Investigation of QTL intervals

[Othmane Lamoumni]

Hello everyone,

I apologize for addressing a topic out of R/qtl applications, but I would like to benefit from this community experience in QTL analysis.

As you know, QTL mapping is generally followed by candidate genes search in the corresponding intervals. This process differs according to the used markers, annotation to reference genome, and available databases of the studied species.

If you can propose me some tools, packages (R, Python) to conduct such analysis.

Thank you in advance,

Othmane