Hi David,
the /etc/rundeck/profile is used by both the server and the commandline tools currently, so I think your JMX config is then also being applied to the rd-jobs command.
You could perhaps modify /etc/rundeck/profile to have two separate RDECK_JVM settings, and modify the rd-jobs bash script to use the other one.
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Ok, sounds like the docs, or preferably the init-script should be updated. We should allow JVM settings for the server only.
do you mind filing this as an issue?