summary.scanone no longer exported?

[Keith]

Hello, It's very possible I'm missing something obvious but...

In the process of trying to figure out a problem that one of our users is having with J/qtl I upgraded R/qtl from version 2.21-2 to version 2.22-21 on my mac under R version 2.13.1 and it seems that the summary.scanone function is no longer exported. From a quick scan of release notes I don't see anything on this. Is this intentional?

> qtl::summary.scanone

Error: 'summary.scanone' is not an exported object from 'namespace:qtl'

> qtl:::summary.scanone

function (object, threshold, format = c("onepheno", "allpheno",

    "allpeaks", "tabByCol", "tabByChr"), perms, alpha, lodcolumn = 1,

    pvalues = FALSE, df = FALSE, ci.function = c("lodint", "bayesint"),

    ...)

{ 

Thank you,
Keith

[Karl Broman]

That's right, but it still works if you do summary([scanone object]).

karl

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[Keith]

Thanks Karl, I updated J/qtl to use just "summary" functions and it's working again. -Keith

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