Hi,
The scantwo() results of two LGs with interaction were as follows:
Trait chr1 chr2 pos1f pos2f lod.full pval lod.fv1 pval
1 Phe1 LG2 LG21 34 24 7.948200 0.246 6.592670 0.130
2 Phe2 LG2 LG21 34 24 9.010371 0.262 7.528616 0.212
lod.int pval pos1a pos2a lod.add pval lod.av1 pval 6.1518923 0.088 30 40 1.796308 1.000 0.4407773 1.000
7.3046853 0.053 12 18 1.705686 1.000 0.2239308 1.000
Both LGs had no QTL evidence for any phenotype.
I wonder if this means that I should merge those LGs.
Should I?
Thanks a lot!