API -access

[Deepa Maheshvare]

Hello Everyone,

I am trying to use the rest API to access the entries pertaining to a EC number.

When I use "EnzymeType":"wildtype", HTTP:Error 404 appears.However,setting the same query options manually on the webpage displays results.When I exclude the "EnzymeType":"wildtype" from the query dictionary the code gives output.Adding "EnzymeType":"wildtype"  causes the error.

I would be grateful for any help you could offer.

I am also attaching the python file for your kind consideration.

Thanks Deepa

[Matthias König]

As far as I can remember that is an issue with the webservice.

I reported this some time ago, i.e. "filtering by wildtype is not possible via web services"

I wrote a summary of the issues I found in the following document

https://docs.google.com/document/d/1Ossp07VM75L-9Gkt73ghqfBpJrCml6q6Oa_e_WIMxzU/edit#heading=h.30doc2tq8al

with the wildtype filtering being one of the issues.

Many of the things listed there have already been fixed, but I think the wildtype filtering is currently not possible (but would be very important for the usability of the web services).

[Deepa Maheshvare]

Hi Matthias,

Thanks a lot for the response.I hope the wildtype filtering issue gets fixed soon.

[Deepa Maheshvare]

Hi All,

Could someone give some advice on how to obtain the output in xml format?

Deepa

PS:I am using the code attached to get the output in xls format

[Ulrike Wittig]

Hi Deepa,
sorry, but currently XML export is only available for lists of suggestions as you can find in the web services documentation: http://sabiork.h-its.org/layouts/content/docuRESTfulWeb/RESTWebserviceIntro.gsp

Best regards,
Ulrike

[Ulrike Wittig]

Hi Deepa, hi Matthias,

we are working on it and will fix the problem.

Best regards,
Ulrike

[Deepa Maheshvare]

Hi Ulrike,

Could you please provide a sample python script for XML export for lists of suggestions?

Many thanks,

Deepa

[Deepa Maheshvare]

I wish to query information about the protein complex provided for Modifier-Catalyst of an entry.

​

I tried adding 'Modifers'(also Catalyst)in the query dic,in the sample code provided here .But the query failed.

query = {'format':'tsv', 'fields[]':['EntryID', 'Organism', 'UniprotID','ECNumber', 'Parameter', 'Modifiers']}     

Could someone advice me on how to retrieve this information?

 Thanks,

Deepa

On Fri, Dec 1, 2017 at 4:01 PM, Deepa Maheshvare <deepama...@gmail.com> wrote:

Hi Ulrike,

Thanks for the response.

Would it be possible to print at least the Variant type in the output?

I wish to get information about whether the Variant is  a wildtype or a mutant.

I tried adding 'Variant' in the query dic,in the sample code provided here .

query = {'format':'tsv', 'fields[]':['EntryID', 'Organism', 'UniprotID','ECNumber', 'Parameter', 'Variant']} 

However,the variant type is not listed in the results column.

Thanks,

Deepa

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[Niels Zondervan]

Hi Deepa,

I just tried to retrieve the EnzymeType data via the web API and it works. The issue has been fixed:
query = {'format':'tsv', 'fields[]':['EntryID', 'Organism', 'UniprotID','ECNumber', 'Parameter','PubMedID','EnzymeType']}

Regards,

Niels

On Tuesday, November 28, 2017 at 4:17:17 PM UTC+1, Deepa Maheshvare wrote: