$ cd ~/sagenb/sagenb
$ rm flask_version
$ mv ../flask_version .
$ cd ~/sage/local/lib/python/site-packages/sagenb-0.10.8.2-py2.7.egg
$ mv sagenb{,-0.10.8.2}
$ ln -s ~/sagenb/sagenb .
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I have set up a pull request to move the flask_version directory to inside sagenb.The documentation can be fixed later, but this should enable anyone to start working on sagenb dev immediately. I also checked that the newly generated sagenb tarball installs and works correctly.