I have a couple of questions regarding running EBSeq.
First, is there a way to annotate the transcripts after generating the table from EBSeq? Currently, the table I have lists the transcripts only be GenBank accession number, and I have to manually search NCBI to know what transcripts they are.
Secondly, how many iterations should I specify when running EBSeq? Currently, I am running it with 100 iterations, and I'm not sure if there is anything to gain by increasing it to 1000 iterations.