SNP association in single QTL between SNP and phenotype of a soybean bi-parental RIL

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段绍伟

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Feb 17, 2022, 10:06:03 PM2/17/22
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Hi everyone,

 I have already use qtl2 to get a QTL peak.

How could i analyze  SNP association in the QTL peak when there are SNP table and phenotyping table for bi-parental RIL population?

Best,
Shaowei

Karl Broman

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Feb 17, 2022, 10:09:43 PM2/17/22
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Start by looking at the user guide, https://kbroman.org/qtl2/assets/vignettes/user_guide.html
There are example data files at https://kbroman.org/qtl2/pages/sampledata.html

karl

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