Porting analysis from mm10 to GRCm39
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Saikat Bandyopadhyay
May 14, 2025, 9:40:07 AMMay 14
to R/qtl2 discussion
This might be a very naive question, but what is the best way to convert a cross object that was originally created with mm10 GM marker positions to GRCm39?
Karl Broman
May 14, 2025, 9:49:06 AMMay 14
to R/qtl2 discussion
The mmconvert package has a function cross2_to_grcm39() to do exactly this, in cases where the genotypes are from GigaMUGA or MegaMUGA arrays.
karl
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