Fwd: RMAPOptionException

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M.Sammeth

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Aug 31, 2011, 1:13:23 PM8/31/11
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Dear rseq users,

I got a strange error (below) I cannot make head nor tail of. Anybody
got an RMAPOptionException when running rseg?

Thanks for any comments

---------- Forwarded message ----------

Dear Andrew, dear Quiang,

thank you for your program. I installed as suggested by the manual,
all executables run up to the level to print out the help messages. I
tried

rseg-diff -v -i chrall1_sorted.bed chrall2_sorted.bed -c
mouse-mm9-size.bed -m 2 -N tst1

and I got

terminate called after throwing an instance of 'RMAPOptionException'
Aborted

Could you help me to bring light in what may have gone wrong?

Thank you

Song, Qiang

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Aug 31, 2011, 2:23:48 PM8/31/11
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The option -i expects an integer argument, which is missed in your command.

Try:

rseg-diff -v -i 10 chrall1_sorted.bed chrall2_sorted.bed -c

mouse-mm9-size.bed -m 2 -N tst1

Regards,
Song Qiang

micha

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Sep 1, 2011, 4:55:42 AM9/1/11
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Sure, thanks.

micha
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