Issue 69 in rpostgresql: Compile on mavericks

[rpost...@googlecode.com]

Status: New
Owner: ----
Labels: Type-Defect Priority-Medium

New issue 69 by U2US...@gmail.com: Compile on mavericks
https://code.google.com/p/rpostgresql/issues/detail?id=69

Hi thanks for providing this essential package for connecting R & postgres.

I checked out the latest(273) code and compile in rstudio but got following
error:


clang: error: unknown argument: '-Kthread'
clang: error: unknown argument: '-kthread'
make[1]: *** [fe-auth.o] Error 1
make: *** [libpq/libpq.5.dylib] Error 2
ERROR: compilation failed for package ‘RPostgreSQL’
* removing
‘/Library/Frameworks/R.framework/Versions/3.1/Resources/library/RPostgreSQL’
* restoring previous
‘/Library/Frameworks/R.framework/Versions/3.1/Resources/library/RPostgreSQL’
Warning in install.packages :
installation of package ‘/Users/Nathaniel/Desktop/RPostgreSQL.tar.gz’ had
non-zero exit status

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Updates:
Status: WontFix
Owner: ne...@neiltiffin.com

Comment #1 on issue 69 by ne...@neiltiffin.com: Compile on mavericks
https://code.google.com/p/rpostgresql/issues/detail?id=69

We do not support RStudio. You might get help from the RStudio folks. With
that said, I did verify that RPostgreSQL compiles just fine from R in
Yosemite & Mavericks from the command line.

See below for Mavericks:

MBP:RPostgreSQL$ R CMD INSTALL --preclean RPostgreSQL
* installing to
library '/Library/Frameworks/R.framework/Versions/3.1/Resources/library'
* installing *source* package 'RPostgreSQL' ...
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking build system type... x86_64-apple-darwin13.4.0
checking host system type... x86_64-apple-darwin13.4.0
checking target system type... x86_64-apple-darwin13.4.0
checking for pg_config... /opt/local/bin/pg_config
checking for "/opt/local/include/postgresql94/libpq-fe.h"... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
-I/opt/local/include/postgresql94 -I/usr/local/include
-I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall
-mtune=core2 -g -O2 -c RS-DBI.c -o RS-DBI.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
-I/opt/local/include/postgresql94 -I/usr/local/include
-I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall
-mtune=core2 -g -O2 -c RS-PQescape.c -o RS-PQescape.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
-I/opt/local/include/postgresql94 -I/usr/local/include
-I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall
-mtune=core2 -g -O2 -c RS-PostgreSQL.c -o RS-PostgreSQL.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
-I/opt/local/include/postgresql94 -I/usr/local/include
-I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall
-mtune=core2 -g -O2 -c RS-pgsql-copy.c -o RS-pgsql-copy.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
-I/opt/local/include/postgresql94 -I/usr/local/include
-I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall
-mtune=core2 -g -O2 -c RS-pgsql-getResult.c -o RS-pgsql-getResult.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
-I/opt/local/include/postgresql94 -I/usr/local/include
-I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall
-mtune=core2 -g -O2 -c RS-pgsql-pqexec.c -o RS-pgsql-pqexec.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
-I/opt/local/include/postgresql94 -I/usr/local/include
-I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall
-mtune=core2 -g -O2 -c RS-pgsql-pqexecparams.c -o RS-pgsql-pqexecparams.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined
dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib
-o RPostgreSQL.so RS-DBI.o RS-PQescape.o RS-PostgreSQL.o RS-pgsql-copy.o
RS-pgsql-getResult.o RS-pgsql-pqexec.o RS-pgsql-pqexecparams.o
-L/opt/local/lib/postgresql94 -lpq -F/Library/Frameworks/R.framework/..
-framework R -Wl,-framework -Wl,CoreFoundation
installing to
/Library/Frameworks/R.framework/Versions/3.1/Resources/library/RPostgreSQL/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'format' from package 'base' in
package 'RPostgreSQL'
Creating a generic function for 'print' from package 'base' in
package 'RPostgreSQL'
Creating a generic function for 'summary' from package 'base' in
package 'RPostgreSQL'
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (RPostgreSQL)
MBP:RPostgreSQL$ ./check_with_vars.sh

-------------- write version info ----------------------
ProductName: Mac OS X
ProductVersion: 10.9.5
BuildVersion: 13F34

RPostgreSQL svn version: 273

psql (PostgreSQL) 9.4rc1

R version 3.1.1 (2014-07-10)
Platform: x86_64-apple-darwin13.1.0 (64-bit)