.cwa files error (Error in data[, temperaturecolumn] : subscript out of bounds)

[Abdul Haleem Butt]

Hi all, 

Facing a problem while processing a cwa file, the temperature column is out of bounds, I've attached my recorded file if one can try to see the problem.

error is while loading chunk in function g.calibrate: even set Temprature= FALSE, does not work. It is 7 days of recording. the one thing I did and probably created the problem, was stop data recording three hours before the time I set on the device, which may created a problem

 library(GGIR)
    GGIR(mode=c(1,2,3,4,5),
    datadir="abdul_NOV",
    outputdir="vignettes",
    desiredtz = "Europe/Brussels",
    do.report=c(2,4,5),
    overwrite = TRUE,
    do.imp=FALSE,
    do.parallel = FALSE,
    idloc=1,
    print.filename=FALSE,
    storefolderstructure = FALSE,
    #=====================
    # Part 1
    #=====================
    do.cal=TRUE,
    sensor.locationCharacter = "wrist",
    use.temperature=TRUE,
    windowsizes = c(5,900,3600),
    do.enmo=TRUE,
    acc.metric="ENMO",
    do.anglex=FALSE,
    do.anglez=TRUE,
    do.angley=TRUE,
    #do.neishabouricounts = TRUE,  
  
    chunksize=1,
    printsummary=TRUE,
    epochvalues2csv=TRUE,
    minimum_MM_length.part5 = 24,
   

 6024506_0000000000.cwa

 

Kind Regards, 

Abdul Haleem 

[Jairo Hidalgo Migueles]

Hi,

I processed your file with no issues. The only thing I changed in your script is the argument  sensor.locationCharacter = "wrist", which does not exist in GGIR, I used  sensor.location = "wrist" (which is default setting).

Additionally, make sure your directory containing this file ("abdul_NOV") does only contain accelerometer raw data files (in your case, *.cwa files). It might be that GGIR is trying to load a file containing something different to accelerometer data.

Best,
Jairo

[Abdul Haleem Butt]

Dear Jairo, 

really appricated for your feedback. I am facing the same problem so far, even removing the wrist location as suggested. could you please share the results with me the file obtained in part 5 (ms5.outraw) and the visual report (file summary reports)? really appreciate your help. 

Kind Regards, 

Abdul Haleem 

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[Vincent van Hees]

 could you please share the results with me ...

Please reply to Jairo's suggestion that you may have other data files in your data directory.

Also, do this in a new output directory to avoid previous affecting your new output. If you still get the error build a minimally reproducible example. For example, tell us which GGIR call does cause the error and which call does not cause the error.

All works fine, if I do:

GGIR(mode = c(1, 2),

     datadir = datadir,

     idloc = 1,

     outputdir = outputdir,

     do.report = c(2))

This google group is not a data processing service, but intended to help investigate and resolve issues GGIR questions/issues. Only then there is a chance that users like you can learn to use GGIR without help.

Thanks,

Vincent

To view this discussion on the web, visit https://groups.google.com/d/msgid/RpackageGGIR/CAEYmEhh_KzHrZe3hsHVHgWUdZcmCQqjgRZ9p3UJZ-RA8wYmGRQ%40mail.gmail.com.

[Abdul Haleem Butt]

there is no other file in the data directory, I can see there is an error in the part1 where GGIR is not able to read the file with 

[Vincent van Hees]

Please read my email and respond to all suggestions. Providing reproducible examples is critical if you want help. 

Thanks,

Vincent

[Jairo Hidalgo Migueles]

It would help if you share your config.csv file, you would find it in your output folder.

Best,
Jairo

[Abdul Haleem Butt]

Hi Jairo, 

thanks for your feedback, actually I was unable to resolve the issue with my previous recording and recorded another 5 days with Axivity Ax6, and it is working fine now. 

Kind Regards, 

Abdul Haleem