gbifmap {rgbif} error

[Yassine Mrabet]

Hi,

I receive this error message when running the following script (from rgbif tutorial):

Error in complete.cases(input$latitude, input$latitude) :

library(rgbif)
library(plyr)
library(XML)
library(httr)
library(maps)
library(ggplot2)
key <- name_backbone(name = "Puma concolor", kingdom = "plants")$speciesKey
dat <- occ_search(taxonKey = key, return = "data", limit = 300, fields = "all")
dat$name <- "Puma concolor"  
gbifmap(input = dat)

Please, what is the meaning of this error? 

Regards,

Yassine Mrabet

Additional outputs: 

> version

platform       x86_64-w64-mingw32          
arch           x86_64                      
os             mingw32                     
system         x86_64, mingw32             
status                                     
major          3                           
minor          0.3                         
year           2014                        
month          03                          
day            06                          
svn rev        65126                       
language       R                           
version.string R version 3.0.3 (2014-03-06)
nickname       Warm Puppy  

> packageVersion("rgbif")
0.6.0

[Scott Chamberlain]

Hi, 

So sorry about that. We updated a lot in this new version, but must have forgot about the map function. GBIF changed the name of the latitude and longitude variables to decimalLaitude and decimalLongitude to fit closer with a standard for data called Darwin Core.  We updated rgbif for this, but not gbif map apparently. I'll submit a new version today, and I'll send you a file you should be able to install with the fix soon. 

Scott

[Yassine Mrabet]

Thank you for your quick response. I thinks that you made a great job with this library. good luck!

[Scott Chamberlain]

Hi, 

Here is a packaged version of rgbif with the fixes. You should be able to install by doing

install.packages("pathtofile/rgbif_0.6.2.tar.gz", repos=NULL, type="source")

Let me know if that does or doesn't work.

Scott

[Yassine Mrabet]

It works perfectly fine, thank you !

[Scott Chamberlain]

Great!

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