variance explained

[a b]

Hi Karl,

We've performed genome scans for traits, and identified significant peaks. Now, we're interested in calculating the variance explained by the peaks. Is there an easy way to do this in qtl2?

Thanks,

Basel

[Karl Broman]

No, I don't think I've implemented anything to do that.

karl

--
You received this message because you are subscribed to the Google Groups "R/qtl2 discussion" group.
To unsubscribe from this group and stop receiving emails from it, send an email to rqtl2-disc+...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/rqtl2-disc/8f7dc204-0bc1-43db-a7c5-aaef997483aa%40googlegroups.com.

[Camila Zanella]

Dear Karl,

I am working with MAGIC population, I've been able to calculated the variance explained using mpMap (cov = 0). I am also using qtl2 to corroborate our results and I am in touch because I would like to know if you have recently implemented similar function for Rqtl2 too.

Best regards,

Camila  

[Karl Broman]

I've not done anything further on this. You can see the changes in the package in the NEWS file, available at github and CRAN:

    https://github.com/rqtl/qtl2/blob/master/NEWS.md

    https://cran.r-project.org/web/packages/qtl2/news/news.html

karl