[rsem-announce] RSEM v1.1.20 is released!

[b...@cs.wisc.edu]

Hi all,

RSEM v1.1.20 is online now.

- Added an option to set the temporary folder name
- Removed sample_name.sam.gz. Instead, RSEM uses samtools to convert
bowtie outputted SAM file into a BAM file under the temporary folder
- RSEM generated BAM files now contains all alignment lines produced by
bowtie or user-specified aligners, including unalignable reads. Please
note that for paired-end reads, if one mate has alignments but the other
does not, RSEM will mark the alignable mate as "unmappable" (flag bit 0x4)
and append an optional field "Z0:A:!"

You can find the source codes here
http://deweylab.biostat.wisc.edu/rsem/

Best,
Bo