EXITING because of FATAL PARAMETER ERROR: limitGenomeGenerateRAM=31000000000is too small for your genome
Unfortunately, at least from the rsem-prepare-reference help, there doesn't seem to be any way to add this to the rsem-prepare-reference pipeline.
is this correct and if so, besides "why?", what would be the recommended work-around? i was under the impression that I couldn't just feed in transcriptome coordinate bam files generated with star using an index build outside of rsem, i.e. I had to use rsem to build the star index. correct or not?