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SABIO-RK
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ulrike...@h-its.org
3/9/21
Online Course 'Tools for Systems biology modeling and data exchange: COPASI, CellNetAnalyzer, SABIO-RK, FAIRDOMHub/SEEK'
Dear Colleagues, we are hosting an online course about 'Tools for Systems biology modeling and
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Online Course 'Tools for Systems biology modeling and data exchange: COPASI, CellNetAnalyzer, SABIO-RK, FAIRDOMHub/SEEK'
Dear Colleagues, we are hosting an online course about 'Tools for Systems biology modeling and
3/9/21
ulrike...@h-its.org
11/19/20
Please rate SABIO-RK!
Dear SABIO-RK users, our database is a funded service of de.NBI - the German Network for
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Please rate SABIO-RK!
Dear SABIO-RK users, our database is a funded service of de.NBI - the German Network for
11/19/20
ulrike...@h-its.org
8/20/20
Training Course 'Tools for Systems biology modeling and data exchange: COPASI, CellNetAnalyzer, SABIO-RK, FAIRDOMHub/SEEK'
We are co-organizing a de.NBI training course about 'Tools for Systems biology modeling and data
unread,
Training Course 'Tools for Systems biology modeling and data exchange: COPASI, CellNetAnalyzer, SABIO-RK, FAIRDOMHub/SEEK'
We are co-organizing a de.NBI training course about 'Tools for Systems biology modeling and data
8/20/20
Deepa
,
Rey, Maja
2
8/17/20
EC numbers and reaction ids
Hello Deepa, One reaction can be catalyzed by various enzymes belonging to distinct enzyme classes.
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EC numbers and reaction ids
Hello Deepa, One reaction can be catalyzed by various enzymes belonging to distinct enzyme classes.
8/17/20
Ulrike Wittig
7/7/20
new visualization in SABIO-RK
Dear SABIO-RK user, now search results in SABIO-RK are additionally presented visually in different
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new visualization in SABIO-RK
Dear SABIO-RK user, now search results in SABIO-RK are additionally presented visually in different
7/7/20
Deepa
,
Rey, Maja
2
9/4/19
Tissue info
Hello Deepa, To get a list of all tissues for which kinetic parameters have been documented in SABIO
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Tissue info
Hello Deepa, To get a list of all tissues for which kinetic parameters have been documented in SABIO
9/4/19
Deepa
,
Ulrike Wittig
2
8/15/19
Units not reported in Entry ID: 63645
Hi Deepa, thanks a lot for reporting it. I already added the unit to the parameter and it should be
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Units not reported in Entry ID: 63645
Hi Deepa, thanks a lot for reporting it. I already added the unit to the parameter and it should be
8/15/19
Deepa
,
Ulrike Wittig
8
7/25/19
Mapping compund name to SabioCompoundID
Thank you so much Deepa On Thu, Jul 25, 2019 at 10:09 AM Ulrike Wittig <ulrike...@h-its.org
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Mapping compund name to SabioCompoundID
Thank you so much Deepa On Thu, Jul 25, 2019 at 10:09 AM Ulrike Wittig <ulrike...@h-its.org
7/25/19
Matthias König
,
Ulrike Wittig
2
4/26/19
Special characters not displayed in SABIO-RK frontend (publication authors)
Hi Matthias, thanks for pointing to that problem. We will fix it. Best regards, Ulrike Am Freitag, 26
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Special characters not displayed in SABIO-RK frontend (publication authors)
Hi Matthias, thanks for pointing to that problem. We will fix it. Best regards, Ulrike Am Freitag, 26
4/26/19
Ulrike Wittig
4/25/19
Europe PMC links to SABIO-RK
Publications in Europe PMC are linked to corresponding data in SABIO-RK Each publication for which
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Europe PMC links to SABIO-RK
Publications in Europe PMC are linked to corresponding data in SABIO-RK Each publication for which
4/25/19
Deepa
, …
Ulrike Wittig
3
3/28/19
Question regarding rate expression
Hi Deepa, again we had a closer look at the corresponding publication (PMID: 7961659) and the authors
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Question regarding rate expression
Hi Deepa, again we had a closer look at the corresponding publication (PMID: 7961659) and the authors
3/28/19
Ulrike Wittig
1/21/19
Announcement
Course 'Tools for Systems biology modeling and data exchange' in March 2019
Hi all, we are co-organizing a course about 'Tools for Systems biology modeling and data exchange
unread,
Announcement
Course 'Tools for Systems biology modeling and data exchange' in March 2019
Hi all, we are co-organizing a course about 'Tools for Systems biology modeling and data exchange
1/21/19
Ulrike Wittig
12/12/18
new SABIO-RK software release
Hi all, there is a new SABIO-RK software release available including the following changes and
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new SABIO-RK software release
Hi all, there is a new SABIO-RK software release available including the following changes and
12/12/18
Andrew Tarzia
,
Ulrike Wittig
10
11/26/18
Difference between results of API and Entry on website
Hey Ulrike, Thank you very much for keeping me updated. Andrew On Monday, November 26, 2018 at 9:53:
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Difference between results of API and Entry on website
Hey Ulrike, Thank you very much for keeping me updated. Andrew On Monday, November 26, 2018 at 9:53:
11/26/18
Andrew Tarzia
,
Ulrike Wittig
2
11/26/18
InChi of DNA (SABIO-Compound-ID: 1770) corresponds to a different molecule
Hi Andrew, you are right that the InChI for DNA is wrong in the database. I deleted it and it's
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InChi of DNA (SABIO-Compound-ID: 1770) corresponds to a different molecule
Hi Andrew, you are right that the InChI for DNA is wrong in the database. I deleted it and it's
11/26/18
Deepa
6/18/18
Transport reactions
Hello, I would like to view all transport reactions listed in SABIO. Could someone explain how the
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Transport reactions
Hello, I would like to view all transport reactions listed in SABIO. Could someone explain how the
6/18/18
Ulrike Wittig
2/27/18
new SABIO-RK database and software release
Hi all, there are new releases for SABIO-RK database content and software. Database release v. 2.4: -
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new SABIO-RK database and software release
Hi all, there are new releases for SABIO-RK database content and software. Database release v. 2.4: -
2/27/18
Deepa Maheshvare
,
Ulrike Wittig
2
2/27/18
Query-units
Hi Deepa, unfortunately there is no possibility to define the units in the query. For the parameter
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Query-units
Hi Deepa, unfortunately there is no possibility to define the units in the query. For the parameter
2/27/18
Niels Zondervan
,
Ulrike Wittig
4
2/26/18
API retrieval of the CHEBI ID for SabioEntryIDs fails
Hi Niels, we are currently still working on it and it will be available within the next days. We will
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API retrieval of the CHEBI ID for SabioEntryIDs fails
Hi Niels, we are currently still working on it and it will be available within the next days. We will
2/26/18
Deepa Maheshvare
,
Ulrike Wittig
2
2/20/18
Apparent Vmax and Km
Hi Deepa, the term 'apparent' is given by the authors of the publication. It names parameters
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Apparent Vmax and Km
Hi Deepa, the term 'apparent' is given by the authors of the publication. It names parameters
2/20/18
Deepa Maheshvare
,
Ulrike Wittig
2
2/16/18
It's up and running again. Thanks for the notification! Ulrike Am Freitag, 16. Februar 2018 10:25
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It's up and running again. Thanks for the notification! Ulrike Am Freitag, 16. Februar 2018 10:25
2/16/18
Deepa Maheshvare
,
Ulrike Wittig
2
2/13/18
Query-Parametertype
Hi Deepa, if you query for 'Parameter' six different parameter related columns are generated
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Query-Parametertype
Hi Deepa, if you query for 'Parameter' six different parameter related columns are generated
2/13/18
Niels Zondervan
2
1/26/18
SabioRK post request server down?
Whatever the problem was, it works fine now, so I guess it was fixed🙂. 2018-01-26 11:41 GMT+01:00
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SabioRK post request server down?
Whatever the problem was, it works fine now, so I guess it was fixed🙂. 2018-01-26 11:41 GMT+01:00
1/26/18
Deepa Maheshvare
,
Ulrike Wittig
2
1/26/18
Specific Activity
Hi Deepa, the specific enzyme activities in SABIO-RK are not necessarily given for purified enzymes.
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Specific Activity
Hi Deepa, the specific enzyme activities in SABIO-RK are not necessarily given for purified enzymes.
1/26/18
Deepa Maheshvare
, …
Matthias König
5
1/17/18
Vmax --units
Just to add. it's not correct to just set per gram of tissue equivalent to per ml of tissue. This
unread,
Vmax --units
Just to add. it's not correct to just set per gram of tissue equivalent to per ml of tissue. This
1/17/18
Deepa Maheshvare
, …
Niels Zondervan
9
1/10/18
API -access
Hi Deepa, I just tried to retrieve the EnzymeType data via the web API and it works. The issue has
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API -access
Hi Deepa, I just tried to retrieve the EnzymeType data via the web API and it works. The issue has
1/10/18
Ulrike Wittig
11/9/17
new SABIO-RK software release
Hi all, as of November 8th, 2017 there is a new software release for SABIO-RK (http://sabiork.h-its.
unread,
new SABIO-RK software release
Hi all, as of November 8th, 2017 there is a new software release for SABIO-RK (http://sabiork.h-its.
11/9/17
Ulrike Wittig
10/13/17
SABIO-RK: new software release
Hi all, there is a new software release for SABIO-RK (http://sabiork.h-its.org/) including the
unread,
SABIO-RK: new software release
Hi all, there is a new software release for SABIO-RK (http://sabiork.h-its.org/) including the
10/13/17
Deepa Maheshvare
,
Maja Rey
4
9/4/17
enzyme catalysis
Dear Deepa, in your examples you can only see that the protein P13929 is active as a dimer naturally
unread,
enzyme catalysis
Dear Deepa, in your examples you can only see that the protein P13929 is active as a dimer naturally
9/4/17
Deepa Maheshvare
,
Andreas Dräger
3
8/31/17
Kinetics for reversible reactions
Thanks, Deepa, for this clarification! My first personal impression would be that you should pick the
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Kinetics for reversible reactions
Thanks, Deepa, for this clarification! My first personal impression would be that you should pick the
8/31/17