RSEM v1.1.8 is online now. Added sanity checks for the user choosed
aligner, including if the reference used and alignments produced follow
RSEM's requirements. Added a new plot by "rsem-plot-model", a histogram of
reads with different number of alignments. A bug in "rsem-plot-model" is
fixed.
You can find the source code here
http://deweylab.biostat.wisc.edu/rsem/
Best,
Bo