenjaya/open-source/sage
CC_FOR_BUILD=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-cc
CC=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-cc
CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/janmenjaya/miniconda3/envs/sage/include
CHMOD=chmod
CMAKE_ARGS=-DCMAKE_AR=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-ar -DCMAKE_CXX_COMPILER_AR=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc-ar -DCMAKE_C_COMPILER_AR=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc-ar -DCMAKE_RANLIB=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-ranlib -DCMAKE_CXX_COMPILER_RANLIB=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc-ranlib -DCMAKE_C_COMPILER_RANLIB=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc-ranlib -DCMAKE_LINKER=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-ld -DCMAKE_STRIP=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-strip -DCMAKE_BUILD_TYPE=Release
CMAKE_PREFIX_PATH=/home/janmenjaya/miniconda3/envs/sage:/home/janmenjaya/miniconda3/envs/sage/x86_64-conda-linux-gnu/sysroot/usr
COLORTERM=truecolor
CONDA_BUILD_SYSROOT=/home/janmenjaya/miniconda3/envs/sage/x86_64-conda-linux-gnu/sysroot
CONDA_DEFAULT_ENV=sage
CONDA_EXE=/home/janmenjaya/miniconda3/bin/conda
CONDA_PREFIX=/home/janmenjaya/miniconda3/envs/sage
CONDA_PROMPT_MODIFIER=(sage)
CONDA_PYTHON_EXE=/home/janmenjaya/miniconda3/bin/python
_CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_conda_linux_gnu
CONDA_SHLVL=1
CONDA_TOOLCHAIN_BUILD=x86_64-conda-linux-gnu
CONDA_TOOLCHAIN_HOST=x86_64-conda-linux-gnu
CPATH=/home/janmenjaya/open-source/sage/local/include
CP=cp
CPPFLAGS=-DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/janmenjaya/miniconda3/envs/sage/include
CPP=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-cpp
CXXFILT=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-c++filt
CXXFLAGS=-fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/janmenjaya/miniconda3/envs/sage/include
CXX_FOR_BUILD=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-c++
CXX=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-c++
CYSIGNALS_CRASH_DAYS=7
CYSIGNALS_CRASH_LOGS=/home/janmenjaya/.sage//crash_logs
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/1000/bus
DEBUG_CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem /home/janmenjaya/miniconda3/envs/sage/include
DEBUG_CPPFLAGS=-D_DEBUG -D_FORTIFY_SOURCE=2 -Og -isystem /home/janmenjaya/miniconda3/envs/sage/include
DEBUG_CXXFLAGS=-fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem /home/janmenjaya/miniconda3/envs/sage/include
DEBUG_FFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/janmenjaya/miniconda3/envs/sage/include -I/home/janmenjaya/miniconda3/envs/sage/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fcheck=all -fbacktrace -fimplicit-none -fvar-tracking-assignments -ffunction-sections -pipe
DEBUG_FORTRANFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/janmenjaya/miniconda3/envs/sage/include -I/home/janmenjaya/miniconda3/envs/sage/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fcheck=all -fbacktrace -fimplicit-none -fvar-tracking-assignments -ffunction-sections -pipe
DEFAULTS_PATH=/usr/share/gconf/ubuntu.default.path
DESKTOP_SESSION=ubuntu
DISPLAY=:0
DOT_SAGE=/home/janmenjaya/.sage/
DWP=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-dwp
ELFEDIT=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-elfedit
ENVMAN_LOAD=loaded
F77=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gfortran
F90=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gfortran
F95=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gfortran
FC_FOR_BUILD=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gfortran
FC=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gfortran
FFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/janmenjaya/miniconda3/envs/sage/include -I/home/janmenjaya/miniconda3/envs/sage/include
FORTRANFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/janmenjaya/miniconda3/envs/sage/include -I/home/janmenjaya/miniconda3/envs/sage/include
GCC_AR=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc-ar
GCC=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc
GCC_NM=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc-nm
GCC_RANLIB=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gcc-ranlib
GDMSESSION=ubuntu
GFORTRAN=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gfortran
GJS_DEBUG_OUTPUT=stderr
GJS_DEBUG_TOPICS=JS ERROR;JS LOG
GNOME_DESKTOP_SESSION_ID=this-is-deprecated
GNOME_SHELL_SESSION_MODE=ubuntu
GNOME_TERMINAL_SCREEN=/org/gnome/Terminal/screen/df94a991_4ebc_452d_bf0a_8cef9f5b0fd1
GNOME_TERMINAL_SERVICE=:1.403
GPG_AGENT_INFO=/run/user/1000/gnupg/S.gpg-agent:0:1
GPROF=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-gprof
GSETTINGS_SCHEMA_DIR_CONDA_BACKUP=
GSETTINGS_SCHEMA_DIR=/home/janmenjaya/miniconda3/envs/sage/share/glib-2.0/schemas
GTK_MODULES=gail:atk-bridge
GXX=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-g++
HOME=/home/janmenjaya
host_alias=x86_64-conda-linux-gnu
HOST=x86_64-conda-linux-gnu
id=2090
ID=Introduction to Scientific Computing
IM_CONFIG_PHASE=1
INFOPATH=/home/janmenjaya/open-source/sage/local/share/info::
INVOCATION_ID=cb452b47793749b8a39ff753d3bc664b
IPYTHONDIR=/home/janmenjaya/.sage//ipython-5.0.0
JOURNAL_STREAM=8:53677
JUPYTER_CONFIG_DIR=/home/janmenjaya/.sage//jupyter-4.1
LANG=en_IN
LANGUAGE=en_IN:en
LDFLAGS=-Wl,-rpath-link,/home/janmenjaya/open-source/sage/local/lib -L/home/janmenjaya/open-source/sage/local/lib -Wl,-rpath,/home/janmenjaya/open-source/sage/local/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/janmenjaya/miniconda3/envs/sage/lib -Wl,-rpath-link,/home/janmenjaya/miniconda3/envs/sage/lib -L/home/janmenjaya/miniconda3/envs/sage/lib
LD_GOLD=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-ld.gold
LD=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-ld
LESSCLOSE=/usr/bin/lesspipe %s %s
LESSOPEN=| /usr/bin/lesspipe %s
LIBRARY_PATH=/home/janmenjaya/open-source/sage/local/lib
LN=ln
LOGNAME=janmenjaya
LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:
MAKEFLAGS= V=1
MAKELEVEL=1
MAKE=make
MAKE_TERMERR=/dev/pts/2
MAKE_TERMOUT=/dev/pts/2
MANAGERPID=1774
MANDATORY_PATH=/usr/share/gconf/ubuntu.mandatory.path
MATHEMATICA_HOME=/usr/share/Wolfram/Documentation/13.3/en-us
MATLAB=/usr/local/MATLAB
MAXIMA_USERDIR=/home/janmenjaya/.sage//maxima
MESON_ARGS=-Dbuildtype=release
MFLAGS=
MKDIR=mkdir
MODSIZE=10000
MODTEMPFILE=file.txt.oD7PkoBnBpIkZxQiXzda
MPLCONFIGDIR=/home/janmenjaya/.sage//matplotlib-1.5.1
MV=mv
MYMC=Laptop
NM=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-nm
OBJCOPY=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-objcopy
OBJDUMP=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-objdump
OLDPWD=/home/janmenjaya/open-source/sage
OPENBLAS_NUM_THREADS=1
PATH=/home/janmenjaya/open-source/sage/build/bin:/home/janmenjaya/open-source/sage/src/bin:/home/janmenjaya/open-source/sage/local/bin:/home/janmenjaya/open-source/sage/src/bin:/home/janmenjaya/open-source/sage/build/bin:/home/janmenjaya/open-source/sage/local/var/lib/sage/venv-python3.12.5/bin:/home/janmenjaya/open-source/sage/local/bin:/home/janmenjaya/miniconda3/envs/sage/bin:/usr/local/bin:/home/janmenjaya/miniconda3/condabin:/home/janmenjaya/.local/bin:/home/janmenjaya/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/janmenjaya/install/ParaView-5.12/bin
PERL5LIB=/home/janmenjaya/open-source/sage/local/lib/perl5:
PKG_CONFIG_PATH=/home/janmenjaya/open-source/sage/local/lib/pkgconfig
PWD=/home/janmenjaya/open-source/sage/build/make
PYDEVD_DISABLE_FILE_VALIDATION=1
PYTHON_EGG_CACHE=/home/janmenjaya/.sage//.python-eggs
PYTHONPATH=/home/janmenjaya/open-source/sage/local
PYTHONUSERBASE=/home/janmenjaya/.sage//local
QT_ACCESSIBILITY=1
QT_IM_MODULE=ibus
RANLIB=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-ranlib
READELF=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-readelf
R_MAKEVARS_USER=/home/janmenjaya/.sage//R/Makevars.user
__sage__=
SAGE_DISTFILES=/home/janmenjaya/open-source/sage/upstream
SAGE_DOC=/home/janmenjaya/open-source/sage/local/share/doc/sage
SAGE_DOC_SRC=/home/janmenjaya/open-source/sage/src/doc
SAGE_ENV_CONFIG_SOURCED=1
SAGE_ENV_SOURCED=6:/home/janmenjaya/open-source/sage/local:/home/janmenjaya/open-source/sage/local/var/lib/sage/venv-python3.12.5:/home/janmenjaya/open-source/sage/src
SAGE_LOCAL=/home/janmenjaya/open-source/sage/local
SAGE_LOGFILE=logs/install.log
SAGE_LOGS=/home/janmenjaya/open-source/sage/logs/pkgs
SAGE_NUM_THREADS=1
SAGE_NUM_THREADS_PARALLEL=2
SAGE_ORIG_PATH=/home/janmenjaya/miniconda3/envs/sage/bin:/usr/local/bin:/home/janmenjaya/miniconda3/condabin:/home/janmenjaya/.local/bin:/home/janmenjaya/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/janmenjaya/install/ParaView-5.12/bin
SAGE_ORIG_PATH_SET=True
SAGE_PKGCONFIG=/home/janmenjaya/open-source/sage/local/lib/pkgconfig
SAGE_REPO_ANONYMOUS=https://github.com/sagemath/sage.git
SAGE_REPO_AUTHENTICATED=https://github.com/sagemath/sage.git
SAGE_ROOT=/home/janmenjaya/open-source/sage
SAGE_SHARE=/home/janmenjaya/open-source/sage/local/share
SAGE_SPKG_INST=/home/janmenjaya/open-source/sage/local/var/lib/sage/installed
SAGE_SRC=/home/janmenjaya/open-source/sage/src
SAGE_STARTUP_FILE=/home/janmenjaya/.sage//init.sage
SAGE_VENV=/home/janmenjaya/open-source/sage/local/var/lib/sage/venv-python3.12.5
_SBCL_HOME_CONDA_BACKUP=
SBCL_HOME=/home/janmenjaya/miniconda3/envs/sage/lib/sbcl
SESSION_MANAGER=local/alpha-zero:@/tmp/.ICE-unix/1923,unix/alpha-zero:/tmp/.ICE-unix/1923
SHELL=/bin/bash
SHLVL=5
SIZE=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-size
SSH_AGENT_PID=1885
SSH_AUTH_SOCK=/run/user/1000/keyring/ssh
STRINGS=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-strings
STRIP=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-strip
TERMINFO=/home/janmenjaya/open-source/sage/local/share/terminfo
TERM=xterm-256color
TOUCH=touch
UNAME=Linux
USER=janmenjaya
USERNAME=janmenjaya
_=/usr/bin/env
VTE_VERSION=6003
WINDOWPATH=2
XAUTHORITY=/run/user/1000/gdm/Xauthority
XDG_CONFIG_DIRS=/etc/xdg/xdg-ubuntu:/etc/xdg
XDG_CURRENT_DESKTOP=ubuntu:GNOME
XDG_DATA_DIRS=/usr/share/ubuntu:/usr/local/share/:/usr/share/:/var/lib/snapd/desktop
XDG_MENU_PREFIX=gnome-
XDG_RUNTIME_DIR=/run/user/1000
XDG_SESSION_CLASS=user
XDG_SESSION_DESKTOP=ubuntu
XDG_SESSION_TYPE=x11
XML_CATALOG_FILES=file:///home/janmenjaya/miniconda3/envs/sage/etc/xml/catalog file:///etc/xml/catalog
XMODIFIERS=@im=ibus
***********************************************
make[1]: Entering directory '/home/janmenjaya/open-source/sage/build/make'
[sagelib-10.7.beta6] Setting up build directory /home/janmenjaya/open-source/sage/local/var/lib/sage/venv-python3.12.5/var/tmp/sage/build/sagelib-10.7.beta6
[sagelib-10.7.beta6] Host system: Linux alpha-zero 5.15.0-139-generic #149~20.04.1-Ubuntu SMP Wed Apr 16 08:29:56 UTC 2025 x86_64 x86_64 x86_64 GNU/Linux
[sagelib-10.7.beta6] C compiler: /home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-cc, Reading specs from /home/janmenjaya/miniconda3/envs/sage/bin/../lib/gcc/x86_64-conda-linux-gnu/13.3.0/specs, could not find specs file conda.specs, COLLECT_GCC=/home/janmenjaya/miniconda3/envs/sage/bin/x86_64-conda-linux-gnu-cc, COLLECT_LTO_WRAPPER=/home/janmenjaya/miniconda3/envs/sage/bin/../libexec/gcc/x86_64-conda-linux-gnu/13.3.0/lto-wrapper, Target: x86_64-conda-linux-gnu, Configured with: ../configure --prefix=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho --with-slibdir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib --libdir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib --mandir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/man --build=x86_64-conda-linux-gnu --host=x86_64-conda-linux-gnu --target=x86_64-conda-linux-gnu --enable-languages=c,c++,fortran,objc,obj-c++ --enable-__cxa_atexit --disable-libmudflap --enable-libgomp --disable-libssp --enable-libquadmath --enable-libquadmath-support --enable-lto --enable-target-optspace --enable-plugin --enable-gold --disable-nls --disable-bootstrap --disable-multilib --enable-long-long --with-sysroot=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/x86_64-conda-linux-gnu/sysroot --with-build-sysroot=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/work/cf-compilers/x86_64-conda-linux-gnu/sysroot --with-native-system-header-dir=/usr/include --with-gxx-include-dir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/gcc/x86_64-conda-linux-gnu/13.3.0/include/c++ --with-pkgversion='conda-forge gcc 13.3.0-2' --with-bugurl=https://github.com/conda-forge/ctng-compilers-feedstock/issues/new/choose --enable-libsanitizer --enable-default-pie --enable-threads=posix, Thread model: posix, Supported LTO compression algorithms: zlib, gcc version 13.3.0 (conda-forge gcc 13.3.0-2)
[sagelib-10.7.beta6] No stamp file for package 'sagelib' in /home/janmenjaya/open-source/sage/local/var/lib/sage/venv-python3.12.5/var/lib/sage/installed
[sagelib-10.7.beta6] No spkg-legacy-uninstall script; nothing to do
[sagelib-10.7.beta6] [spkg-install] Installing sagelib-10.7.beta6 (editable mode)
[sagelib-10.7.beta6] [spkg-install] Using pip 25.1.1 from /home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/pip (python 3.11)
[sagelib-10.7.beta6] [spkg-install] Obtaining file:///home/janmenjaya/open-source/sage/src
[sagelib-10.7.beta6] [spkg-install] Checking if build backend supports build_editable: started
[sagelib-10.7.beta6] [spkg-install] Running command Checking if build backend supports build_editable
[sagelib-10.7.beta6] [spkg-install] Checking if build backend supports build_editable: finished with status 'done'
[sagelib-10.7.beta6] [spkg-install] Preparing editable metadata (pyproject.toml): started
[sagelib-10.7.beta6] [spkg-install] Running command Preparing editable metadata (pyproject.toml)
[sagelib-10.7.beta6] [spkg-install] /home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
[sagelib-10.7.beta6] [spkg-install] !!
[sagelib-10.7.beta6] [spkg-install]
[sagelib-10.7.beta6] [spkg-install] ********************************************************************************
[sagelib-10.7.beta6] [spkg-install] Please consider removing the following classifiers in favor of a SPDX license expression:
[sagelib-10.7.beta6] [spkg-install]
[sagelib-10.7.beta6] [spkg-install] License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
[sagelib-10.7.beta6] [spkg-install]
[sagelib-10.7.beta6] [spkg-install] See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
[sagelib-10.7.beta6] [spkg-install] ********************************************************************************
[sagelib-10.7.beta6] [spkg-install]
[sagelib-10.7.beta6] [spkg-install] !!
[sagelib-10.7.beta6] [spkg-install] self._finalize_license_expression()
[sagelib-10.7.beta6] [spkg-install] running dist_info
[sagelib-10.7.beta6] [spkg-install] creating /tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info
[sagelib-10.7.beta6] [spkg-install] writing /tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info/PKG-INFO
[sagelib-10.7.beta6] [spkg-install] writing dependency_links to /tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info/dependency_links.txt
[sagelib-10.7.beta6] [spkg-install] writing requirements to /tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info/requires.txt
[sagelib-10.7.beta6] [spkg-install] writing top-level names to /tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info/top_level.txt
[sagelib-10.7.beta6] [spkg-install] writing manifest file '/tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info/SOURCES.txt'
[sagelib-10.7.beta6] [spkg-install] reading manifest file '/tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info/SOURCES.txt'
[sagelib-10.7.beta6] [spkg-install] reading manifest template 'MANIFEST.in'
[sagelib-10.7.beta6] [spkg-install] no previously-included directories found matching 'sage/ext/interpreters'
[sagelib-10.7.beta6] [spkg-install] no previously-included directories found matching 'sage_docbuild'
[sagelib-10.7.beta6] [spkg-install] no previously-included directories found matching 'doc'
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files found matching 'sage_setup/autogen/giacpy*'
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching '*.c' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching '*.cpp' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files found matching 'sage/graphs/bliss.p*'
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files found matching 'sage/libs/sirocco.p*'
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files found matching 'sage/graphs/graph_decompositions/tdlib.p*'
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching 'all__sagemath_bliss.py' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching 'all__sagemath_coxeter3.py' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching 'all__sagemath_mcqd.py' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching 'all__sagemath_meataxe.py' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching 'all__sagemath_sirocco.py' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching 'all__sagemath_tdlib.py' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching '__pycache__' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching '*.bak' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching '*.so' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] warning: no previously-included files matching '*~' found anywhere in distribution
[sagelib-10.7.beta6] [spkg-install] no previously-included directories found matching '.tox'
[sagelib-10.7.beta6] [spkg-install] no previously-included directories found matching 'build'
[sagelib-10.7.beta6] [spkg-install] no previously-included directories found matching 'dist'
[sagelib-10.7.beta6] [spkg-install] adding license file 'LICENSE.txt'
[sagelib-10.7.beta6] [spkg-install] writing manifest file '/tmp/pip-modern-metadata-ydp_40b_/sagemath_standard.egg-info/SOURCES.txt'
[sagelib-10.7.beta6] [spkg-install] creating '/tmp/pip-modern-metadata-ydp_40b_/sagemath_standard-10.7b6.dist-info'
[sagelib-10.7.beta6] [spkg-install] Preparing editable metadata (pyproject.toml): finished with status 'done'
[sagelib-10.7.beta6] [spkg-install] Building wheels for collected packages: sagemath-standard
[sagelib-10.7.beta6] [spkg-install] Building editable for sagemath-standard (pyproject.toml): started
[sagelib-10.7.beta6] [spkg-install] Running command Building editable for sagemath-standard (pyproject.toml)
[sagelib-10.7.beta6] [spkg-install] Generating interpreters for fast_callable in /home/janmenjaya/open-source/sage/src/sage/ext/interpreters
[sagelib-10.7.beta6] [spkg-install] -> First build of interpreters
[sagelib-10.7.beta6] [spkg-install] ************************************************************************
[sagelib-10.7.beta6] [spkg-install] Traceback (most recent call last):
[sagelib-10.7.beta6] [spkg-install] File "/home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 389, in <module>
[sagelib-10.7.beta6] [spkg-install] main()
[sagelib-10.7.beta6] [spkg-install] File "/home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 373, in main
[sagelib-10.7.beta6] [spkg-install] json_out["return_val"] = hook(**hook_input["kwargs"])
[sagelib-10.7.beta6] [spkg-install] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[sagelib-10.7.beta6] [spkg-install] File "/home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 303, in build_editable
[sagelib-10.7.beta6] [spkg-install] return hook(wheel_directory, config_settings, metadata_directory)
[sagelib-10.7.beta6] [spkg-install] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[sagelib-10.7.beta6] [spkg-install] File "/home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/setuptools/build_meta.py", line 468, in build_editable
[sagelib-10.7.beta6] [spkg-install] return self._build_with_temp_dir(
[sagelib-10.7.beta6] [spkg-install] ^^^^^^^^^^^^^^^^^^^^^^^^^^
[sagelib-10.7.beta6] [spkg-install] File "/home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/setuptools/build_meta.py", line 404, in _build_with_temp_dir
[sagelib-10.7.beta6] [spkg-install] self.run_setup()
[sagelib-10.7.beta6] [spkg-install] File "/home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/setuptools/build_meta.py", line 317, in run_setup
[sagelib-10.7.beta6] [spkg-install] exec(code, locals())
[sagelib-10.7.beta6] [spkg-install] File "<string>", line 93, in <module>
[sagelib-10.7.beta6] [spkg-install] ModuleNotFoundError: No module named 'Cython'
[sagelib-10.7.beta6] [spkg-install] ************************************************************************
[sagelib-10.7.beta6] [spkg-install] Error building the Sage library
[sagelib-10.7.beta6] [spkg-install] ************************************************************************
[sagelib-10.7.beta6] [spkg-install] Please email sage-devel (http://groups.google.com/group/sage-devel)
[sagelib-10.7.beta6] [spkg-install] explaining the problem and including the relevant part of the log file
[sagelib-10.7.beta6] [spkg-install]
[sagelib-10.7.beta6] [spkg-install] Describe your computer, operating system, etc.
[sagelib-10.7.beta6] [spkg-install] ************************************************************************
[sagelib-10.7.beta6] [spkg-install] error: subprocess-exited-with-error
[sagelib-10.7.beta6] [spkg-install]
[sagelib-10.7.beta6] [spkg-install] × Building editable for sagemath-standard (pyproject.toml) did not run successfully.
[sagelib-10.7.beta6] [spkg-install] │ exit code: 1
[sagelib-10.7.beta6] [spkg-install] ╰─> See above for output.
[sagelib-10.7.beta6] [spkg-install]
[sagelib-10.7.beta6] [spkg-install] note: This error originates from a subprocess, and is likely not a problem with pip.
[sagelib-10.7.beta6] [spkg-install] full command: /home/janmenjaya/miniconda3/envs/sage/bin/python3 /home/janmenjaya/miniconda3/envs/sage/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_editable /tmp/tmpqxppr0j0
[sagelib-10.7.beta6] [spkg-install] cwd: /home/janmenjaya/open-source/sage/src
[sagelib-10.7.beta6] [spkg-install] Building editable for sagemath-standard (pyproject.toml): finished with status 'error'
[sagelib-10.7.beta6] [spkg-install] ERROR: Failed building editable for sagemath-standard
[sagelib-10.7.beta6] [spkg-install] Failed to build sagemath-standard
[sagelib-10.7.beta6] [spkg-install] ERROR: Failed to build installable wheels for some pyproject.toml based projects (sagemath-standard)
[sagelib-10.7.beta6] [spkg-install] ********************************************************************************************************************************************
[sagelib-10.7.beta6] [spkg-install] Error installing sagelib-10.7.beta6
[sagelib-10.7.beta6] [spkg-install] ********************************************************************************************************************************************
[sagelib-10.7.beta6] ************************************************************************
[sagelib-10.7.beta6] Error installing package sagelib-10.7.beta6
[sagelib-10.7.beta6] ************************************************************************
[sagelib-10.7.beta6] Please email sage-devel (http://groups.google.com/group/sage-devel)
[sagelib-10.7.beta6] explaining the problem and including the log files
[sagelib-10.7.beta6] /home/janmenjaya/open-source/sage/logs/pkgs/sagelib-10.7.beta6.log
[sagelib-10.7.beta6] and
[sagelib-10.7.beta6] /home/janmenjaya/open-source/sage/config.log
[sagelib-10.7.beta6] Describe your computer, operating system, etc.
[sagelib-10.7.beta6] If you want to try to fix the problem yourself, *don't* just cd to
[sagelib-10.7.beta6] /home/janmenjaya/open-source/sage/local/var/lib/sage/venv-python3.12.5/var/tmp/sage/build/sagelib-10.7.beta6 and type 'make' or whatever is appropriate.
[sagelib-10.7.beta6] Instead, the following commands setup all environment variables
[sagelib-10.7.beta6] correctly and load a subshell for you to debug the error:
[sagelib-10.7.beta6] (cd '/home/janmenjaya/open-source/sage/local/var/lib/sage/venv-python3.12.5/var/tmp/sage/build/sagelib-10.7.beta6' && '/home/janmenjaya/open-source/sage/sage' --buildsh)
[sagelib-10.7.beta6] When you are done debugging, you can type "exit" to leave the subshell.
[sagelib-10.7.beta6] ************************************************************************
make[1]: *** [Makefile:3547: sagelib-SAGE_VENV-no-deps] Error 1
make[1]: Leaving directory '/home/janmenjaya/open-source/sage/build/make'
***************************************************************
Error building Sage.
The following package(s) may have failed to build (not necessarily
during this run of 'make sagelib-no-deps'):
* package: brial-1.2.8
last build time: Jun 26 08:50
log file: /home/janmenjaya/open-source/sage/logs/pkgs/brial-1.2.8.log
* package: sagelib-10.7.beta6
last build time: Jun 26 09:03
log file: /home/janmenjaya/open-source/sage/logs/pkgs/sagelib-10.7.beta6.log
It is safe to delete any log files and build directories, but they
contain information that is helpful for debugging build problems.
WARNING: If you now run 'make' again, the build directory of the
same version of the package will, by default, be deleted. Set the
environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this.
make: *** [Makefile:40: sagelib-no-deps] Error 1
I have attached the log files and my systems configuration herewith.
I will appreciate, if someone could please kindly help me in this regard.
Please do let me know, if I need to provide any other details as well.
Thanks and warm regards,
Janmenjaya
Tobia...@gmx.de
Jun 26, 2025, 7:32:51 AM6/26/25
to sage-devel
Looks like your conda env is missing some dependencies. I suggest you follow https://doc-develop--sagemath.netlify.app/html/en/developer/walkthrough
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