RSEM Announce

Hi everyone, RSEM v1.3.1 is released! - Added --gff3-genes-as-transcripts option for rsem-prepare-

Hi all, RSEM v1.2.7 is online now. - 'rsem-find-DE' is replaced by 'rsem-run-ebseq'

Hi all, RSEM v1.2.6 is online now. - Install the latest version of EBSeq from Bioconductor and if

Hi all, RSEM v1.2.5 is online now. - Updated EBSeq from v1.1.5 to v1.1.6 - Fixed a bug in 'rsem-

Hi all, RSEM v1.2.4 is online now. - Fixed a bug that leads to poor parallelization performance in

Hi all, CSEM v2.4 is online now. - Replaced the Fenwick tree like structure with a linear structure

Hi all, RSEM v1.2.3 is online now. - Fixed a bug in 'EBSeq/rsem-for-ebseq-generate-ngvector-from-

Hi all, RSEM v1.2.2 is online now. - Updated EBSeq to v1.1.5 - Modified 'rsem-find-DE' to

Hi all, RSEM v1.2.1 is online now. - Added poly(A) tails to 'reference_name.transcripts.fa'

Hi all, RSEM v1.2.1 is online now. - Added poly(A) tails to 'reference_name.transcripts.fa'

Hi all, RSEM v1.2.0 is online now. - Changed output formats, added FPKM field etc. - Fixed a bug

Hi all, RSEM v1.1.21 is online now. - Removed optional field "Z0:A:!" in the BAM outputs -

Hi all, RSEM v1.1.21 is online now. - Removed optional field "Z0:A:!" in the BAM outputs -

Hi all, RSEM v1.1.20 is online now. - Added an option to set the temporary folder name - Removed

Hi all, RSEM v1.1.19 is online now. - Allowed > 2^31 hits - Added some instructions on how to

Hi all, There is a bug in GCC (version 4.5.3 or higher) which will make RSEM fail to compile. For

Hi all, RSEM v1.1.16 is online now. - Added --time option to show time consumed by each phase - Moved

Hi all, RSEM v1.1.11 is online now. A bug related to expected counts calculation is fixed. Allow

Hi all, RSEM v1.1.10 is online now. Add some user-friendly error messages. You can find the source

Hi all, RSEM v1.1.9 is online now. "rsem-plot-model" is modified. A bug related to

Hi all, RSEM v1.1.8 is online now. Added sanity checks for the user choosed aligner, including if the

Hi all, RSEM v1.1.7 is online now. A bug under transcript set model (ie use transcript set as

Hi all, RSEM v1.1.6 is online now. One bug in 'rsem-plot-model' is fixed. A bug related to

Hi all, RSEM v1.1.5 is online now (http://deweylab.biostat.wisc.edu/rsem/). Several bugs are fixed.

Dear users, In addition, RSEM v1.1.2 supports the newest SAM specification, SAM spec v1.3 now. Best,