plotGeno with cross2 data

[Luis Arge]

Hi

I need to create plots (a diagnostic plot for individuals) from plotGeno function. However, my data are in the cross2 format, not the first version.

Is there a new function implemented to plotGeno to handle with cross2 data?

Or, is there a function to convert cross2 to cross1 (first version) format?

Thanks,

Luis Arge

[Karl Broman]

There’s not any facility for converting data from cross2 to cross1 format.

And unfortunately there’s not a direct equivalent for plotGeno to handle cross2 data.

There’s plot.calc_genoprob for showing the genotype probabilities for a single individual,

and plot_onegeno for showing an individuals genome-wide genotypes.

karl